Carg12686 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg12686
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptiontranscription factor bHLH101-like
LocationCarg_Chr07: 7396771 .. 7398673 (+)
RNA-Seq ExpressionCarg12686
SyntenyCarg12686
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AACCCTCAGTCTACAAACGGCCGCTCATCGGAGCTGTTCATTCAGTTCTCATCACCACAGCCATCTCATCATGTCAAGATTGAGAGCTGTTCTCCACCATCAGCTGGTGACGGTCGTCATCGTGGTGGCGGTGGCTGTGGCGGTGATGATCCGGTCGCTGTAGCTAAGAAACTTAAACATAATGCTAGCGAACGCGATCGTCGCAAGAAGATGAACTCTCTCTATACTTCTCTTCGCTGCTTGCTTCCATCGACAAATCGATCGGTAGGTTTTGCTTCTTCATTAGGCATGAATGTGTTAATATGTTTTTCAAATTTGGATATAAATTCTAATAGGATTGTGATATCGCACGTCGGTTAGAACAAAACATTCTTTATAAGCATGTGAAAACTTCTCTCTGTCAAACACGTTTTAAAAACCTTGAGGGGAAGCGTGAAAGGGAAAACCCAAAGAGGACAATATTCGTTAGCGGTGGGCCTGGGCTGTTACACATGGTATTAGAGCTAGACACCGGGCGATGTGTCAATGAGGAGGTTGAGCCTTGAAGGGGGTGGATACGAGGCGGTATGTCAGCAAGGACGTTGGGCCCCGAAAAGGGGTGGATTATGATATCCCACATCGGTTGGGGAGGAGAACGAAGCATTCTTTATAAGGGTGTGGAAACTCTCCCTAGCAGACTCGTTTTAAAAACCTTAAGAGGGAGCCCAAAAGGGAAAACTCAAAGAGGACAATATCTACTGGACGTAAGCTGCTACAAATGGTATTAGAGCACGGGCAATATGTCAATGAGGAGGTTGAGTCCCGAAGGGGGTGGACACGAGGCAGTGTGCCAACAAGGACGCTGGGCCCTGAAAGAAGGTGGATTGGGGAGTCCCACGTCGATTGGAGAAGAGAATGAGTGTCAGCAAGGACGTGGGCCCCGAAGGGGGGTGAACTATGATATCTCACGTCAGTTGGGGAGGAAAACAAAACATTCTTTATAGGGGTGTGGAAACCTTTTCGTATCATACACATTTTAAAAACTTTGAAGGGAAGCCCGAAAGAAAAAGTCGTTCAAAGAGGACAATATCTACTAGCGTTAGACTTAAACTAGTTAAGGAGTGTTCATGGGTTGGATTTCGTCGGGATTAGAACATTTTTTGACGGTCGAAAATCACTTCTTGCAGAAAACAATGAGTAATCCAGCCACAATATCAAGGGCTTTGAAGTATATACCTGAGCTAAGACAGCACGTGGAGGAGCTAAGGAGAAGGAAGCAAGGGCTTGAGACAAAGATAAATTCCATAACTCATGACCAACAAAAGCAAGTGAGGAAAGACAAGGAGGCCCCATGGATGGGTTGTTCTTCATGTGCTGTGAATTGGCTAAGAGAAAATGAAGCATTGCTTCAACTAACTTCTAATGATACCTTCAAACTCAAATTTTCACAAATTCTCCATTCTCTAGACGAAGAAGAACTTCTCGTTAAGACCATTTCTACCTTTCAGTCGTTCGATGGGAGGCACTTCTTTACTTTGCTCGTTCAGGTATAATTTAATATTTTTTCTATACAAATGTTCGTGGGTTGGATCGGGTCGGGTCGGATTATAATATTTTTCCGACCCAATCTAATTGTTTGAGTTGTGAATTTGTGAGATCTCACATCAGTAGGAGAGGGAAATAAAACATTCTTTGCAAGGTGTAGAAACCTCTTCATAATAGACCCGTTTTAAAACATCGAAGGAAAGCCCTATTCTCGGGTTCGTAATAACTAAAAATATTTAAGAAAACGGAGATATTTTATTTGTTTATTTAAAGTTTTAAGCCTTAATATATAATTTGATTTGATTTGATTTTATGTTTAATGCAGGCTAAGCCAAATACTCCCTCAAGAGTGCTGCAAGAGATCTTGAATAGAAAGTTC

