Carg12677 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg12677
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	late embryogenesis abundant protein 46
Location	Carg_Chr07: 7309796 .. 7310909 (+)
RNA-Seq Expression	Carg12677
Synteny	Carg12677

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAGAAGAACTTCAAAAATGCAATCAGGAAAGAACGCAATGGAATCCATGAAGGAATCGGCTGCCAATGTCGCAGCCTCGGCGAAGGCTGGCATGGATAAGACCAAAGCCACCGTTCAAGAGAAGGTATAGTTTGAGCTTATCCCTTTCAAATGTGTTTATAAGTCATACGAGACATTTTGAAGAAATCTAAAGTAAATCTACGAGAGATTATACTCAAAGTGGACAATATCTTCGATTGTGGGGACTCGTTATTCATGTTTGTTCATGTTTATCGGAGCCATAACCTTAATCTAGCCAAGGACTCCAAAAAAACGAGTCGAGCCTCGATTAAGGGAGGCTTTTCGAGGGCTACGTAGACCTCAAGGGAGGCTCTATCGTGTACTTCCTTCCACTCTTGAAGATCATAAATTTATAAGTGAGAAATGCTATCTTTATTGGACGGAAATTTCAAATGAAAGCTATGAGAACTTATGCTCAAAGTAAACAATATCATACCGTAGTACGAGATAAAACTGATTGAATAATGCTCTCTTTTTTACTGATTATATAGATGGAGAAGGTGACGGCGCGTGACCCTTTAGCCAAAGAGATCGCAGAAGAGAAGAAACAGGCGAAAATTCATGAGGCGGAGCTCCACAAACAGGAGGCGCGTGAACACAACGCCGCCATGAAACAGGCTACAACTGCGACGGCCACTCACGGGATGCACCCGACAACTCATGGGACAGCGACGTACTCAACCACCGGAGCTCAGGGCTACACCACCGGGACCCAGCAGATGTCAGCCGTGCCTGGACACGGAACTGGGCAACCGACCGGCCAAGTAACGGAGGGTGTGGTGGGGACACATCCGATCGGACACCAGACTGGCACTGGGAGAACAACGACAGCCCACAACCCCAATGTCGGCGGCGGCGGCGGCGATGCAACTCGTTACAGCACCGGCGGCGGGTATAGTTAAGATGGGAAGTTTGTTGGGTTTGGTACAATAATAAGTGGGCTTCGTGTTGTTTTAAGGTTGAAGTCCAACGAGTTTGTGTTTGGTTTTAGGGTTTTTATGTTATGTATTGTTGTTTATGGTTTGGATTGTTTTGTTTTGTTTTGTTTTGTT

mRNA sequence

CAAAGAAGAACTTCAAAAATGCAATCAGGAAAGAACGCAATGGAATCCATGAAGGAATCGGCTGCCAATGTCGCAGCCTCGGCGAAGGCTGGCATGGATAAGACCAAAGCCACCGTTCAAGAGAAGATGGAGAAGGTGACGGCGCGTGACCCTTTAGCCAAAGAGATCGCAGAAGAGAAGAAACAGGCGAAAATTCATGAGGCGGAGCTCCACAAACAGGAGGCGCGTGAACACAACGCCGCCATGAAACAGGCTACAACTGCGACGGCCACTCACGGGATGCACCCGACAACTCATGGGACAGCGACGTACTCAACCACCGGAGCTCAGGGCTACACCACCGGGACCCAGCAGATGTCAGCCGTGCCTGGACACGGAACTGGGCAACCGACCGGCCAAGTAACGGAGGGTGTGGTGGGGACACATCCGATCGGACACCAGACTGGCACTGGGAGAACAACGACAGCCCACAACCCCAATGTCGGCGGCGGCGGCGGCGATGCAACTCGTTACAGCACCGGCGGCGGGTATAGTTAAGATGGGAAGTTTGTTGGGTTTGGTACAATAATAAGTGGGCTTCGTGTTGTTTTAAGGTTGAAGTCCAACGAGTTTGTGTTTGGTTTTAGGGTTTTTATGTTATGTATTGTTGTTTATGGTTTGGATTGTTTTGTTTTGTTTTGTTTTGTT

Coding sequence (CDS)

