Carg12648 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg12648
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	high mobility group B protein 6-like
Location	Carg_Chr07: 7101016 .. 7101784 (+)
RNA-Seq Expression	Carg12648
Synteny	Carg12648

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGTCTCTTCTCCATCCCACGCATCTAGATCTTCATCTCAAGTCCGGCCGCCGCCCACTCCAACCGAGGAATTCGCTCTCAAATCATGTTCCTGCAGTCGCCAAAATCGTCAAATCCAAGGCGGAACGGGTAGAGATCCCGCTATCCGGAGATGCCAATAAGGAAAACGTACCGCCGATTCACGCGACGGCGACGAGGACAGAGTCATGTGATTTGTCTCTGGCGGATGAACTCAATGCGGTTAAGATGAAGCTTGAGAGATTGAGATTAGACGGTGAACGGACGGAGAAAATGTTGAGAGAGAGGGATATGGTGTTGGAGATGCGGAGGAAGGAGATTTTGCAGAGAAGTGAGGTGCAGAGGGATCTGGAGATGGAGGTCGACAGGTTATTCAGATTGAAGGAACTCAGATCGTACTGTATGGTAAACAATCTTTTTCGCGAGTTTGAAGTTTCGATTGATTGATTCGTGTTTATCTGTTGTTCGTTTGCTTAATTTGATTTGACTTGGATCAGAGAATTTCTCCGAAGCGAAGCCTCAGAGAGAAGGAGCGAGAGAAGATATTCACCGACTTACAATTTCAGGTAAATTCCGATCTCTAACCTCGAAGCTATTTCTCGATTTCTAAGTTCCGGATTCATCTGCTTCAATGTAAAATCAATCAATAATTCTCCGATATTTTCAGGAGTTTGAAATCAGCGACGAAGAAGAATCGATTGACGAGAATTCATCGTCGGATTCCTCAGAATTCGTCATAGGAATTTGA

mRNA sequence

ATGCAGTCTCTTCTCCATCCCACGCATCTAGATCTTCATCTCAAGTCCGGCCGCCGCCCACTCCAACCGAGGAATTCGCTCTCAAATCATGTTCCTGCAGTCGCCAAAATCGTCAAATCCAAGGCGGAACGGGTAGAGATCCCGCTATCCGGAGATGCCAATAAGGAAAACGTACCGCCGATTCACGCGACGGCGACGAGGACAGAGTCATGTGATTTGTCTCTGGCGGATGAACTCAATGCGGTTAAGATGAAGCTTGAGAGATTGAGATTAGACGGTGAACGGACGGAGAAAATGTTGAGAGAGAGGGATATGGTGTTGGAGATGCGGAGGAAGGAGATTTTGCAGAGAAGTGAGGTGCAGAGGGATCTGGAGATGGAGGTCGACAGGTTATTCAGATTGAAGGAACTCAGATCGTACTGTATGAGAATTTCTCCGAAGCGAAGCCTCAGAGAGAAGGAGCGAGAGAAGATATTCACCGACTTACAATTTCAGGAGTTTGAAATCAGCGACGAAGAAGAATCGATTGACGAGAATTCATCGTCGGATTCCTCAGAATTCGTCATAGGAATTTGA

Coding sequence (CDS)

ATGCAGTCTCTTCTCCATCCCACGCATCTAGATCTTCATCTCAAGTCCGGCCGCCGCCCACTCCAACCGAGGAATTCGCTCTCAAATCATGTTCCTGCAGTCGCCAAAATCGTCAAATCCAAGGCGGAACGGGTAGAGATCCCGCTATCCGGAGATGCCAATAAGGAAAACGTACCGCCGATTCACGCGACGGCGACGAGGACAGAGTCATGTGATTTGTCTCTGGCGGATGAACTCAATGCGGTTAAGATGAAGCTTGAGAGATTGAGATTAGACGGTGAACGGACGGAGAAAATGTTGAGAGAGAGGGATATGGTGTTGGAGATGCGGAGGAAGGAGATTTTGCAGAGAAGTGAGGTGCAGAGGGATCTGGAGATGGAGGTCGACAGGTTATTCAGATTGAAGGAACTCAGATCGTACTGTATGAGAATTTCTCCGAAGCGAAGCCTCAGAGAGAAGGAGCGAGAGAAGATATTCACCGACTTACAATTTCAGGAGTTTGAAATCAGCGACGAAGAAGAATCGATTGACGAGAATTCATCGTCGGATTCCTCAGAATTCGTCATAGGAATTTGA

