Carg12679 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg12679
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr07: 7321375 .. 7326969 (-)
RNA-Seq Expression	Carg12679
Synteny	Carg12679

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATATTGAGCCACACCTGCGGCGGCTATATATCTCCCTCGCGACACCGCCCGCGGCAGCCAGCACCGCTCGACGGCGACACACTCACGACGACAACTTCTGGGTTGCGACTTCGCTGCATCGGCAAGATCTGTAACTTCAAGACCTTTATGCGGTGATCGAGACCTACAGTGACTACCTGGTGCGCTAGCTCCCCTTGTGTGATGAACCACCAAGATCCCAAGTTGGTGGCAATGTTTTTGGTAAGAATCTAAGCGATTCAGGTGGTATAGATTCGTGATTAAACTATTATCAATGAGTTTTAATCTTGGAATATCATGTTTGTGATATGTTTGTATATGATTTATTGACCTCTTCTACTAATTTGAATATAGACTTGATGCATTAGCATGCTAAAGATTTGTGAGATTGAGTTAAAAGCATGGTGCTTCGAATGTTTGTAAAAGTTCATGCCATGTACGCTCATGCTTCATTTCTGTTTATGAGAAAACTGTGATAGTGTTGTTAATGTATTAAGGCTAAGGAAGTAAGACTTGTTAAGGTAGGTAGTAGGGCGCCTGGTAAACAGGATTGGGGATTGACATGTCTGAATCTATAAGGGTGAGTATTAGGGTCTTGAGTATAAATTGTCATGGGTCAGTGCGTTGTGAGGTATTGAGCTAAATGTCATGGTTTTTGGTAGAAAGGGGCAAGGGCTAATTTGGCTAGGTTTGAATTGTGAGATCCCATATCGGTTGGGGAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCCTTAGCAGACGCTTTTTAAAAACCTCGAGGGGAAGTCCGAAAGGGAAAGCTCAAAGAGGACAATATCTGCTAGCGGTGGGCTTGGGCTGTTATACTTGTTAAAAATAATTAAGGGCCAATGGGTTGGGAGGTGAAGAGCTATGTGTTGGAACATTAGAGATAACTGTTGGGGCCTTAGGTAGAAATGGTGGGCAAATGAGATAGAGAGAATGTGTGATTATGAAGCCAATAAGGTGTTGATGTACTTGGGTGTGTAATTATGTGAATTTTATTACTAGAGTTAGAACTAAAGGTTGATGGGGAAGGGAAGGAAAGGTTAAGAAATAATTGGAAATGGGAGTCTTTTATAGAGGTACATGAAGTCTTGAAAAATTTGTACTCATTCTTTTCGATGTTAGATGTTAAACATAACATTGTGGAGAGATACTATGCGAGATCTCACATCGGTTGGAGAGGGGAACGAAACATTCTTTATAAGGGTGTGAAAACCTTTCCCTAACAAACGCTTTTTAAAACCATGAGGCCGACGACGATACGTAACGAGCGAAAGCACTAGCGGTGAGTTTGGGCTGTTACAAAATGGTATCAGAGTTAGACACCGGGCAGTGTGCCAGCGATGACACTAGGCCCCGAAGGGGGGTAGATTGTGAGATCCCACATCGGTTGGAGAGGGGAATGAAGCATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACACGTTTTAAAACTATGAGGCCGACAGCGATACGTAACGGGCCAAAGCGGATGATATCTACTAGCGGTGGGCTTGGGCTGTTACATACTATGATCATTGCCAAATAAAAGTAATTCAATTTTCGAGTTTTCTTTTAGAATATTACATTACATGTGAAAATGGAGATTCAAACTTACAACTTCATATATCGAAGTGAAGATGCCTTTAACTGTTGTTCTATAAAAGAAATCTAGTGTTGGGGAGAGAAGAATGTAGATAAGTGGATAAGTGAAGTAACATTGGGCCATTAATTATTGATGAACATAAAACTGGAATGAAAATTAATGCATAGTAGACGAGAAGTAAGAATTTGACCTTGACTATACTTCATTATTTTCGATTTCCTGAGTAGATACATAATACCTTAACCAAATGAGAGAAGCTCAGGTTAACTTCTTTCTCGTATTTTATAATATGGAATAACTGTGTTATCAGGGAGATAGTGAAAGCGAGCAACAAGGAAAAGGCGATAGCAACCTCATTAGCAAGAGTAATATGAGATGTCAACACTGTGCGGGTCCTCTCTCGAAGGATATGGTCTTGTGCCTTCATTCTAAATTTACTTATATTTTCTTGAACTGCACCCGAGTCTCGCTTTAATCTGTATTTCCGTATGCATATTGCAGGAAACCAGTGCTTGGACAATTCCTCCTCTTATTAGGGATAGTTTCTCTATGGTATTATTCTTTATTCAAACATCACCACGAACTCATTGTTTTCTATCATCTAGAAAATTGTAACTTGTCGTAATCTTGTTCGCTTTCCTGTTGGAATGTTTTGGACATCTCTTAGATTGGCTCTGCTGTTGGTGGTACTGCCAGTGCTTTTTATGGATTTAATCATGGTAATATACCCCGCCTTTCGATAAATCCAACAAATACAATACGAGTTGTTATGTTCGTCGTTTTCTTGTATCAAGTAATAGCTCATATTTTTTAATGTCAACGCAGTGATGCCGGTTGTCCAGAGATCAGTGAAAGGGCCTATGTGGTTGCATTTTCTTATTGGTGTAAGTACCTTATTGCTTTCCATTGTTATAATTATGAACTGTTCCAAAATCTATTTCCAGGTACTTTTGATTCTTTGATTTCTAGTCTTTCTTTTGATGTGATAGAAGATTTAGTAGTTTGTACAATATTAGCTAATAGCAACATTGCTGAGGTTTCTTCCAAATTTCTGAAAGGTCTTAGGAACACATTCTGAAAATTAAGATTGTCAATCATGCTATTCACCAAAAATCTTATACTTCTGTTGTCCATTAGCATAAACCTATTTGTGTGATCCCACGTCGGTTGGAGAGAGGAATGAAACATTTCTTATAAGGGTGTGAAACCTCTCCCTAGTAGACGCGTTAAAAAACATTGAGGGGAAGCCTGGAAAGGGAAGCCCAAAGAGGATAATATCTGCTAGCGGTGGGTTTGAGTTGTTACAAATGGTATCAGAGCCAGACACTGGGCGCTGACGCTGGGCCCTCAAGGGGGTGGATTGTGAGATCTCATATTGGTTGGAGAGGGAACGAAACATTTCTTATAAGGGTGTGAAACCTCTCCCTAGTAGACGCATTAGAAAACCTTAAGGGGAAGCCTAGAAAGGAAAGCCCAAAGAGGACAATATTTGCTAGCGGTGGGTTTGGGTTGTTACAAATGGTATCAGAGCTAGGCTCCGGGCACTGTCCAGCAAGGACGCTGAGCCCTCAAGGGGGTGGATTGTGAGATCTCATATTGGTTGGAGAGGGAACGAAACATTTCTTACAAGGGTGTGAAAACCTCTCCCTAGTAGACGTGTTTTAAAATTGTGAGGCTGACGGCGATACGTAATGGGCTAAAACGGACAATATCTGCTGTGGAAAATAAATACCTTAAAAACATCTAAAGGGAACGTGTAACTGCTTCTACAAACCATGGTGGTCACTAGAGACTACAACATTGTTAGGTTCTTGAGTGAAATCTTTGTCGATGGTTTTGCAAAATTTTGATATGCCACCGATCAAGTTTACACGCACTAAAGAGTGAAAGGACCGAAAGTGGCCCAAAACATGGAGGCCTAATTATAGTTAGAAAAGGGAGTTGCGTGATCATTCCTTTTGATGGGAGTTGCTTTGGCTTGGTTTTGATGGGAGATTGATGGACATCATTGAAGGGCTTGGTCTATATATAAAGCTGGAAGATTGTAATAGTCCAAGTCCATGGAAGATTGTAATAGTCCAAGTCCATCGCTAGCCGATATTGTCCTCTTTGAGTTTTTCCTTCTAGGCTTCCCTTCACGGTTTTGAAACGCGTTCACTAGGGAGAGGTTTCTATACTCTTACGAGGAATGCTTCGTTCCCCCTCTCCAGCTGATGTGAGATTTCACAATCCACACTCCTCTGGAGGCCCAACGTCCTTGTTGGCACACCGCGTGGTGTCTGACTTTGATACCATTTGTAACAGTCCAAGCCTACCGCTAGCGGATATTGTCTTCTTTGGGCTTTTCCTTCCGGGCTTCCCTTCAAGGTTTTAAAATGCGTCCACTAGGGAGAAGTTTCCACATCCTTATAAGGAATGTGTCGTTCCCCTCTCCAACCGAAATGTTGTTGGTGAAAAGGAGGGTCTTTTGGTGTGGATCAATGGCCTTCCTGACCCTTCTCTTGTTAATGAGTTTCCTGATGTCCTAATGGCTCCTTAGCCAAGCTAGAAAAGCATCTAACAAACTCTATTAAGATTCACGAAGGAATGTGCGCATTTTTTCAATAGCTGTTATGATGTGAAGCCTATTCTTGGAGGAGTGTTTTAAATAGAATGTTCATATTTCTCTATCATTGGGTTGCCTCTTAGGAAGCATATCTTTTATCCTGAACATGATTGTCACTTTTCACTAGGAGGAAAATACATGATGTTCAAAGAAACCTTCGAACTCTCTTGCATCGTACCCATACGCATATTTGCTAGCTATGTTTTTTCGCCTCACGAGTTCATGACCTTTGAAAACTCTCCAAAGCCAATTCGAAGAAGACTGACACTTCTAAATGGTACTGTGAGATCTCACATTGGTTGGAGAGGGGAATGAAGCATTCCTTCTAAGGGTGTGGAAACCTCTCCCTAACAGACGCATTTTAAATTTGTGAGGTTGACGGCAATACGTAATGGGCCAAAACAGACAATATCTACTAGCGGTGGGCTTTGGTTGTTACAGTTCTAGAAAGAGTCAATCCATTATAGCTTGATATTTGATATAGAATAAGTCTCTCACTAGATAGCTAACGATGAAACCAAATTTGCTCGAGAAACTAAACAGTGATGAATGGGTCTTAAGACAGAAAATTTAATGTTCTAGTTCTCTCTCGAGTGGAAACATTATACCTCATTAGAGTTAATGATTACTGCAAATGTTGTCTCACTTGCAGGCTCCTCCTGTGATTGTGTTTTCTTCAGCTTGTGCAGGAATGGCAGGTTAGTTCTTTTATCCTTGTTTAATAACTGGAGCTGTTCTGTTCTTCTTTCTGCAAAAATGCTTCATAGAAATGCAAACACAATTGCTTTACCTTGTTAGGATGAGTAGCAATGATATGCAATGCCATTTTGTTAGCTTTGGAAACATGAACACATTTTGAGTATCAACTACTGCTCTGAAATTGGGTTAAAATACCATATTCATCTTTGTACTTCGAGCATCGAACGCATCGATCAAACTTTCAAATGTCCAAATTTAGTCGTAAAGGGGTCTGTGAAAGATGGTTTTAGGTACCAAAGTTGAGTTGATATTAAATGAATGCTTTGCAGGTGGTGCTGTTCCAGCTTTGGCCCAACTTTTTTCATCATCTTATCATTCAGCCATGTCTCCTTCAAAAGATGACAAGACTCACGATTCAAGATCATCTTCTACCATGTAATTCAATATCAACTTTTTTCTTCATCTTATCATTCAGCCATGTCTTTTCAATCTTACCCATCTAGAATATATCAATACCATATATCGTTCGTATATCAACCGTTATTTTTTGATTCAGTGAGTAATATAACAAATAAAGTATATAGAAGACGAACACCTATCTTATAAGAAATGAAACTTTAGATATATT