ATGCAATCAGGAAAGAACGCAATGGAATCCATGAAGGAATCGGCTGCCAATGTCGCAGCCTCGGCGAAGGCTGGCATGGATAAGACCAAAGCCACCGTTCAAGAGAAGATGGAGAAGGTGACGGCGCGTGACCCTTTAGCCAAAGAGATCGCAGAAGAGAAGAAACAGGCGAAAATTCATGAGGCGGAGCTCCACAAACAGGAGGCGCGTGAACACAACGCCGCCATGAAACAGGCTACAACTGCGACGGCCACTCACGGGATGCACCCGACAACTCATGGGACAGCGACGTACTCAACCACCGGAGCTCAGGGCTACACCACCGGGACCCAGCAGATGTCAGCCGTGCCTGGACACGGAACTGGGCAACCGACCGGCCAAGTAACGGAGGGTGTGGTGGGGACACATCCGATCGGACACCAGACTGGCACTGGGAGAACAACGACAGCCCACAACCCCAATGTCGGCGGCGGCGGCGGCGATGCAACTCGTTACAGCACCGGCGGCGGGTATAGTTAA

Protein sequence

MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIHEAELHKQEAREHNAAMKQATTATATHGMHPTTHGTATYSTTGAQGYTTGTQQMSAVPGHGTGQPTGQVTEGVVGTHPIGHQTGTGRTTTAHNPNVGGGGGDATRYSTGGGYS

Homology

[Close]

BLAST of Carg12677 vs. NCBI nr
Match: KAG6595576.1 (18 kDa seed maturation protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027558.1 18 kDa seed maturation protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 314.3 bits (804), Expect = 6.5e-82
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH 60
           MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH
Sbjct: 1   MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH 60

Query: 61  EAELHKQEAREHNAAMKQATTATATHGMHPTTHGTATYSTTGAQGYTTGTQQMSAVPGHG 120
           EAELHKQEAREHNAAMKQATTATATHGMHPTTHGTATYSTTGAQGYTTGTQQMSAVPGHG
Sbjct: 61  EAELHKQEAREHNAAMKQATTATATHGMHPTTHGTATYSTTGAQGYTTGTQQMSAVPGHG 120

Query: 121 TGQPTGQVTEGVVGTHPIGHQTGTGRTTTAHNPNVGGGGGDATRYSTGGGYS 173
           TGQPTGQVTEGVVGTHPIGHQTGTGRTTTAHNPNVGGGGGDATRYSTGGGYS
Sbjct: 121 TGQPTGQVTEGVVGTHPIGHQTGTGRTTTAHNPNVGGGGGDATRYSTGGGYS 172

[Close]

BLAST of Carg12677 vs. NCBI nr
Match: XP_022924969.1 (late embryogenesis abundant protein 46 [Cucurbita moschata] >XP_023518250.1 late embryogenesis abundant protein 46 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 308.1 bits (788), Expect = 4.6e-80
Identity = 171/172 (99.42%), Postives = 171/172 (99.42%), Query Frame = 0


Query: 1   MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH 60
           MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH
Sbjct: 1   MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH 60

Query: 61  EAELHKQEAREHNAAMKQATTATATHGMHPTTHGTATYSTTGAQGYTTGTQQMSAVPGHG 120
           EAELHKQEAREHNAAMKQATTATATHGMHPTTHGTATYSTTGAQGYTTGTQQMSAVPGHG
Sbjct: 61  EAELHKQEAREHNAAMKQATTATATHGMHPTTHGTATYSTTGAQGYTTGTQQMSAVPGHG 120

Query: 121 TGQPTGQVTEGVVGTHPIGHQTGTGRTTTAHNPNVGGGGGDATRYSTGGGYS 173
           TGQPTGQVTEGVVGTHPIGHQTGTGRTTTAHNPNV GGGGDATRYSTGGGYS
Sbjct: 121 TGQPTGQVTEGVVGTHPIGHQTGTGRTTTAHNPNV-GGGGDATRYSTGGGYS 171

[Close]

BLAST of Carg12677 vs. NCBI nr
Match: XP_022966467.1 (late embryogenesis abundant protein 46 [Cucurbita maxima])

HSP 1 Score: 300.8 bits (769), Expect = 7.4e-78
Identity = 167/172 (97.09%), Postives = 169/172 (98.26%), Query Frame = 0


Query: 1   MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH 60
           MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH
Sbjct: 1   MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH 60