Protein sequence

MQSLLHPTHLDLHLKSGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKENVPPIHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMRRKEILQRSEVQRDLEMEVDRLFRLKELRSYCMRISPKRSLREKEREKIFTDLQFQEFEISDEEESIDENSSSDSSEFVIGI

Homology

[Close]

BLAST of Carg12648 vs. NCBI nr
Match: KAG7027530.1 (hypothetical protein SDJN02_11544, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 354.0 bits (907), Expect = 8.2e-94
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 1   MQSLLHPTHLDLHLKSGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKENVPP 60
           MQSLLHPTHLDLHLKSGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKENVPP
Sbjct: 1   MQSLLHPTHLDLHLKSGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKENVPP 60

Query: 61  IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMRRKEILQRSEV 120
           IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMRRKEILQRSEV
Sbjct: 61  IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMRRKEILQRSEV 120

Query: 121 QRDLEMEVDRLFRLKELRSYCMRISPKRSLREKEREKIFTDLQFQEFEISDEEESIDENS 180
           QRDLEMEVDRLFRLKELRSYCMRISPKRSLREKEREKIFTDLQFQEFEISDEEESIDENS
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCMRISPKRSLREKEREKIFTDLQFQEFEISDEEESIDENS 180

Query: 181 SSDSSEFVIGI 192
           SSDSSEFVIGI
Sbjct: 181 SSDSSEFVIGI 191

[Close]

BLAST of Carg12648 vs. NCBI nr
Match: XP_022924949.1 (high mobility group B protein 6-like [Cucurbita moschata])

HSP 1 Score: 348.6 bits (893), Expect = 3.4e-92
Identity = 189/191 (98.95%), Postives = 189/191 (98.95%), Query Frame = 0


Query: 1   MQSLLHPTHLDLHLKSGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKENVPP 60
           MQSLLHPTHLDLHLKSGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKENVPP
Sbjct: 1   MQSLLHPTHLDLHLKSGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKENVPP 60

Query: 61  IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMRRKEILQRSEV 120
           IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMRRKEILQRSEV
Sbjct: 61  IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMRRKEILQRSEV 120

Query: 121 QRDLEMEVDRLFRLKELRSYCMRISPKRSLREKEREKIFTDLQFQEFEISDEEESIDENS 180
           QRDLEMEVDRLFRLKELRSYCMRIS  RSLREKEREKIFTDLQFQEFEISDEEESIDENS
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCMRISSMRSLREKEREKIFTDLQFQEFEISDEEESIDENS 180

Query: 181 SSDSSEFVIGI 192
           SSDSSEFVIGI
Sbjct: 181 SSDSSEFVIGI 191

[Close]

BLAST of Carg12648 vs. NCBI nr
Match: KAG6595551.1 (hypothetical protein SDJN03_12104, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 347.1 bits (889), Expect = 1.0e-91
Identity = 187/189 (98.94%), Postives = 188/189 (99.47%), Query Frame = 0


Query: 1   MQSLLHPTHLDLHLKSGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKENVPP 60
           MQSLLHPTHLDLHLKSGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKENVPP
Sbjct: 1   MQSLLHPTHLDLHLKSGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKENVPP 60

Query: 61  IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMRRKEILQRSEV 120
           IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMRRKEILQRSEV
Sbjct: 61  IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMRRKEILQRSEV 120

Query: 121 QRDLEMEVDRLFRLKELRSYCMRISPKRSLREKEREKIFTDLQFQEFEISDEEESIDENS 180
           QRDLEMEVDRLFRLKELRSYCMRISPKRSLREKEREKIFTDLQFQEFEISDEEESIDENS
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCMRISPKRSLREKEREKIFTDLQFQEFEISDEEESIDENS 180

Query: 181 SSDSSEFVI 190
           SSDSSEF +
Sbjct: 181 SSDSSEFFL 189

[Close]

BLAST of Carg12648 vs. NCBI nr
Match: XP_023517579.1 (high mobility group B protein 6-like [Cucurbita pepo subsp. pepo] >XP_023518497.1 high mobility group B protein 6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 344.4 bits (882), Expect = 6.5e-91
Identity = 187/191 (97.91%), Postives = 188/191 (98.43%), Query Frame = 0