mRNA sequence

AATATTGAGCCACACCTGCGGCGGCTATATATCTCCCTCGCGACACCGCCCGCGGCAGCCAGCACCGCTCGACGGCGACACACTCACGACGACAACTTCTGGGTTGCGACTTCGCTGCATCGGCAAGATCTGTAACTTCAAGACCTTTATGCGGTGATCGAGACCTACAGTGACTACCTGGTGCGCTAGCTCCCCTTGTGTGATGAACCACCAAGATCCCAAGTTGGTGGCAATGTTTTTGGGAGATAGTGAAAGCGAGCAACAAGGAAAAGGCGATAGCAACCTCATTAGCAAGAGTAATATGAGATGTCAACACTGTGCGGGTCCTCTCTCGAAGGATATGGAAACCAGTGCTTGGACAATTCCTCCTCTTATTAGGGATAGTTTCTCTATGATTGGCTCTGCTGTTGGTGGTACTGCCAGTGCTTTTTATGGATTTAATCATGTGATGCCGGTTGTCCAGAGATCAGTGAAAGGGCCTATGTGGTTGCATTTTCTTATTGGTGTAAGTACCTTATTGCTTTCCATTGTTATAATTATGAACTGTTCCAAAATCTATTTCCAGGCTCCTCCTGTGATTGTGTTTTCTTCAGCTTGTGCAGGAATGGCAGGTGGTGCTGTTCCAGCTTTGGCCCAACTTTTTTCATCATCTTATCATTCAGCCATGTCTCCTTCAAAAGATGACAAGACTCACGATTCAAGATCATCTTCTACCATGTAATTCAATATCAACTTTTTTCTTCATCTTATCATTCAGCCATGTCTTTTCAATCTTACCCATCTAGAATATATCAATACCATATATCGTTCGTATATCAACCGTTATTTTTTGATTCAGTGAGTAATATAACAAATAAAGTATATAGAAGACGAACACCTATCTTATAAGAAATGAAACTTTAGATATATT

Coding sequence (CDS)