Query: 61  EAELHKQEAREHNAAMKQATTATATHGMHPTTHGTATYSTTGAQGYTTGTQQMSAVPGHG 120
           EAELHKQEAR+HNAAMKQATTATATHGMHPTTHGTATYSTTGAQGYTTGTQQMSAVPGHG
Sbjct: 61  EAELHKQEARQHNAAMKQATTATATHGMHPTTHGTATYSTTGAQGYTTGTQQMSAVPGHG 120

Query: 121 TGQPTGQVTEGVVGTHPIGHQTGTGRTTTAHNPNVGGGGGDATRYSTGGGYS 173
           TGQPT +VTEGVVGTHPIGHQTGTGRTTTAHNPNV  GGGDATRYSTGGGYS
Sbjct: 121 TGQPTDRVTEGVVGTHPIGHQTGTGRTTTAHNPNV--GGGDATRYSTGGGYS 170

[Close]

BLAST of Carg12677 vs. NCBI nr
Match: KGN54793.1 (hypothetical protein Csa_011934 [Cucumis sativus])

HSP 1 Score: 249.6 bits (636), Expect = 2.0e-62
Identity = 144/174 (82.76%), Postives = 153/174 (87.93%), Query Frame = 0


Query: 1   MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH 60
           MQSGK A+ESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKK+AKIH
Sbjct: 1   MQSGKKAVESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKEAKIH 60

Query: 61  EAELHKQEAREHNAAMKQATT--ATATHGMHPTTHGTATYSTTGAQGYTTGTQQMSAVPG 120
           EAEL+KQEAR+HNAA++QA T  A ATHG HPTTH TATYSTTGA GYTTGTQQ SA+PG
Sbjct: 61  EAELNKQEARQHNAAVRQAATGAAAATHGTHPTTHSTATYSTTGAHGYTTGTQQTSALPG 120

Query: 121 HGTGQPTGQVTEGVVGTHPIGHQTGTGRTTTAHNPNVGGGGGDATRYSTGGGYS 173
           HGTGQPTG VTEGVVG HPIG +TGTGRTTTAHNP  GGG G  T   TGG Y+
Sbjct: 121 HGTGQPTGLVTEGVVGAHPIGTETGTGRTTTAHNPLAGGGTGYGTGTRTGGSYT 174

[Close]

BLAST of Carg12677 vs. NCBI nr
Match: XP_004146409.2 (18 kDa seed maturation protein [Cucumis sativus])

HSP 1 Score: 245.7 bits (626), Expect = 2.8e-61
Identity = 144/186 (77.42%), Postives = 154/186 (82.80%), Query Frame = 0


Query: 1   MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH 60
           MQSGK A+ESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKK+AKIH
Sbjct: 1   MQSGKKAVESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKEAKIH 60

Query: 61  EAELHKQEAREHNAAMKQATT--------------ATATHGMHPTTHGTATYSTTGAQGY 120
           EAEL+KQEAR+HNAA++QA T              +TATHG HPTTH TATYSTTGA GY
Sbjct: 61  EAELNKQEARQHNAAVRQAATGAAAATHGTHPTTHSTATHGTHPTTHSTATYSTTGAHGY 120

Query: 121 TTGTQQMSAVPGHGTGQPTGQVTEGVVGTHPIGHQTGTGRTTTAHNPNVGGGGGDATRYS 173
           TTGTQQ SA+PGHGTGQPTG VTEGVVG HPIG +TGTGRTTTAHNP  GGG G  T   
Sbjct: 121 TTGTQQTSALPGHGTGQPTGLVTEGVVGAHPIGTETGTGRTTTAHNPLAGGGTGYGTGTR 180

[Close]

BLAST of Carg12677 vs. ExPASy Swiss-Prot
Match: Q01417 (18 kDa seed maturation protein OS=Glycine max OX=3847 GN=GMPM1 PE=2 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 3.7e-40
Identity = 106/173 (61.27%), Postives = 123/173 (71.10%), Query Frame = 0


Query: 1   MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH 60
           MQ GK A ES+KE+A N+ ASAKAGM+KTKATVQEK E++TARDP+ KE+A +KK+AK++
Sbjct: 1   MQGGKKAGESIKETATNIGASAKAGMEKTKATVQEKAERMTARDPVQKELATQKKEAKMN 60