Query: 1   MQSLLHPTHLDLHLKSGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKENVPP 60
           MQSLLHPTHLDLHLKSGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKEN PP
Sbjct: 1   MQSLLHPTHLDLHLKSGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKENEPP 60

Query: 61  IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMRRKEILQRSEV 120
           IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEM+RKEILQRSEV
Sbjct: 61  IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMQRKEILQRSEV 120

Query: 121 QRDLEMEVDRLFRLKELRSYCMRISPKRSLREKEREKIFTDLQFQEFEISDEEESIDENS 180
           QRDLEMEVDRLFRLKELRSYCMRISP RSLREKEREKIFTDLQFQEFEISDEEESIDE S
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCMRISPMRSLREKEREKIFTDLQFQEFEISDEEESIDEIS 180

Query: 181 SSDSSEFVIGI 192
           SSDSSEFVIGI
Sbjct: 181 SSDSSEFVIGI 191

[Close]

BLAST of Carg12648 vs. NCBI nr
Match: XP_022966463.1 (high mobility group B protein 6-like [Cucurbita maxima])

HSP 1 Score: 338.2 bits (866), Expect = 4.6e-89
Identity = 183/191 (95.81%), Postives = 186/191 (97.38%), Query Frame = 0


Query: 1   MQSLLHPTHLDLHLKSGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKENVPP 60
           MQSLLHPTHLDLHLKSGRRPLQ +NSLSNHVPAVAKIVKSK E+VEIPLSGDANKEN PP
Sbjct: 1   MQSLLHPTHLDLHLKSGRRPLQRKNSLSNHVPAVAKIVKSKGEQVEIPLSGDANKENEPP 60

Query: 61  IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMRRKEILQRSEV 120
           IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEM+RKEILQRSEV
Sbjct: 61  IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMQRKEILQRSEV 120

Query: 121 QRDLEMEVDRLFRLKELRSYCMRISPKRSLREKEREKIFTDLQFQEFEISDEEESIDENS 180
           QRDLEMEVDRLFRLKELRSYCMRISP RSLREKEREKIFTDLQFQEFE SDEEESIDENS
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCMRISPMRSLREKEREKIFTDLQFQEFETSDEEESIDENS 180

Query: 181 SSDSSEFVIGI 192
           SSDSSEFVIGI
Sbjct: 181 SSDSSEFVIGI 191

[Close]

BLAST of Carg12648 vs. ExPASy TrEMBL
Match: A0A6J1EAP1 (high mobility group B protein 6-like OS=Cucurbita moschata OX=3662 GN=LOC111432340 PE=4 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 1.7e-92
Identity = 189/191 (98.95%), Postives = 189/191 (98.95%), Query Frame = 0


Query: 1   MQSLLHPTHLDLHLKSGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKENVPP 60
           MQSLLHPTHLDLHLKSGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKENVPP
Sbjct: 1   MQSLLHPTHLDLHLKSGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKENVPP 60

Query: 61  IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMRRKEILQRSEV 120
           IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMRRKEILQRSEV
Sbjct: 61  IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMRRKEILQRSEV 120

Query: 121 QRDLEMEVDRLFRLKELRSYCMRISPKRSLREKEREKIFTDLQFQEFEISDEEESIDENS 180
           QRDLEMEVDRLFRLKELRSYCMRIS  RSLREKEREKIFTDLQFQEFEISDEEESIDENS
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCMRISSMRSLREKEREKIFTDLQFQEFEISDEEESIDENS 180

Query: 181 SSDSSEFVIGI 192
           SSDSSEFVIGI
Sbjct: 181 SSDSSEFVIGI 191

[Close]

BLAST of Carg12648 vs. ExPASy TrEMBL
Match: A0A6J1HS84 (high mobility group B protein 6-like OS=Cucurbita maxima OX=3661 GN=LOC111466110 PE=4 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 2.2e-89
Identity = 183/191 (95.81%), Postives = 186/191 (97.38%), Query Frame = 0


Query: 1   MQSLLHPTHLDLHLKSGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKENVPP 60
           MQSLLHPTHLDLHLKSGRRPLQ +NSLSNHVPAVAKIVKSK E+VEIPLSGDANKEN PP
Sbjct: 1   MQSLLHPTHLDLHLKSGRRPLQRKNSLSNHVPAVAKIVKSKGEQVEIPLSGDANKENEPP 60

Query: 61  IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMRRKEILQRSEV 120
           IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEM+RKEILQRSEV
Sbjct: 61  IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMQRKEILQRSEV 120