ATGAACCACCAAGATCCCAAGTTGGTGGCAATGTTTTTGGGAGATAGTGAAAGCGAGCAACAAGGAAAAGGCGATAGCAACCTCATTAGCAAGAGTAATATGAGATGTCAACACTGTGCGGGTCCTCTCTCGAAGGATATGGAAACCAGTGCTTGGACAATTCCTCCTCTTATTAGGGATAGTTTCTCTATGATTGGCTCTGCTGTTGGTGGTACTGCCAGTGCTTTTTATGGATTTAATCATGTGATGCCGGTTGTCCAGAGATCAGTGAAAGGGCCTATGTGGTTGCATTTTCTTATTGGTGTAAGTACCTTATTGCTTTCCATTGTTATAATTATGAACTGTTCCAAAATCTATTTCCAGGCTCCTCCTGTGATTGTGTTTTCTTCAGCTTGTGCAGGAATGGCAGGTGGTGCTGTTCCAGCTTTGGCCCAACTTTTTTCATCATCTTATCATTCAGCCATGTCTCCTTCAAAAGATGACAAGACTCACGATTCAAGATCATCTTCTACCATGTAA

Protein sequence

MNHQDPKLVAMFLGDSESEQQGKGDSNLISKSNMRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNHVMPVVQRSVKGPMWLHFLIGVSTLLLSIVIIMNCSKIYFQAPPVIVFSSACAGMAGGAVPALAQLFSSSYHSAMSPSKDDKTHDSRSSSTM

Homology

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BLAST of Carg12679 vs. NCBI nr
Match: KAG7027560.1 (hypothetical protein SDJN02_11574 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 337.8 bits (865), Expect = 5.5e-89
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MNHQDPKLVAMFLGDSESEQQGKGDSNLISKSNMRCQHCAGPLSKDMETSAWTIPPLIRD 60
           MNHQDPKLVAMFLGDSESEQQGKGDSNLISKSNMRCQHCAGPLSKDMETSAWTIPPLIRD
Sbjct: 1   MNHQDPKLVAMFLGDSESEQQGKGDSNLISKSNMRCQHCAGPLSKDMETSAWTIPPLIRD 60

Query: 61  SFSMIGSAVGGTASAFYGFNHVMPVVQRSVKGPMWLHFLIGVSTLLLSIVIIMNCSKIYF 120
           SFSMIGSAVGGTASAFYGFNHVMPVVQRSVKGPMWLHFLIGVSTLLLSIVIIMNCSKIYF
Sbjct: 61  SFSMIGSAVGGTASAFYGFNHVMPVVQRSVKGPMWLHFLIGVSTLLLSIVIIMNCSKIYF 120

Query: 121 QAPPVIVFSSACAGMAGGAVPALAQLFSSSYHSAMSPSKDDKTHDSRSSSTM 173
           QAPPVIVFSSACAGMAGGAVPALAQLFSSSYHSAMSPSKDDKTHDSRSSSTM
Sbjct: 121 QAPPVIVFSSACAGMAGGAVPALAQLFSSSYHSAMSPSKDDKTHDSRSSSTM 172

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BLAST of Carg12679 vs. NCBI nr
Match: XP_022925022.1 (uncharacterized protein LOC111432392 [Cucurbita moschata] >XP_023517210.1 uncharacterized protein LOC111781045 [Cucurbita pepo subsp. pepo] >KAG6595578.1 hypothetical protein SDJN03_12131, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 290.8 bits (743), Expect = 7.7e-75
Identity = 152/172 (88.37%), Postives = 152/172 (88.37%), Query Frame = 0


Query: 1   MNHQDPKLVAMFLGDSESEQQGKGDSNLISKSNMRCQHCAGPLSKDMETSAWTIPPLIRD 60
           MNHQDPKLVAMFLGDSESEQQGKGDSNLISKSNMRCQHCAGPLSKDMETSAWTIPPLIRD
Sbjct: 1   MNHQDPKLVAMFLGDSESEQQGKGDSNLISKSNMRCQHCAGPLSKDMETSAWTIPPLIRD 60

Query: 61  SFSMIGSAVGGTASAFYGFNHVMPVVQRSVKGPMWLHFLIGVSTLLLSIVIIMNCSKIYF 120
           SFSMIGSAVGGTASAFYGFNHVMPVVQRSVKGPMWLHFLIG                   
Sbjct: 61  SFSMIGSAVGGTASAFYGFNHVMPVVQRSVKGPMWLHFLIG------------------- 120

Query: 121 QAPPVIVFSSACAGMAGGAVPALAQLFSSSYHSAMSPSKDDKTHDSRSSSTM 173
            APPVIVFSSACAGMAGGAVPALAQLFSSSYHSAMSPSKDDKTHDSRSSSTM
Sbjct: 121 -APPVIVFSSACAGMAGGAVPALAQLFSSSYHSAMSPSKDDKTHDSRSSSTM 152

[Close]