Query: 61  EAELHKQEAREHNAAMKQATTATA--THGMHP--TTHGTATYSTTGAQGYTTGTQQMSAV 120
           +AEL KQ AR+HN A KQ+ T      HG H   T  GTATYSTTG  G   G  Q SA+
Sbjct: 61  QAELDKQAARQHNTAAKQSATTAGHMGHGHHTTGTGTGTATYSTTGEYGQPMGAHQTSAM 120

Query: 121 PGHGTGQPTGQVTEGVVGTHPIGHQTGTGRTTTAHNPNVGGGGGDATRYSTGG 170
           PGHGTGQPTG VTEGVVG+HPIG   G G T TAHN   GG   D   Y TGG
Sbjct: 121 PGHGTGQPTGHVTEGVVGSHPIGTNRGPGGTATAHNTRAGGKPND-YGYGTGG 172

[Close]

BLAST of Carg12677 vs. ExPASy Swiss-Prot
Match: Q9FG31 (Late embryogenesis abundant protein 46 OS=Arabidopsis thaliana OX=3702 GN=LEA46 PE=2 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.0e-38
Identity = 100/165 (60.61%), Postives = 126/165 (76.36%), Query Frame = 0


Query: 8   MESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIHEAELHKQ 67
           M+SMKE+A+N+AASAK+GMDKTKAT++EK EK+  RDP+ K++A + K+ KI++AE+ K+
Sbjct: 1   MQSMKETASNIAASAKSGMDKTKATLEEKAEKMKTRDPVQKQMATQVKEDKINQAEMQKR 60

Query: 68  EAREHNAAMKQATTATATHGMHPTTHGTATYSTTGAQGYTTGTQQMSAVPGHGTGQPTGQ 127
           E R+HNAAMK+A  A    G+     GTAT+STTG  G+ TGT QMSA+PGHGTGQ T +
Sbjct: 61  ETRQHNAAMKEAAGAGTGLGL-----GTATHSTTGQVGHGTGTHQMSALPGHGTGQLTDR 120

Query: 128 VTEGVVGTHPIGHQTGTGRTTTAHNPNVGGGGGDATRYSTGGGYS 173
           V EG   T PIG  TGTGR TTAHN +VGGGG  AT Y TGGGY+
Sbjct: 121 VVEGTAVTDPIGRNTGTGR-TTAHNTHVGGGG--ATGYGTGGGYT 157

[Close]

BLAST of Carg12677 vs. ExPASy Swiss-Prot
Match: P46515 (11 kDa late embryogenesis abundant protein OS=Helianthus annuus OX=4232 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.1e-20
Identity = 67/110 (60.91%), Postives = 80/110 (72.73%), Query Frame = 0


Query: 1   MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH 60
           MQSGKNA  S KE+AANVAASAKAGM+KTKA++QEK EK+TA DP+ KE+A EKK+ + H
Sbjct: 1   MQSGKNAAASAKETAANVAASAKAGMEKTKASLQEKGEKMTAHDPMQKEMAREKKEERKH 60

Query: 61  EAELHKQEAREHNAAMKQATTATATHGMHPTTHGTATYSTTGAQGYTTGT 111
           EAE  KQ A+EHNAA KQ TT   T        GT +Y+TT   G+ TGT
Sbjct: 61  EAEYEKQAAKEHNAAQKQ-TTGIGT--------GTHSYTTTNVTGHRTGT 101

[Close]

BLAST of Carg12677 vs. ExPASy Swiss-Prot
Match: Q00747 (Protein LE25 OS=Solanum lycopersicum OX=4081 GN=LE25 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.8e-09
Identity = 46/102 (45.10%), Postives = 62/102 (60.78%), Query Frame = 0


Query: 1   MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH 60
           MQ+GK+A           A++AKAGM+KTKA VQEK E++T RDPL KE+A EKK+ ++ 
Sbjct: 1   MQTGKDA-----------ASAAKAGMEKTKANVQEKAERMTTRDPLKKEMATEKKEDRVA 60

Query: 61  EAELHKQEAREHNAAMKQATTATATHGMHPTTHGTATYSTTG 103
            AE+ K++A+  +AA KQ    T T        GT  Y  TG
Sbjct: 61  AAEMGKRDAKAQHAAEKQGAATTGT--------GTTGYGATG 83