Query: 121 QRDLEMEVDRLFRLKELRSYCMRISPKRSLREKEREKIFTDLQFQEFEISDEEESIDENS 180
           QRDLEMEVDRLFRLKELRSYCMRISP RSLREKEREKIFTDLQFQEFE SDEEESIDENS
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCMRISPMRSLREKEREKIFTDLQFQEFETSDEEESIDENS 180

Query: 181 SSDSSEFVIGI 192
           SSDSSEFVIGI
Sbjct: 181 SSDSSEFVIGI 191

[Close]

BLAST of Carg12648 vs. ExPASy TrEMBL
Match: A0A5A7SJQ2 (High mobility group B protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1220G00510 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.7e-66
Identity = 149/192 (77.60%), Postives = 163/192 (84.90%), Query Frame = 0


Query: 1   MQSLLH--PTHLDLHLKSGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKENV 60
           MQ+L H  P+  D+ LKSGRRPLQP+NSL N VP+VAKI+KSK E ++I LSGDANKEN 
Sbjct: 1   MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH 60

Query: 61  PPIHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMRRKEILQRS 120
           PP  AT    ESCDLSLADELNAVK K+ERLRLDGERTEKMLRERD+VLE+R KE+LQRS
Sbjct: 61  PP--ATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRS 120

Query: 121 EVQRDLEMEVDRLFRLKELRSYCMRISPKRSLREKEREKIFTDLQFQEFEISDEEESIDE 180
           + QRDLEMEVDRLFRLKELRSYCMRISP RSLREKEREKIFTD QF EFEI D EES+ E
Sbjct: 121 QEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGE 180

Query: 181 NSSSDSSEFVIG 191
           NSS DSSEFV G
Sbjct: 181 NSSLDSSEFVTG 190

[Close]

BLAST of Carg12648 vs. ExPASy TrEMBL
Match: A0A5D3CEI7 (High mobility group B protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G00430 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 3.5e-66
Identity = 149/192 (77.60%), Postives = 163/192 (84.90%), Query Frame = 0


Query: 1   MQSLLH--PTHLDLHLKSGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKENV 60
           MQ+L H  P+  D+ LKSGRRPLQP+NSL N VP+VAKI+KSK E ++I LSGDANKEN 
Sbjct: 1   MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENH 60

Query: 61  PPIHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMRRKEILQRS 120
           PP  AT    ESCDLSLADELNAVK K+ERLRLDGERTEKMLRERD+VLE+R KE+LQRS
Sbjct: 61  PP--ATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRS 120

Query: 121 EVQRDLEMEVDRLFRLKELRSYCMRISPKRSLREKEREKIFTDLQFQEFEISDEEESIDE 180
           + QRDLEMEVDRLFRLKELRSYCMRISP RSLREKEREKIFTD QF EFEI D EES+ E
Sbjct: 121 QEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGE 180

Query: 181 NSSSDSSEFVIG 191
           NSS DSSEFV G
Sbjct: 181 NSSLDSSEFVTG 190

[Close]

BLAST of Carg12648 vs. ExPASy TrEMBL
Match: A0A1S3CJ78 (high mobility group B protein 6 OS=Cucumis melo OX=3656 GN=LOC103501469 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 3.5e-66
Identity = 149/192 (77.60%), Postives = 163/192 (84.90%), Query Frame = 0


Query: 1   MQSLLH--PTHLDLHLKSGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKENV 60
           MQ+L H  P+  D+ LKSGRRPLQP+NSL N VP+VAKI+KSK E ++I LSGDANKEN 
Sbjct: 1   MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENH 60

Query: 61  PPIHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMRRKEILQRS 120
           PP  AT    ESCDLSLADELNAVK K+ERLRLDGERTEKMLRERD+VLE+R KE+LQRS
Sbjct: 61  PP--ATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRS 120

Query: 121 EVQRDLEMEVDRLFRLKELRSYCMRISPKRSLREKEREKIFTDLQFQEFEISDEEESIDE 180
           + QRDLEMEVDRLFRLKELRSYCMRISP RSLREKEREKIFTD QF EFEI D EES+ E
Sbjct: 121 QEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGE 180

Query: 181 NSSSDSSEFVIG 191
           NSS DSSEFV G
Sbjct: 181 NSSLDSSEFVTG 190

[Close]