BLAST of Carg12679 vs. NCBI nr
Match: XP_022966472.1 (uncharacterized protein LOC111466117 [Cucurbita maxima])

HSP 1 Score: 286.6 bits (732), Expect = 1.4e-73
Identity = 149/172 (86.63%), Postives = 152/172 (88.37%), Query Frame = 0


Query: 1   MNHQDPKLVAMFLGDSESEQQGKGDSNLISKSNMRCQHCAGPLSKDMETSAWTIPPLIRD 60
           MNHQDPKLVAMFLGDSES+QQGKGDSNLI+KSN+RCQHCAGPLSKDMETSAWTIPPLIRD
Sbjct: 1   MNHQDPKLVAMFLGDSESKQQGKGDSNLINKSNIRCQHCAGPLSKDMETSAWTIPPLIRD 60

Query: 61  SFSMIGSAVGGTASAFYGFNHVMPVVQRSVKGPMWLHFLIGVSTLLLSIVIIMNCSKIYF 120
           SFSMIGSAVGGTASAFYGFNHVMPVVQRSVKGPMWLHFLIG                   
Sbjct: 61  SFSMIGSAVGGTASAFYGFNHVMPVVQRSVKGPMWLHFLIG------------------- 120

Query: 121 QAPPVIVFSSACAGMAGGAVPALAQLFSSSYHSAMSPSKDDKTHDSRSSSTM 173
            APPVIVFSSACAGMAGGAVPALAQLFSSSYHSAMSPSKDDKTHDSRSSSTM
Sbjct: 121 -APPVIVFSSACAGMAGGAVPALAQLFSSSYHSAMSPSKDDKTHDSRSSSTM 152

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BLAST of Carg12679 vs. NCBI nr
Match: KAE8647791.1 (hypothetical protein Csa_004224 [Cucumis sativus])

HSP 1 Score: 219.5 bits (558), Expect = 2.2e-53
Identity = 118/157 (75.16%), Postives = 125/157 (79.62%), Query Frame = 0


Query: 14  GDSESEQQGKGDSNLISKSNMRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTA 73
           G S ++QQGKG +NL   SNMRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTA
Sbjct: 39  GVSVNKQQGKGYNNLTRMSNMRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTA 98

Query: 74  SAFYGFNHVMPVVQRSVKGPMWLHFLIGVSTLLLSIVIIMNCSKIYFQAPPVIVFSSACA 133
           SAFYGFN+VMPVVQRSVKGPMWLHFLIG                    APPVI+FSSACA
Sbjct: 99  SAFYGFNNVMPVVQRSVKGPMWLHFLIG--------------------APPVIIFSSACA 158

Query: 134 GMAGGAVPALAQLFSSSYHSAMSPSKDDKTHDSRSSS 171
           GM GGAVPALAQL +SSYHS  S S+DDKT DSRSSS
Sbjct: 159 GMTGGAVPALAQLVASSYHSLTSSSEDDKTQDSRSSS 175

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BLAST of Carg12679 vs. NCBI nr
Match: XP_022149788.1 (uncharacterized protein LOC111018136 isoform X1 [Momordica charantia])

HSP 1 Score: 214.2 bits (544), Expect = 9.1e-52
Identity = 113/149 (75.84%), Postives = 118/149 (79.19%), Query Frame = 0


Query: 14  GDSESEQQGKGDSNLISKSNMRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTA 73
           GDSES+ Q KGD NLI  SNMRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTA
Sbjct: 33  GDSESKLQRKGDKNLIRMSNMRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTA 92

Query: 74  SAFYGFNHVMPVVQRSVKGPMWLHFLIGVSTLLLSIVIIMNCSKIYFQAPPVIVFSSACA 133
           SAFYGFNHVMP+V+RSVKGPMWLHFLIG                    APPVIVFSSACA
Sbjct: 93  SAFYGFNHVMPIVRRSVKGPMWLHFLIG--------------------APPVIVFSSACA 152

Query: 134 GMAGGAVPALAQLFSSSYHSAMSPSKDDK 163
           GMAGG VPALAQLFS+SYHSA+  S   K
Sbjct: 153 GMAGGGVPALAQLFSTSYHSAVLTSSTFK 161

[Close]

BLAST of Carg12679 vs. ExPASy TrEMBL
Match: A0A6J1EAN3 (uncharacterized protein LOC111432392 OS=Cucurbita moschata OX=3662 GN=LOC111432392 PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 3.7e-75
Identity = 152/172 (88.37%), Postives = 152/172 (88.37%), Query Frame = 0


Query: 1   MNHQDPKLVAMFLGDSESEQQGKGDSNLISKSNMRCQHCAGPLSKDMETSAWTIPPLIRD 60
           MNHQDPKLVAMFLGDSESEQQGKGDSNLISKSNMRCQHCAGPLSKDMETSAWTIPPLIRD
Sbjct: 1   MNHQDPKLVAMFLGDSESEQQGKGDSNLISKSNMRCQHCAGPLSKDMETSAWTIPPLIRD 60