[Close]

BLAST of Carg12677 vs. ExPASy Swiss-Prot
Match: P09441 (Late embryogenesis abundant protein D-113 OS=Gossypium hirsutum OX=3635 PE=2 SV=2)

HSP 1 Score: 56.2 bits (134), Expect = 4.2e-07
Identity = 63/169 (37.28%), Postives = 88/169 (52.07%), Query Frame = 0


Query: 8   MESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIHEAELHKQ 67
           M+SMK++    AASAKAGM+K KA++QEK++++  RDP  KE+A E+K+ +  +AEL KQ
Sbjct: 1   MQSMKDA----AASAKAGMEKAKASMQEKVDQMKTRDPNEKEMARERKEERQEDAELRKQ 60

Query: 68  EAREHNAAMKQATTATATH----GMHPTTHGTATYSTTGAQGY-TTGTQQMSAVPGHGTG 127
           EAR HN        ATA H    G+  T + TA Y+     GY  TG       P  G+G
Sbjct: 61  EARHHN--------ATAGHVGGGGIGGTGYTTAGYNIGDTGGYGGTGGHDNRGYPTAGSG 120

Query: 128 QPTGQVTEGVVGTHPIGHQTGTGRTTTAHN--PNVGGGGGDATRYSTGG 170
             TG+  +  + +   G  T     TT +   PN         R + GG
Sbjct: 121 YDTGRQDD--LSSMGFGGDTEGAYGTTGNQDFPNAASNNAGTRRNTRGG 155

[Close]

BLAST of Carg12677 vs. ExPASy TrEMBL
Match: A0A6J1EAR4 (late embryogenesis abundant protein 46 OS=Cucurbita moschata OX=3662 GN=LOC111432354 PE=3 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 2.2e-80
Identity = 171/172 (99.42%), Postives = 171/172 (99.42%), Query Frame = 0


Query: 1   MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH 60
           MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH
Sbjct: 1   MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH 60

Query: 61  EAELHKQEAREHNAAMKQATTATATHGMHPTTHGTATYSTTGAQGYTTGTQQMSAVPGHG 120
           EAELHKQEAREHNAAMKQATTATATHGMHPTTHGTATYSTTGAQGYTTGTQQMSAVPGHG
Sbjct: 61  EAELHKQEAREHNAAMKQATTATATHGMHPTTHGTATYSTTGAQGYTTGTQQMSAVPGHG 120

Query: 121 TGQPTGQVTEGVVGTHPIGHQTGTGRTTTAHNPNVGGGGGDATRYSTGGGYS 173
           TGQPTGQVTEGVVGTHPIGHQTGTGRTTTAHNPNV GGGGDATRYSTGGGYS
Sbjct: 121 TGQPTGQVTEGVVGTHPIGHQTGTGRTTTAHNPNV-GGGGDATRYSTGGGYS 171

[Close]

BLAST of Carg12677 vs. ExPASy TrEMBL
Match: A0A6J1HN24 (late embryogenesis abundant protein 46 OS=Cucurbita maxima OX=3661 GN=LOC111466113 PE=3 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 3.6e-78
Identity = 167/172 (97.09%), Postives = 169/172 (98.26%), Query Frame = 0


Query: 1   MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH 60
           MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH
Sbjct: 1   MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH 60

Query: 61  EAELHKQEAREHNAAMKQATTATATHGMHPTTHGTATYSTTGAQGYTTGTQQMSAVPGHG 120
           EAELHKQEAR+HNAAMKQATTATATHGMHPTTHGTATYSTTGAQGYTTGTQQMSAVPGHG
Sbjct: 61  EAELHKQEARQHNAAMKQATTATATHGMHPTTHGTATYSTTGAQGYTTGTQQMSAVPGHG 120

Query: 121 TGQPTGQVTEGVVGTHPIGHQTGTGRTTTAHNPNVGGGGGDATRYSTGGGYS 173
           TGQPT +VTEGVVGTHPIGHQTGTGRTTTAHNPNV  GGGDATRYSTGGGYS
Sbjct: 121 TGQPTDRVTEGVVGTHPIGHQTGTGRTTTAHNPNV--GGGDATRYSTGGGYS 170

[Close]