mRNA sequence

AACCCTCAGTCTACAAACGGCCGCTCATCGGAGCTGTTCATTCAGTTCTCATCACCACAGCCATCTCATCATGTCAAGATTGAGAGCTGTTCTCCACCATCAGCTGGTGACGGTCGTCATCGTGGTGGCGGTGGCTGTGGCGGTGATGATCCGGTCGCTCACGTGGAGGAGCTAAGGAGAAGGAAGCAAGGGCTTGAGACAAAGATAAATTCCATAACTCATGACCAACAAAAGCAAGTGAGGAAAGACAAGGAGGCCCCATGGATGGGTTGTTCTTCATGTGCTGTGAATTGGCTAAGAGAAAATGAAGCATTGCTTCAACTAACTTCTAATGATACCTTCAAACTCAAATTTTCACAAATTCTCCATTCTCTAGACGAAGAAGAACTTCTCGCTAAGCCAAATACTCCCTCAAGAGTGCTGCAAGAGATCTTGAATAGAAAGTTC

Coding sequence (CDS)

AACCCTCAGTCTACAAACGGCCGCTCATCGGAGCTGTTCATTCAGTTCTCATCACCACAGCCATCTCATCATGTCAAGATTGAGAGCTGTTCTCCACCATCAGCTGGTGACGGTCGTCATCGTGGTGGCGGTGGCTGTGGCGGTGATGATCCGGTCGCTCACGTGGAGGAGCTAAGGAGAAGGAAGCAAGGGCTTGAGACAAAGATAAATTCCATAACTCATGACCAACAAAAGCAAGTGAGGAAAGACAAGGAGGCCCCATGGATGGGTTGTTCTTCATGTGCTGTGAATTGGCTAAGAGAAAATGAAGCATTGCTTCAACTAACTTCTAATGATACCTTCAAACTCAAATTTTCACAAATTCTCCATTCTCTAGACGAAGAAGAACTTCTCGCTAAGCCAAATACTCCCTCAAGAGTGCTGCAAGAGATCTTGAATAGAAAGTTC

Protein sequence

NPQSTNGRSSELFIQFSSPQPSHHVKIESCSPPSAGDGRHRGGGGCGGDDPVAHVEELRRRKQGLETKINSITHDQQKQVRKDKEAPWMGCSSCAVNWLRENEALLQLTSNDTFKLKFSQILHSLDEEELLAKPNTPSRVLQEILNRKF
Homology
BLAST of Carg12686 vs. NCBI nr
Match: KAG7027567.1 (hypothetical protein SDJN02_11581, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 303.1 bits (775), Expect = 1.3e-78
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0

Query: 1   NPQSTNGRSSELFIQFSSPQPSHHVKIESCSPPSAGDGRHRGGGGCGGDDPVAHVEELRR 60
           NPQSTNGRSSELFIQFSSPQPSHHVKIESCSPPSAGDGRHRGGGGCGGDDPVAHVEELRR
Sbjct: 1   NPQSTNGRSSELFIQFSSPQPSHHVKIESCSPPSAGDGRHRGGGGCGGDDPVAHVEELRR 60

Query: 61  RKQGLETKINSITHDQQKQVRKDKEAPWMGCSSCAVNWLRENEALLQLTSNDTFKLKFSQ 120
           RKQGLETKINSITHDQQKQVRKDKEAPWMGCSSCAVNWLRENEALLQLTSNDTFKLKFSQ
Sbjct: 61  RKQGLETKINSITHDQQKQVRKDKEAPWMGCSSCAVNWLRENEALLQLTSNDTFKLKFSQ 120

Query: 121 ILHSLDEEELLAKPNTPSRVLQEILNRKF 150
           ILHSLDEEELLAKPNTPSRVLQEILNRKF
Sbjct: 121 ILHSLDEEELLAKPNTPSRVLQEILNRKF 149

BLAST of Carg12686 vs. NCBI nr
Match: KAG6595594.1 (Transcription factor ORG2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 262.3 bits (669), Expect = 2.5e-66
Identity = 147/226 (65.04%), Postives = 148/226 (65.49%), Query Frame = 0

Query: 1   NPQSTNGRSSELFIQFSSPQPSHHVKIESCSPPSAGDGRHRGGGGCGGDDPVA------- 60
           NPQSTN RSSELFIQFSSPQPSHHVK+ESCSPPSAGDGRHRGGGGCGGDDPVA       
Sbjct: 19  NPQSTNSRSSELFIQFSSPQPSHHVKVESCSPPSAGDGRHRGGGGCGGDDPVAVAKKLKH 78

Query: 61  -------------------------------------------------HVEELRRRKQG 120
                                                            HVEELRRRKQG
Sbjct: 79  NASERDRRKKMNSLYTSLRCLLPSTNRSKTMSNPATISRALKYIPELRQHVEELRRRKQG 138

Query: 121 LETKINSITHDQQKQVRKDKEAPWMGCSSCAVNWLRENEALLQLTSNDTFKLKFSQILHS 150
           LETKINSITHDQQKQVRKDKEAPWMGCSSCAVNWLRENEALLQLTSNDTFKLKFSQILHS
Sbjct: 139 LETKINSITHDQQKQVRKDKEAPWMGCSSCAVNWLRENEALLQLTSNDTFKLKFSQILHS 198

BLAST of Carg12686 vs. NCBI nr
Match: XP_022925194.1 (transcription factor bHLH101-like [Cucurbita moschata])

HSP 1 Score: 258.8 bits (660), Expect = 2.8e-65
Identity = 144/226 (63.72%), Postives = 149/226 (65.93%), Query Frame = 0

Query: 1   NPQSTNGRSSELFIQFSSPQPSHHVKIESCSPPSAGDGRHRGGGGCGGDDPVA------- 60
           NPQSTNGRSSELFIQFSSP+PSHHVK+ESCSPPSAGDGRHRGGGGCGGDDPVA       
Sbjct: 19  NPQSTNGRSSELFIQFSSPRPSHHVKVESCSPPSAGDGRHRGGGGCGGDDPVAVAKKLKH 78

Query: 61  -------------------------------------------------HVEELRRRKQG 120
                                                            HVEELRRRKQG
Sbjct: 79  NASERDRRKKMNSLYTSLRCLLPSTNRTKTMSNPATISRALKYIPELRQHVEELRRRKQG 138

Query: 121 LETKINSITHDQQKQVRKDKEAPWMGCSSCAVNWLRENEALLQLTSNDTFKLKFSQILHS 150
           LETKIN+ITHDQQKQVRK+KEAPWMGCSSCAVNWLRENEALLQLTSNDTFKLKFSQILHS
Sbjct: 139 LETKINAITHDQQKQVRKNKEAPWMGCSSCAVNWLRENEALLQLTSNDTFKLKFSQILHS 198

BLAST of Carg12686 vs. NCBI nr
Match: XP_023518049.1 (transcription factor bHLH101-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 253.1 bits (645), Expect = 1.5e-63
Identity = 141/226 (62.39%), Postives = 147/226 (65.04%), Query Frame = 0

Query: 1   NPQSTNGRSSELFIQFSSPQPSHHVKIESCSPPSAGDGRHRGGGGCGGDDPVA------- 60
           NPQSTNGRSSELFIQFSSPQPSHHVK+ESCSPPSAGDG HRGGGGCGGDDP+A       
Sbjct: 16  NPQSTNGRSSELFIQFSSPQPSHHVKVESCSPPSAGDGHHRGGGGCGGDDPLAVAKKLKH 75

Query: 61  -------------------------------------------------HVEELRRRKQG 120
                                                            HVEELRRRKQG
Sbjct: 76  NASERDRRKKMNSLYTSLRCLLPSTNRTKTMSNPATISRALKYIPELRQHVEELRRRKQG 135

Query: 121 LETKINSITHDQQKQVRKDKEAPWMGCSSCAVNWLRENEALLQLTSNDTFKLKFSQILHS 150
           LETKIN++THDQQKQVRK+KEAPWMGCSSCAVNWLRENEALLQLTSNDTFKLKFSQIL S
Sbjct: 136 LETKINAMTHDQQKQVRKNKEAPWMGCSSCAVNWLRENEALLQLTSNDTFKLKFSQILRS 195

BLAST of Carg12686 vs. NCBI nr
Match: XP_022966445.1 (transcription factor bHLH101-like [Cucurbita maxima])