Query: 61  SFSMIGSAVGGTASAFYGFNHVMPVVQRSVKGPMWLHFLIGVSTLLLSIVIIMNCSKIYF 120
           SFSMIGSAVGGTASAFYGFNHVMPVVQRSVKGPMWLHFLIG                   
Sbjct: 61  SFSMIGSAVGGTASAFYGFNHVMPVVQRSVKGPMWLHFLIG------------------- 120

Query: 121 QAPPVIVFSSACAGMAGGAVPALAQLFSSSYHSAMSPSKDDKTHDSRSSSTM 173
            APPVIVFSSACAGMAGGAVPALAQLFSSSYHSAMSPSKDDKTHDSRSSSTM
Sbjct: 121 -APPVIVFSSACAGMAGGAVPALAQLFSSSYHSAMSPSKDDKTHDSRSSSTM 152

[Close]

BLAST of Carg12679 vs. ExPASy TrEMBL
Match: A0A6J1HN28 (uncharacterized protein LOC111466117 OS=Cucurbita maxima OX=3661 GN=LOC111466117 PE=4 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 7.0e-74
Identity = 149/172 (86.63%), Postives = 152/172 (88.37%), Query Frame = 0


Query: 1   MNHQDPKLVAMFLGDSESEQQGKGDSNLISKSNMRCQHCAGPLSKDMETSAWTIPPLIRD 60
           MNHQDPKLVAMFLGDSES+QQGKGDSNLI+KSN+RCQHCAGPLSKDMETSAWTIPPLIRD
Sbjct: 1   MNHQDPKLVAMFLGDSESKQQGKGDSNLINKSNIRCQHCAGPLSKDMETSAWTIPPLIRD 60

Query: 61  SFSMIGSAVGGTASAFYGFNHVMPVVQRSVKGPMWLHFLIGVSTLLLSIVIIMNCSKIYF 120
           SFSMIGSAVGGTASAFYGFNHVMPVVQRSVKGPMWLHFLIG                   
Sbjct: 61  SFSMIGSAVGGTASAFYGFNHVMPVVQRSVKGPMWLHFLIG------------------- 120

Query: 121 QAPPVIVFSSACAGMAGGAVPALAQLFSSSYHSAMSPSKDDKTHDSRSSSTM 173
            APPVIVFSSACAGMAGGAVPALAQLFSSSYHSAMSPSKDDKTHDSRSSSTM
Sbjct: 121 -APPVIVFSSACAGMAGGAVPALAQLFSSSYHSAMSPSKDDKTHDSRSSSTM 152

[Close]

BLAST of Carg12679 vs. ExPASy TrEMBL
Match: A0A0A0L0B0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G338930 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 5.2e-53
Identity = 117/160 (73.12%), Postives = 125/160 (78.12%), Query Frame = 0


Query: 13  LGDSESEQQGKGDSNLISKSNMRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGT 72
           LG S ++QQGKG +NL   SNMRCQHCAGPLSKDMETSAWTIPPLIRDSFSMI SAVGG 
Sbjct: 157 LGVSVNKQQGKGYNNLTRMSNMRCQHCAGPLSKDMETSAWTIPPLIRDSFSMISSAVGGI 216

Query: 73  ASAFYGFNHVMPVVQRSVKGPMWLHFLIGVSTLLLSIVIIMNCSKIYFQAPPVIVFSSAC 132
           ASAFYGFN+VMPVVQRSVKGPMWLHFLIG                    APPVI+FSSAC
Sbjct: 217 ASAFYGFNNVMPVVQRSVKGPMWLHFLIG--------------------APPVIIFSSAC 276

Query: 133 AGMAGGAVPALAQLFSSSYHSAMSPSKDDKTHDSRSSSTM 173
           AGM GGAVPALAQL SSSYHS  S S+DDK  DSRSSS++
Sbjct: 277 AGMTGGAVPALAQLVSSSYHSLTSSSEDDKAQDSRSSSSL 296

[Close]

BLAST of Carg12679 vs. ExPASy TrEMBL
Match: A0A6J1D7Q1 (uncharacterized protein LOC111018136 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111018136 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 4.4e-52
Identity = 113/149 (75.84%), Postives = 118/149 (79.19%), Query Frame = 0


Query: 14  GDSESEQQGKGDSNLISKSNMRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTA 73
           GDSES+ Q KGD NLI  SNMRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTA
Sbjct: 33  GDSESKLQRKGDKNLIRMSNMRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTA 92

