Carg12680 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg12680
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr07: 7328066 .. 7328806 (+)
RNA-Seq ExpressionCarg12680
SyntenyCarg12680
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TATAATGACGCCTATTTTTTTTTATAGACAATCATTTTAAAAATTATCTTATCTTTTTCCAAACAAAGATTATATCATACATACTGTAGAACAAAGATCATATCATGCATATAGTAGGTCGAAGTCGCTGAGAATCGTTAGACTACCAGTAGTCAAAATGGATTTGGACTTTTCTTCCTCTCTAGTCTCTCTCTCTCAATTTTATGCCGTTCTTCCAGCACTTCTCCTTCAATTTTGGTTGCTAGATGATGCAATTCACGAAATCGCAAAGCACGACCATTGAAATCGCCGATCCCAAGCTTGGAGACTTGAATTCCATGTTTTTCCTCCTTCGGCATGCCCTCTTCGACCACTATACATGCAAATCAGGTTAGGTTTGTACTGATTCTTTTCATTTTGTTTCCGATTATTTCTTCACCAAATGAACTGGGTGTGATTAATTGCGAATCAGCGATAAACCCCATCTTCGTTTTGGGAATTTAGGGCAAATCAGTTGGGGATTTTTTTCTTTTTTTCTTTGTATGTTTGTTCGAACATTTTTGGATTTTGTGTTTCATTTCTGTACGGATTCAGGAAATTGAGATGTCGTAAGTTAATATTGTACAATTTGAAGATTGGGCTGATCTGTTCGTTGGTTTTGATTTGAGAAAGAGCATCATCTTGATAGAGAAACGAACCGGCTTCAGCATTCGTTGGCTACTATCAATTTGCTCAACTTATGGTGTTTTCTGCTGGACTTAG

mRNA sequence

TATAATGACGCCTATTTTTTTTTATAGACAATCATTTTAAAAATTATCTTATCTTTTTCCAAACAAAGATTATATCATACATACTGTAGAACAAAGATCATATCATGCATATAGTAGGTCGAAGTCGCTGAGAATCGTTAGACTACCAGTAGTCAAAATGGATTTGGACTTTTCTTCCTCTCTAGTCTCTCTCTCTCAATTTTATGCCGTTCTTCCAGCACTTCTCCTTCAATTTTGGTTGCTAGATGATGCAATTCACGAAATCGCAAAGCACGACCATTGAAATCGCCGATCCCAAGCTTGGAGACTTGAATTCCATGTTTTTCCTCCTTCGGCATGCCCTCTTCGACCACTATACATGCAAATCAGATTGGGCTGATCTGTTCGTTGGTTTTGATTTGAGAAAGAGCATCATCTTGATAGAGAAACGAACCGGCTTCAGCATTCGTTGGCTACTATCAATTTGCTCAACTTATGGTGTTTTCTGCTGGACTTAG

Coding sequence (CDS)

ATGATGCAATTCACGAAATCGCAAAGCACGACCATTGAAATCGCCGATCCCAAGCTTGGAGACTTGAATTCCATGTTTTTCCTCCTTCGGCATGCCCTCTTCGACCACTATACATGCAAATCAGATTGGGCTGATCTGTTCGTTGGTTTTGATTTGAGAAAGAGCATCATCTTGATAGAGAAACGAACCGGCTTCAGCATTCGTTGGCTACTATCAATTTGCTCAACTTATGGTGTTTTCTGCTGGACTTAG

Protein sequence

MMQFTKSQSTTIEIADPKLGDLNSMFFLLRHALFDHYTCKSDWADLFVGFDLRKSIILIEKRTGFSIRWLLSICSTYGVFCWT
Homology
[Close]
BLAST of Carg12680 vs. NCBI nr
Match: KAG7027561.1 (hypothetical protein SDJN02_11575 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 177.6 bits (449), Expect = 4.6e-41
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0 

Query: 1  MMQFTKSQSTTIEIADPKLGDLNSMFFLLRHALFDHYTCKSDWADLFVGFDLRKSIILIE 60
          MMQFTKSQSTTIEIADPKLGDLNSMFFLLRHALFDHYTCKSDWADLFVGFDLRKSIILIE
Sbjct: 1  MMQFTKSQSTTIEIADPKLGDLNSMFFLLRHALFDHYTCKSDWADLFVGFDLRKSIILIE 60

Query: 61 KRTGFSIRWLLSICSTYGVFCWT 84
          KRTGFSIRWLLSICSTYGVFCWT
Sbjct: 61 KRTGFSIRWLLSICSTYGVFCWT 83

[Close]
BLAST of Carg12680 vs. NCBI nr
Match: KAG6595579.1 (hypothetical protein SDJN03_12132, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.4 bits (220), Expect = 1.6e-14
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 0 

Query: 1  MMQFTKSQSTTIEIADPKLGDLNSMFFLLRHALFDHYTCKSD 43
          MMQFTKSQSTTIEIADPKLGDLNSMFFLLRHALFDHYTCKS+
Sbjct: 1  MMQFTKSQSTTIEIADPKLGDLNSMFFLLRHALFDHYTCKSE 42

The following BLAST results are available for this feature:
BLAST of Carg12680 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7027561.14.6e-41100.00hypothetical protein SDJN02_11575 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6595579.11.6e-1497.62hypothetical protein SDJN03_12132, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg12680 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg12680 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg12680 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg12680-RACarg12680-RAmRNA