HSP 1 Score: 243.8 bits (621), Expect = 9.3e-61
Identity = 138/226 (61.06%), Postives = 144/226 (63.72%), Query Frame = 0

Query: 1   NPQSTNGRSSELFIQFSSPQPSHHVKIESCSPPSAGDGRHRGGGGCGGDDPVA------- 60
           NPQSTNGRSSELFIQFSSPQPSHHVK+ESCSPPSAGDGRHRGGGG G DDPVA       
Sbjct: 19  NPQSTNGRSSELFIQFSSPQPSHHVKVESCSPPSAGDGRHRGGGGFGSDDPVAVAKKLKH 78

Query: 61  -------------------------------------------------HVEELRRRKQG 120
                                                             VEELRRRKQG
Sbjct: 79  NASERDRRKKMNSLYTSLRCLLPSTNRTKTMSNPATISRALKYIPELRQQVEELRRRKQG 138

Query: 121 LETKINSITHDQQKQVRKDKEAPWMGCSSCAVNWLRENEALLQLTSNDTFKLKFSQILHS 150
           LETKIN+ITHDQQKQVRK+K+APWMGCSSCAVNWLRENEALLQLTSNDT KLKFSQILHS
Sbjct: 139 LETKINAITHDQQKQVRKNKDAPWMGCSSCAVNWLRENEALLQLTSNDTLKLKFSQILHS 198

BLAST of Carg12686 vs. ExPASy TrEMBL
Match: A0A6J1EBF8 (transcription factor bHLH101-like OS=Cucurbita moschata OX=3662 GN=LOC111432509 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.4e-65
Identity = 144/226 (63.72%), Postives = 149/226 (65.93%), Query Frame = 0

Query: 1   NPQSTNGRSSELFIQFSSPQPSHHVKIESCSPPSAGDGRHRGGGGCGGDDPVA------- 60
           NPQSTNGRSSELFIQFSSP+PSHHVK+ESCSPPSAGDGRHRGGGGCGGDDPVA       
Sbjct: 19  NPQSTNGRSSELFIQFSSPRPSHHVKVESCSPPSAGDGRHRGGGGCGGDDPVAVAKKLKH 78

Query: 61  -------------------------------------------------HVEELRRRKQG 120
                                                            HVEELRRRKQG
Sbjct: 79  NASERDRRKKMNSLYTSLRCLLPSTNRTKTMSNPATISRALKYIPELRQHVEELRRRKQG 138

Query: 121 LETKINSITHDQQKQVRKDKEAPWMGCSSCAVNWLRENEALLQLTSNDTFKLKFSQILHS 150
           LETKIN+ITHDQQKQVRK+KEAPWMGCSSCAVNWLRENEALLQLTSNDTFKLKFSQILHS
Sbjct: 139 LETKINAITHDQQKQVRKNKEAPWMGCSSCAVNWLRENEALLQLTSNDTFKLKFSQILHS 198

BLAST of Carg12686 vs. ExPASy TrEMBL
Match: A0A6J1HRN3 (transcription factor bHLH101-like OS=Cucurbita maxima OX=3661 GN=LOC111466098 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 4.5e-61
Identity = 138/226 (61.06%), Postives = 144/226 (63.72%), Query Frame = 0

Query: 1   NPQSTNGRSSELFIQFSSPQPSHHVKIESCSPPSAGDGRHRGGGGCGGDDPVA------- 60
           NPQSTNGRSSELFIQFSSPQPSHHVK+ESCSPPSAGDGRHRGGGG G DDPVA       
Sbjct: 19  NPQSTNGRSSELFIQFSSPQPSHHVKVESCSPPSAGDGRHRGGGGFGSDDPVAVAKKLKH 78

Query: 61  -------------------------------------------------HVEELRRRKQG 120
                                                             VEELRRRKQG
Sbjct: 79  NASERDRRKKMNSLYTSLRCLLPSTNRTKTMSNPATISRALKYIPELRQQVEELRRRKQG 138

Query: 121 LETKINSITHDQQKQVRKDKEAPWMGCSSCAVNWLRENEALLQLTSNDTFKLKFSQILHS 150
           LETKIN+ITHDQQKQVRK+K+APWMGCSSCAVNWLRENEALLQLTSNDT KLKFSQILHS
Sbjct: 139 LETKINAITHDQQKQVRKNKDAPWMGCSSCAVNWLRENEALLQLTSNDTLKLKFSQILHS 198

BLAST of Carg12686 vs. ExPASy TrEMBL
Match: A0A0A0KYH3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G434980 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 7.8e-13
Identity = 57/117 (48.72%), Postives = 68/117 (58.12%), Query Frame = 0

Query: 55  VEELRRRKQGLETKINSITHDQQKQVRKDKEAPWMGCSSCAVNWLRENEALLQLTSNDT- 114
           VE LRRRK+GL TK+N    +  KQ+RK+ + PWM  S CAVNWL E EALLQ+   D  
Sbjct: 28  VEGLRRRKEGLVTKLN---EENLKQIRKNNKEPWMS-SFCAVNWLSETEALLQIALEDQT 87

Query: 115 -FKLKFSQILHSLDEEELL---------------------AKPNTPSRVLQEILNRK 149
             +L FSQIL SL+E+ LL                     AK NT  RVLQEILN+K
Sbjct: 88  HTQLPFSQILLSLEEDGLLLLTASSFRSFNGRLFLTLLLQAKANTLPRVLQEILNKK 140

BLAST of Carg12686 vs. ExPASy TrEMBL
Match: A0A1S3C1M0 (transcription factor bHLH101-like OS=Cucumis melo OX=3656 GN=LOC103495812 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.5e-11
Identity = 54/117 (46.15%), Postives = 67/117 (57.26%), Query Frame = 0

Query: 55  VEELRRRKQGLETKINSITHDQQKQVRKDKEAPWMGCSSCAVNWLRENEALLQLTSNDT- 114
           VE LRRRK+GL TK+N    +  KQ+RK+ + PWM  S CAVNWL E EALLQ+   +  
Sbjct: 94  VEGLRRRKEGLVTKLN---EENLKQIRKNNKEPWMS-SLCAVNWLSETEALLQIALEEQT 153

Query: 115 -FKLKFSQILHSLDEEELL---------------------AKPNTPSRVLQEILNRK 149
             +L FSQIL SL+++ LL                     AK N   RVLQEILN+K
Sbjct: 154 HTQLPFSQILLSLEDDGLLLSTASSFRSSNGSLFFTLLLQAKANILPRVLQEILNKK 206

BLAST of Carg12686 vs. ExPASy TrEMBL
Match: A0A5D3DDY1 (Transcription factor bHLH101-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1479G00120 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 6.8e-09
Identity = 42/79 (53.16%), Postives = 54/79 (68.35%), Query Frame = 0

Query: 55  VEELRRRKQGLETKINSITHDQQKQVRKDKEAPWMGCSSCAVNWLRENEALLQLTSNDT- 114
           VE LRRRK+GL TK+N    +  KQ+RK+ + PWM  S CAVNWL E EALLQ+   +  
Sbjct: 21  VEGLRRRKEGLVTKLN---EENLKQIRKNNKEPWMS-SLCAVNWLSETEALLQIALEEQT 80

Query: 115 -FKLKFSQILHSLDEEELL 132
             +L FSQIL SL+++ LL
Sbjct: 81  HTQLPFSQILLSLEDDGLL 95

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7027567.11.3e-78100.00hypothetical protein SDJN02_11581, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6595594.12.5e-6665.04Transcription factor ORG2, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022925194.12.8e-6563.72transcription factor bHLH101-like [Cucurbita moschata][more]
XP_023518049.11.5e-6362.39transcription factor bHLH101-like [Cucurbita pepo subsp. pepo][more]
XP_022966445.19.3e-6161.06transcription factor bHLH101-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1EBF81.4e-6563.72transcription factor bHLH101-like OS=Cucurbita moschata OX=3662 GN=LOC111432509 ... [more]
A0A6J1HRN34.5e-6161.06transcription factor bHLH101-like OS=Cucurbita maxima OX=3661 GN=LOC111466098 PE... [more]
A0A0A0KYH37.8e-1348.72Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G434980 PE=4 SV=1[more]
A0A1S3C1M02.5e-1146.15transcription factor bHLH101-like OS=Cucumis melo OX=3656 GN=LOC103495812 PE=4 S... [more]
A0A5D3DDY16.8e-0953.16Transcription factor bHLH101-like protein OS=Cucumis melo var. makuwa OX=1194695... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 55..75
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..52
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..84

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg12686-RACarg12686-RAmRNA