Query: 74  SAFYGFNHVMPVVQRSVKGPMWLHFLIGVSTLLLSIVIIMNCSKIYFQAPPVIVFSSACA 133
           SAFYGFNHVMP+V+RSVKGPMWLHFLIG                    APPVIVFSSACA
Sbjct: 93  SAFYGFNHVMPIVRRSVKGPMWLHFLIG--------------------APPVIVFSSACA 152

Query: 134 GMAGGAVPALAQLFSSSYHSAMSPSKDDK 163
           GMAGG VPALAQLFS+SYHSA+  S   K
Sbjct: 153 GMAGGGVPALAQLFSTSYHSAVLTSSTFK 161

[Close]

BLAST of Carg12679 vs. ExPASy TrEMBL
Match: A0A1S4E0V5 (uncharacterized protein LOC103495968 OS=Cucumis melo OX=3656 GN=LOC103495968 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 3.2e-50
Identity = 111/141 (78.72%), Postives = 114/141 (80.85%), Query Frame = 0


Query: 32  SNMRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNHVMPVVQRSVK 91
           SNMRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFN VMPVVQRSVK
Sbjct: 2   SNMRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNTVMPVVQRSVK 61

Query: 92  GPMWLHFLIGVSTLLLSIVIIMNCSKIYFQAPPVIVFSSACAGMAGGAVPALAQLFSSSY 151
           GPMWLHFLIG                    APPVIVFSSACAGM GGAVPALAQL +SSY
Sbjct: 62  GPMWLHFLIG--------------------APPVIVFSSACAGMTGGAVPALAQLVASSY 121

Query: 152 HSAMSPSKDDKTHDSRSSSTM 173
           HS  S SKDDK+ DSRSSST+
Sbjct: 122 HSLTSSSKDDKSRDSRSSSTL 122

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BLAST of Carg12679 vs. TAIR 10
Match: AT3G04040.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G18250.1); Has 58 Blast hits to 58 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 158.7 bits (400), Expect = 4.2e-39
Identity = 84/141 (59.57%), Postives = 102/141 (72.34%), Query Frame = 0


Query: 35  RCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNHVMPVVQRSVKGPM 94
           RC HCAGPL+K++ET+ WT+ P IRDSFSMIGSAVGGTASAF GF+HVMP+V++ +KGPM
Sbjct: 15  RCHHCAGPLTKNLETNEWTVAPFIRDSFSMIGSAVGGTASAFIGFHHVMPIVRKWIKGPM 74

Query: 95  WLHFLIGVSTLLLSIVIIMNCSKIYFQAPPVIVFSSACAGMAGGAVPALAQLFSSSYHSA 154
           WLHFL+G                    APPVIV SSACAG+AGGAVPALAQL SSSYH+A
Sbjct: 75  WLHFLVG--------------------APPVIVVSSACAGLAGGAVPALAQLASSSYHAA 134

Query: 155 MSPSKDDKTHDS---RSSSTM 173
           +  S+  +  D     +SST+
Sbjct: 135 VHSSQPPQGQDKNQLHNSSTI 135

[Close]

BLAST of Carg12679 vs. TAIR 10
Match: AT5G18250.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 156.0 bits (393), Expect = 2.7e-38
Identity = 84/142 (59.15%), Postives = 99/142 (69.72%), Query Frame = 0


Query: 34  MRCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNHVMPVVQRSVKGP 93
           +RC HCAGPL++++ETS WT+ P IRDSFSMIGSAVGGTASAF GFNH MP+V++ +KGP
Sbjct: 10  IRCHHCAGPLTRNLETSKWTVDPFIRDSFSMIGSAVGGTASAFIGFNHAMPIVRKWIKGP 69

Query: 94  MWLHFLIGVSTLLLSIVIIMNCSKIYFQAPPVIVFSSACAGMAGGAVPALAQLFSSSY-- 153
           MWLHFL+G                    APPVIV SSACAG+AGG VPALAQL SSSY  
Sbjct: 70  MWLHFLVG--------------------APPVIVLSSACAGLAGGTVPALAQLASSSYRA 129

Query: 154 --HSAMSP--SKDDKTHDSRSS 170
             HS+  P   KD+K   S +S
Sbjct: 130 AVHSSQPPQAQKDNKMQKSTTS 131

[Close]

BLAST of Carg12679 vs. TAIR 10
Match: AT2G41945.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04040.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 65.5 bits (158), Expect = 4.9e-11
Identity = 40/124 (32.26%), Postives = 60/124 (48.39%), Query Frame = 0


Query: 35  RCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNHVMPVVQRSVKGPM 94
           RC  C   L+ + E   WTI P++ D+ ++ GS +GG  SA + FN  +P +Q    G  
Sbjct: 30  RCPRCLSLLNPNSEKGEWTITPVLHDAAAVAGSGIGGLLSAVHAFNTGIPYLQNRFSGSK 89