BLAST of Carg12648 vs. TAIR 10
Match: AT5G01910.1 (unknown protein; Has 66 Blast hits to 66 proteins in 27 species: Archae - 0; Bacteria - 2; Metazoa - 18; Fungi - 7; Plants - 29; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 99.0 bits (245), Expect = 4.4e-21
Identity = 77/177 (43.50%), Postives = 103/177 (58.19%), Query Frame = 0


Query: 16  SGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKENVPPIHATATRTESCDLSL 75
           SGR+ LQPRN        + +  K  A  V+ P + +  KEN+           S D SL
Sbjct: 4   SGRKALQPRN--------IYQTPKEDAFFVK-PKAAEKLKENL-------NLETSIDASL 63

Query: 76  ADELNAVKMKLERLRLDGERTEKMLRERDMVLEMRRKEILQRSEVQRDLEMEVDRLFRLK 135
           A+EL+A K KLERLR D E TEK+L+ERD  +++    +LQR E Q+ LE++VDRLFRLK
Sbjct: 64  AEELSAFKKKLERLREDRESTEKLLKERDEAMDLHMSHLLQRGETQKSLEIQVDRLFRLK 123

Query: 136 ELRSYCMRISPKRSLREKEREKIFTDLQFQEFEISDEEES-------IDENSSSDSS 186
           EL +Y  +ISP RSLR KE+++      F   E  DEE S       I+E SS+ S+
Sbjct: 124 ELHAYSSKISPIRSLRAKEQQEKMRRFTFAGEEQPDEESSVEIANGPIEEESSTKSN 164

[Close]

BLAST of Carg12648 vs. TAIR 10
Match: AT5G01910.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 96.7 bits (239), Expect = 2.2e-20
Identity = 66/142 (46.48%), Postives = 89/142 (62.68%), Query Frame = 0


Query: 16  SGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKENVPPIHATATRTESCDLSL 75
           SGR+ LQPRN        + +  K  A  V+ P + +  KEN+           S D SL
Sbjct: 4   SGRKALQPRN--------IYQTPKEDAFFVK-PKAAEKLKENL-------NLETSIDASL 63

Query: 76  ADELNAVKMKLERLRLDGERTEKMLRERDMVLEMRRKEILQRSEVQRDLEMEVDRLFRLK 135
           A+EL+A K KLERLR D E TEK+L+ERD  +++    +LQR E Q+ LE++VDRLFRLK
Sbjct: 64  AEELSAFKKKLERLREDRESTEKLLKERDEAMDLHMSHLLQRGETQKSLEIQVDRLFRLK 123

Query: 136 ELRSYCMRISPKRSLREKEREK 158
           EL +Y  +ISP RSLR KE+++
Sbjct: 124 ELHAYSSKISPIRSLRAKEQQE 129

The following BLAST results are available for this feature:

BLAST of Carg12648 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7027530.1	8.2e-94	100.00	hypothetical protein SDJN02_11544, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022924949.1	3.4e-92	98.95	high mobility group B protein 6-like [Cucurbita moschata]	[more]
KAG6595551.1	1.0e-91	98.94	hypothetical protein SDJN03_12104, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023517579.1	6.5e-91	97.91	high mobility group B protein 6-like [Cucurbita pepo subsp. pepo] >XP_023518497....	[more]
XP_022966463.1	4.6e-89	95.81	high mobility group B protein 6-like [Cucurbita maxima]	[more]

BLAST of Carg12648 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg12648 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EAP1	1.7e-92	98.95	high mobility group B protein 6-like OS=Cucurbita moschata OX=3662 GN=LOC1114323...	[more]
A0A6J1HS84	2.2e-89	95.81	high mobility group B protein 6-like OS=Cucurbita maxima OX=3661 GN=LOC111466110...	[more]
A0A5A7SJQ2	2.7e-66	77.60	High mobility group B protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3CEI7	3.5e-66	77.60	High mobility group B protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3CJ78	3.5e-66	77.60	high mobility group B protein 6 OS=Cucumis melo OX=3656 GN=LOC103501469 PE=4 SV=...	[more]

BLAST of Carg12648 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01910.1	4.4e-21	43.50	unknown protein; Has 66 Blast hits to 66 proteins in 27 species: Archae - 0; Bac...	[more]
AT5G01910.2	2.2e-20	46.48	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 170..191
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	PANTHER	PTHR36790	MYELIN TRANSCRIPTION FACTOR	coord: 11..186

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12648-RA	Carg12648-RA	mRNA