BLAST of Carg12677 vs. ExPASy TrEMBL
Match: A0A0A0KZ59 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G499300 PE=3 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 9.5e-63
Identity = 144/174 (82.76%), Postives = 153/174 (87.93%), Query Frame = 0


Query: 1   MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH 60
           MQSGK A+ESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKK+AKIH
Sbjct: 1   MQSGKKAVESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKEAKIH 60

Query: 61  EAELHKQEAREHNAAMKQATT--ATATHGMHPTTHGTATYSTTGAQGYTTGTQQMSAVPG 120
           EAEL+KQEAR+HNAA++QA T  A ATHG HPTTH TATYSTTGA GYTTGTQQ SA+PG
Sbjct: 61  EAELNKQEARQHNAAVRQAATGAAAATHGTHPTTHSTATYSTTGAHGYTTGTQQTSALPG 120

Query: 121 HGTGQPTGQVTEGVVGTHPIGHQTGTGRTTTAHNPNVGGGGGDATRYSTGGGYS 173
           HGTGQPTG VTEGVVG HPIG +TGTGRTTTAHNP  GGG G  T   TGG Y+
Sbjct: 121 HGTGQPTGLVTEGVVGAHPIGTETGTGRTTTAHNPLAGGGTGYGTGTRTGGSYT 174

[Close]

BLAST of Carg12677 vs. ExPASy TrEMBL
Match: A0A5D3C2B4 (18 kDa seed maturation protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G002120 PE=3 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 4.4e-60
Identity = 140/171 (81.87%), Postives = 148/171 (86.55%), Query Frame = 0


Query: 1   MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH 60
           MQSGK AMES+KESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKK+AKIH
Sbjct: 1   MQSGKKAMESVKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKEAKIH 60

Query: 61  EAELHKQEAREHNAAMKQATT--ATATHGMHPTTHGTATYSTTGAQGYTTGTQQMSAVPG 120
           EAEL+KQEAR+HNAA++QA T  A  THG HPTTH TAT+STTGA GYTTGT QMSA+PG
Sbjct: 61  EAELNKQEARQHNAAVRQAATVGAATTHGTHPTTHSTATHSTTGAHGYTTGTHQMSALPG 120

Query: 121 HGTGQPTGQVTEGVVGTHPIGHQTGTGRTTTAHNPNVGGGGGDATRYSTGG 170
           HGTGQPTG VTEGVVG HPIG  TGTGRTTTAHNP  GG  G  T   TGG
Sbjct: 121 HGTGQPTGPVTEGVVGVHPIGTATGTGRTTTAHNPLAGGETGYGTGTRTGG 171

[Close]

BLAST of Carg12677 vs. ExPASy TrEMBL
Match: A0A1S3B5R4 (18 kDa seed maturation protein OS=Cucumis melo OX=3656 GN=LOC103486081 PE=3 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 4.4e-60
Identity = 140/171 (81.87%), Postives = 148/171 (86.55%), Query Frame = 0


Query: 1   MQSGKNAMESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIH 60
           MQSGK AMES+KESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKK+AKIH
Sbjct: 1   MQSGKKAMESVKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKEAKIH 60

Query: 61  EAELHKQEAREHNAAMKQATT--ATATHGMHPTTHGTATYSTTGAQGYTTGTQQMSAVPG 120
           EAEL+KQEAR+HNAA++QA T  A  THG HPTTH TAT+STTGA GYTTGT QMSA+PG
Sbjct: 61  EAELNKQEARQHNAAVRQAATVGAATTHGTHPTTHSTATHSTTGAHGYTTGTHQMSALPG 120

Query: 121 HGTGQPTGQVTEGVVGTHPIGHQTGTGRTTTAHNPNVGGGGGDATRYSTGG 170
           HGTGQPTG VTEGVVG HPIG  TGTGRTTTAHNP  GG  G  T   TGG
Sbjct: 121 HGTGQPTGPVTEGVVGVHPIGTATGTGRTTTAHNPLAGGETGYGTGTRTGG 171

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BLAST of Carg12677 vs. TAIR 10
Match: AT5G06760.1 (Late Embryogenesis Abundant 4-5 )

HSP 1 Score: 160.2 bits (404), Expect = 1.5e-39
Identity = 100/165 (60.61%), Postives = 126/165 (76.36%), Query Frame = 0


Query: 8   MESMKESAANVAASAKAGMDKTKATVQEKMEKVTARDPLAKEIAEEKKQAKIHEAELHKQ 67
           M+SMKE+A+N+AASAK+GMDKTKAT++EK EK+  RDP+ K++A + K+ KI++AE+ K+
Sbjct: 1   MQSMKETASNIAASAKSGMDKTKATLEEKAEKMKTRDPVQKQMATQVKEDKINQAEMQKR 60

Query: 68  EAREHNAAMKQATTATATHGMHPTTHGTATYSTTGAQGYTTGTQQMSAVPGHGTGQPTGQ 127
           E R+HNAAMK+A  A    G+     GTAT+STTG  G+ TGT QMSA+PGHGTGQ T +
Sbjct: 61  ETRQHNAAMKEAAGAGTGLGL-----GTATHSTTGQVGHGTGTHQMSALPGHGTGQLTDR 120

Query: 128 VTEGVVGTHPIGHQTGTGRTTTAHNPNVGGGGGDATRYSTGGGYS 173
           V EG   T PIG  TGTGR TTAHN +VGGGG  AT Y TGGGY+
Sbjct: 121 VVEGTAVTDPIGRNTGTGR-TTAHNTHVGGGG--ATGYGTGGGYT 157

The following BLAST results are available for this feature:

BLAST of Carg12677 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6595576.1	6.5e-82	100.00	18 kDa seed maturation protein, partial [Cucurbita argyrosperma subsp. sororia] ...	[more]
XP_022924969.1	4.6e-80	99.42	late embryogenesis abundant protein 46 [Cucurbita moschata] >XP_023518250.1 late...	[more]
XP_022966467.1	7.4e-78	97.09	late embryogenesis abundant protein 46 [Cucurbita maxima]	[more]
KGN54793.1	2.0e-62	82.76	hypothetical protein Csa_011934 [Cucumis sativus]	[more]
XP_004146409.2	2.8e-61	77.42	18 kDa seed maturation protein [Cucumis sativus]	[more]

BLAST of Carg12677 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q01417	3.7e-40	61.27	18 kDa seed maturation protein OS=Glycine max OX=3847 GN=GMPM1 PE=2 SV=1	[more]
Q9FG31	2.0e-38	60.61	Late embryogenesis abundant protein 46 OS=Arabidopsis thaliana OX=3702 GN=LEA46 ...	[more]
P46515	1.1e-20	60.91	11 kDa late embryogenesis abundant protein OS=Helianthus annuus OX=4232 PE=2 SV=...	[more]
Q00747	5.8e-09	45.10	Protein LE25 OS=Solanum lycopersicum OX=4081 GN=LE25 PE=2 SV=1	[more]
P09441	4.2e-07	37.28	Late embryogenesis abundant protein D-113 OS=Gossypium hirsutum OX=3635 PE=2 SV=...	[more]

BLAST of Carg12677 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EAR4	2.2e-80	99.42	late embryogenesis abundant protein 46 OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]
A0A6J1HN24	3.6e-78	97.09	late embryogenesis abundant protein 46 OS=Cucurbita maxima OX=3661 GN=LOC1114661...	[more]
A0A0A0KZ59	9.5e-63	82.76	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G499300 PE=3 SV=1	[more]
A0A5D3C2B4	4.4e-60	81.87	18 kDa seed maturation protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3B5R4	4.4e-60	81.87	18 kDa seed maturation protein OS=Cucumis melo OX=3656 GN=LOC103486081 PE=3 SV=1	[more]

BLAST of Carg12677 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06760.1	1.5e-39	60.61	Late Embryogenesis Abundant 4-5	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 48..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..172
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..130
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 140..154
None	No IPR available	PANTHER	PTHR33493:SF2	LATE EMBRYOGENESIS ABUNDANT PROTEIN 46	coord: 8..171
IPR005513	Late embryogenesis abundant protein, LEA_1 subgroup	PFAM	PF03760	LEA_1	coord: 8..78 e-value: 5.3E-22 score: 78.2
IPR005513	Late embryogenesis abundant protein, LEA_1 subgroup	PANTHER	PTHR33493	LATE EMBRYOGENESIS ABUNDANT PROTEIN 6-RELATED	coord: 8..171

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12677-RA	Carg12677-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0009409	response to cold
biological_process	GO:0006970	response to osmotic stress
biological_process	GO:0009414	response to water deprivation