Query: 95  WLHFLIGVSTLLLSIVIIMNCSKIYFQAPPVIVFSSACAGMAGGAVPALAQLFSSSYHSA 154
            L FL+GV                    P ++V+S   A   G A+P  AQL  +SY+++
Sbjct: 90  RLSFLVGV--------------------PLLLVYSGVGAAFGGYALPKFAQLTVTSYYAS 133

Query: 155 MSPS 159
            S S
Sbjct: 150 SSAS 133

[Close]

BLAST of Carg12679 vs. TAIR 10
Match: AT2G41945.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04040.1); Has 57 Blast hits to 57 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 65.5 bits (158), Expect = 4.9e-11
Identity = 40/124 (32.26%), Postives = 60/124 (48.39%), Query Frame = 0


Query: 35  RCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNHVMPVVQRSVKGPM 94
           RC  C   L+ + E   WTI P++ D+ ++ GS +GG  SA + FN  +P +Q    G  
Sbjct: 30  RCPRCLSLLNPNSEKGEWTITPVLHDAAAVAGSGIGGLLSAVHAFNTGIPYLQNRFSGSK 89

Query: 95  WLHFLIGVSTLLLSIVIIMNCSKIYFQAPPVIVFSSACAGMAGGAVPALAQLFSSSYHSA 154
            L FL+GV                    P ++V+S   A   G A+P  AQL  +SY+++
Sbjct: 90  RLSFLVGV--------------------PLLLVYSGVGAAFGGYALPKFAQLTVTSYYAS 133

Query: 155 MSPS 159
            S S
Sbjct: 150 SSAS 133

[Close]

BLAST of Carg12679 vs. TAIR 10
Match: AT2G41945.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G18250.1); Has 57 Blast hits to 57 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 56.6 bits (135), Expect = 2.3e-08
Identity = 43/142 (30.28%), Postives = 64/142 (45.07%), Query Frame = 0


Query: 35  RCQHCAGPLSKDMETSAWTIPPLIRDSFSMIGSAVGGTASAFYGFNHVMPVVQRSVKGPM 94
           RC  C   L+ + E   WTI P++ D+ ++ GS +GG  SA + FN  +P +Q    G  
Sbjct: 30  RCPRCLSLLNPNSEKGEWTITPVLHDAAAVAGSGIGGLLSAVHAFNTGIPYLQNRFSGSK 89

Query: 95  WLHFLIGVSTLLL------------------SIVIIMNCSKIYFQAPPVIVFSSACAGMA 154
            L FL+GV  LL+                   IV +   S+   Q        S    + 
Sbjct: 90  RLSFLVGVPLLLVYSGVGAAFGESLQAAISFPIVWLEYESRCAAQCRIATFTFSLLFDVP 149

Query: 155 GGAVPALAQLFSSSYHSAMSPS 159
           G A+P  AQL  +SY+++ S S
Sbjct: 150 GYALPKFAQLTVTSYYASSSAS 171

The following BLAST results are available for this feature:

BLAST of Carg12679 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7027560.1	5.5e-89	100.00	hypothetical protein SDJN02_11574 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022925022.1	7.7e-75	88.37	uncharacterized protein LOC111432392 [Cucurbita moschata] >XP_023517210.1 unchar...	[more]
XP_022966472.1	1.4e-73	86.63	uncharacterized protein LOC111466117 [Cucurbita maxima]	[more]
KAE8647791.1	2.2e-53	75.16	hypothetical protein Csa_004224 [Cucumis sativus]	[more]
XP_022149788.1	9.1e-52	75.84	uncharacterized protein LOC111018136 isoform X1 [Momordica charantia]	[more]

BLAST of Carg12679 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg12679 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EAN3	3.7e-75	88.37	uncharacterized protein LOC111432392 OS=Cucurbita moschata OX=3662 GN=LOC1114323...	[more]
A0A6J1HN28	7.0e-74	86.63	uncharacterized protein LOC111466117 OS=Cucurbita maxima OX=3661 GN=LOC111466117...	[more]
A0A0A0L0B0	5.2e-53	73.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G338930 PE=4 SV=1	[more]
A0A6J1D7Q1	4.4e-52	75.84	uncharacterized protein LOC111018136 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A1S4E0V5	3.2e-50	78.72	uncharacterized protein LOC103495968 OS=Cucumis melo OX=3656 GN=LOC103495968 PE=...	[more]

BLAST of Carg12679 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G04040.1	4.2e-39	59.57	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G18250.1	2.7e-38	59.15	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G41945.1	4.9e-11	32.26	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G41945.2	4.9e-11	32.26	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G41945.3	2.3e-08	30.28	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 152..172
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 157..172
None	No IPR available	PANTHER	PTHR34459	OS01G0264500 PROTEIN	coord: 30..171
None	No IPR available	PANTHER	PTHR34459:SF3	OS01G0264500 PROTEIN	coord: 30..171

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12679-RA	Carg12679-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane