Carg12627 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg12627
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionProline-rich receptor-like protein kinase PERK2
LocationCarg_Chr07: 6957137 .. 6957505 (+)
RNA-Seq ExpressionCarg12627
SyntenyCarg12627
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCTTCCAACTACTTGATCATCGCTTTCATGGCTACTTTAGTGTTTTCGGCCATCGACACTGGCCGAGCAGCTCGTCATCTCCTGCAAATCGCTTCGCCGAGCGTGCCAGGGTTGCCCTCATTGCCTCCTCTCCCGCCGTTGCCAAACCCGACAACAGGGTCAGGAATCCCTTCTATCCCAAGCCTCCCACAACCAACGTTGCCAACTACTCAACCATCCCTCCCTAAGTTACCACCATTTCCAACCTTCCCTAGCAACATCCCGACTGGAATGGCGCTGCCTCCGCTCCCGACAACTTTGCTTCCGAACCTACCCTCGATCCCTTCCCTCACTCCCCCACCGACCACCTCCTCTTCACCTTAA

mRNA sequence

ATGGCCTCTTCCAACTACTTGATCATCGCTTTCATGGCTACTTTAGTGTTTTCGGCCATCGACACTGGCCGAGCAGCTCGTCATCTCCTGCAAATCGCTTCGCCGAGCGTGCCAGGGTTGCCCTCATTGCCTCCTCTCCCGCCGTTGCCAAACCCGACAACAGGGTCAGGAATCCCTTCTATCCCAAGCCTCCCACAACCAACGTTGCCAACTACTCAACCATCCCTCCCTAAGTTACCACCATTTCCAACCTTCCCTAGCAACATCCCGACTGGAATGGCGCTGCCTCCGCTCCCGACAACTTTGCTTCCGAACCTACCCTCGATCCCTTCCCTCACTCCCCCACCGACCACCTCCTCTTCACCTTAA

Coding sequence (CDS)

ATGGCCTCTTCCAACTACTTGATCATCGCTTTCATGGCTACTTTAGTGTTTTCGGCCATCGACACTGGCCGAGCAGCTCGTCATCTCCTGCAAATCGCTTCGCCGAGCGTGCCAGGGTTGCCCTCATTGCCTCCTCTCCCGCCGTTGCCAAACCCGACAACAGGGTCAGGAATCCCTTCTATCCCAAGCCTCCCACAACCAACGTTGCCAACTACTCAACCATCCCTCCCTAAGTTACCACCATTTCCAACCTTCCCTAGCAACATCCCGACTGGAATGGCGCTGCCTCCGCTCCCGACAACTTTGCTTCCGAACCTACCCTCGATCCCTTCCCTCACTCCCCCACCGACCACCTCCTCTTCACCTTAA

Protein sequence

MASSNYLIIAFMATLVFSAIDTGRAARHLLQIASPSVPGLPSLPPLPPLPNPTTGSGIPSIPSLPQPTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLPNLPSIPSLTPPPTTSSSP
Homology
BLAST of Carg12627 vs. NCBI nr
Match: KAG7027509.1 (hypothetical protein SDJN02_11523, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 222.2 bits (565), Expect = 2.4e-54
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0

Query: 1   MASSNYLIIAFMATLVFSAIDTGRAARHLLQIASPSVPGLPSLPPLPPLPNPTTGSGIPS 60
           MASSNYLIIAFMATLVFSAIDTGRAARHLLQIASPSVPGLPSLPPLPPLPNPTTGSGIPS
Sbjct: 1   MASSNYLIIAFMATLVFSAIDTGRAARHLLQIASPSVPGLPSLPPLPPLPNPTTGSGIPS 60

Query: 61  IPSLPQPTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLPNLPSIPSLTPPPTTSS 120
           IPSLPQPTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLPNLPSIPSLTPPPTTSS
Sbjct: 61  IPSLPQPTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLPNLPSIPSLTPPPTTSS 120

Query: 121 SP 123
           SP
Sbjct: 121 SP 122

BLAST of Carg12627 vs. NCBI nr
Match: KAG6595525.1 (hypothetical protein SDJN03_12078, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 216.9 bits (551), Expect = 1.0e-52
Identity = 120/122 (98.36%), Postives = 120/122 (98.36%), Query Frame = 0

Query: 1   MASSNYLIIAFMATLVFSAIDTGRAARHLLQIASPSVPGLPSLPPLPPLPNPTTGSGIPS 60
           MASSNYLIIAFMATLVFSAIDTGRAARHLLQIASPSVPGLPSLPPLP LPNPT GSGIPS
Sbjct: 1   MASSNYLIIAFMATLVFSAIDTGRAARHLLQIASPSVPGLPSLPPLPSLPNPTIGSGIPS 60

Query: 61  IPSLPQPTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLPNLPSIPSLTPPPTTSS 120
           IPSLPQPTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLPNLPSIPSLTPPPTTSS
Sbjct: 61  IPSLPQPTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLPNLPSIPSLTPPPTTSS 120

Query: 121 SP 123
           SP
Sbjct: 121 SP 122

BLAST of Carg12627 vs. NCBI nr
Match: XP_023518060.1 (proline-rich receptor-like protein kinase PERK2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 205.7 bits (522), Expect = 2.3e-49
Identity = 116/125 (92.80%), Postives = 118/125 (94.40%), Query Frame = 0

Query: 1   MASSNYLIIAFMATLVFSAIDTGRAARHLLQIASPSVPGLPSLPPLPPL---PNPTTGSG 60
           MAS  YLIIAF+ATLVFSAIDTGRAARHLLQ A P+VPGLPSLPPLPPL   PNPTTGSG
Sbjct: 1   MASFKYLIIAFVATLVFSAIDTGRAARHLLQTAPPNVPGLPSLPPLPPLPTMPNPTTGSG 60

Query: 61  IPSIPSLPQPTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLPNLPSIPSLTPPPT 120
           IPSIPSLPQPTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLPNLPSIPSLTPPPT
Sbjct: 61  IPSIPSLPQPTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLPNLPSIPSLTPPPT 120

Query: 121 TSSSP 123
           TSSSP
Sbjct: 121 TSSSP 125

BLAST of Carg12627 vs. NCBI nr
Match: XP_023518061.1 (protein PELPK1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 189.5 bits (480), Expect = 1.7e-44
Identity = 110/128 (85.94%), Postives = 114/128 (89.06%), Query Frame = 0

Query: 1   MASSNYLIIAFMATLVFSAIDTGRAARHLLQIASPSVPGLPSLPPLPPL---PNPTTGSG 60
           MASS YLIIAFM TL+FSAIDTGRAARHLLQ A P+VP LPSLPPLPPL   PNPTTG G
Sbjct: 1   MASSKYLIIAFMVTLMFSAIDTGRAARHLLQTAPPNVPRLPSLPPLPPLPTMPNPTTGPG 60

Query: 61  IPSIPSLPQ---PTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLPNLPSIPSLTP 120
           IPSIPSLPQ   PTLPTTQPSLPKLPP P+FP NIPTGMALPPLPTTLLPNLPSIPSLTP
Sbjct: 61  IPSIPSLPQPTLPTLPTTQPSLPKLPPLPSFPRNIPTGMALPPLPTTLLPNLPSIPSLTP 120

Query: 121 PPTTSSSP 123
           PPTT+SSP
Sbjct: 121 PPTTTSSP 128

BLAST of Carg12627 vs. NCBI nr
Match: KAG6595524.1 (hypothetical protein SDJN03_12077, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 176.0 bits (445), Expect = 2.0e-40
Identity = 104/125 (83.20%), Postives = 110/125 (88.00%), Query Frame = 0

Query: 1   MASSNYLIIAFMATLVFSAIDTGRAARHLLQIASPSVPGLPSLPPLPPL---PNPTTGSG 60
           MASS YLIIAFMATL+FSAI+TGRAARHLLQ A P+VPGLPSLPPLPPL   PNPTTG G
Sbjct: 1   MASSKYLIIAFMATLMFSAINTGRAARHLLQTAPPNVPGLPSLPPLPPLPTMPNPTTGPG 60

Query: 61  IPSIPSLPQPTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLPNLPSIPSLTPPPT 120
           IPSIPSLPQPTLPTTQPSLPKL P       +PTGMALPPLPTTLLPNLPSIPSLTPPP+
Sbjct: 61  IPSIPSLPQPTLPTTQPSLPKLSP-------LPTGMALPPLPTTLLPNLPSIPSLTPPPS 118

Query: 121 TSSSP 123
           T+SSP
Sbjct: 121 TTSSP 118

BLAST of Carg12627 vs. ExPASy TrEMBL
Match: A0A6J1J782 (uncharacterized protein LOC111483197 OS=Cucurbita maxima OX=3661 GN=LOC111483197 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.3e-34
Identity = 92/124 (74.19%), Postives = 100/124 (80.65%), Query Frame = 0

Query: 1   MASSNYLIIAFMATLVFSAIDTGRAARHLLQIASPSVPGLPSLPPLPPLPNPTTGSGIPS 60
           MASSNY I+AFMATLVFSAIDTGRAAR LLQ A PSVPGLPSLPPLPP P   T  G+PS
Sbjct: 1   MASSNYFIMAFMATLVFSAIDTGRAARRLLQTAQPSVPGLPSLPPLPPFP---TVPGMPS 60

Query: 61  IPSLPQPTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPT--TLLPNLPSIPSLTPPPTT 120
           IP+LPQPTLPTTQPSLPK+PP P+FP  IPTG+ LPPLPT  +     PSIP LTPPP  
Sbjct: 61  IPNLPQPTLPTTQPSLPKMPPLPSFPGGIPTGVTLPPLPTLPSFPTTFPSIPFLTPPPAA 120

Query: 121 SSSP 123
           +SSP
Sbjct: 121 TSSP 121

BLAST of Carg12627 vs. ExPASy TrEMBL
Match: A0A6J1E948 (uncharacterized protein LOC111430528 OS=Cucurbita moschata OX=3662 GN=LOC111430528 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 5.2e-31
Identity = 87/118 (73.73%), Postives = 96/118 (81.36%), Query Frame = 0

Query: 9   IAFMATLVFSAIDTGRAARHLLQIASPSVPGLPSLPPLPPLPNPTTGSGIPSIPSLPQPT 68
           +AFMATLVFSAIDTGRAAR LLQ A PSVPGLPSLPPLPP P   T  G+PSIP+LPQPT
Sbjct: 1   MAFMATLVFSAIDTGRAARRLLQTAQPSVPGLPSLPPLPPFP---TVPGMPSIPNLPQPT 60

Query: 69  LPTTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLPN----LPSIPSLTPPPTTSSSP 123
           LPTTQPSLPK+PP P+FP +IPTG+ LPPLPT  LP+     PSIP LTPPP  +SSP
Sbjct: 61  LPTTQPSLPKMPPLPSFPGSIPTGVTLPPLPT--LPSFPMTFPSIPFLTPPPAATSSP 113

BLAST of Carg12627 vs. ExPASy TrEMBL
Match: A0A5A7TLS8 (Proline-rich receptor-like protein kinase PERK2 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00030 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 6.6e-26
Identity = 87/133 (65.41%), Postives = 97/133 (72.93%), Query Frame = 0

Query: 1   MASSNY-LIIAFMATLVFSAIDTGRAARHLLQIASPSVPGLPSLPP---LPPLPNPTTGS 60
           MAS  Y +I+ FMATLVFSAIDT RAAR LLQ A P++PGLPSLP    LPPLP    G 
Sbjct: 1   MASPKYFIILTFMATLVFSAIDTSRAARCLLQTAPPNMPGLPSLPKPIGLPPLPPLPMGP 60

Query: 61  GIPSIPSLPQPTLPTTQPSLPKLPPFPTFPSNIP-TGMALPPLPTTL--LPNL----PSI 120
           G+ SIP+ PQPT PT QPSLPKLPP P+ P NIP TG  LPPLPT+L  LP++    PSI
Sbjct: 61  GMSSIPNFPQPTFPTIQPSLPKLPPLPSLPLNIPTTGAVLPPLPTSLPTLPSIPTTFPSI 120

Query: 121 PSLTPPPTTSSSP 123
           P LTPPP T SSP
Sbjct: 121 PFLTPPPATHSSP 133

BLAST of Carg12627 vs. ExPASy TrEMBL
Match: A0A0A0KWI7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G182290 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.5e-25
Identity = 79/123 (64.23%), Postives = 92/123 (74.80%), Query Frame = 0

Query: 6   YLIIAFMATLVFSAIDTGRAARHLLQIASPSVPGLPSLPPL---PPLPNPTTGSGIPSIP 65
           ++ + FMATLVFSAID+ RAAR LLQ A P++PGLPSLP L   PPLP    G G+PSIP
Sbjct: 7   FMTLTFMATLVFSAIDSSRAARRLLQTAPPNMPGLPSLPKLMGMPPLPPLPMGPGMPSIP 66

Query: 66  SLPQPTLPTTQPSLPKLPPFPTFPSNIP-TGMALPPLPT--TLLPNLPSIPSLTPPPTTS 123
           +LPQPT PT QPSLPKLPP P+ P NIP TG+  PPLPT  ++    PSIP LTPPP T+
Sbjct: 67  NLPQPTFPTIQPSLPKLPPLPSLPVNIPATGVVFPPLPTLPSIPTTFPSIPFLTPPPATT 126

BLAST of Carg12627 vs. ExPASy TrEMBL
Match: A0A5D3E045 (Proline-rich receptor-like protein kinase PERK2 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00030 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.6e-24
Identity = 86/134 (64.18%), Postives = 93/134 (69.40%), Query Frame = 0

Query: 1   MASSNY-LIIAFMATLVFSAIDTGRAARHLLQIASPSVPGLPSLPP---LPPLPNPTTGS 60
           MAS  Y +I+ FMATLVFSAIDT RAAR LLQ A P++PGLPSLP    LPPLP    G 
Sbjct: 1   MASPKYFMILTFMATLVFSAIDTSRAARCLLQTAPPNMPGLPSLPKPIGLPPLPPLPMGP 60

Query: 61  GIPSIPSLPQPTLPTTQPSLPKLPPFPTFPSNIP-TGMALPPLPTTLLPNLPSIPS---- 120
           G  SIP+ PQPT PT QPSLPKLPP P+ P NIP TG  LPPL T  LP LPSIP+    
Sbjct: 61  GTSSIPNFPQPTFPTIQPSLPKLPPLPSLPLNIPTTGAVLPPL-TNSLPTLPSIPTTFPS 120

Query: 121 ---LTPPPTTSSSP 123
              LTPPP T SSP
Sbjct: 121 IPFLTPPPATHSSP 133

BLAST of Carg12627 vs. TAIR 10
Match: AT5G15780.1 (Pollen Ole e 1 allergen and extensin family protein )

HSP 1 Score: 44.3 bits (103), Expect = 8.3e-05
Identity = 38/93 (40.86%), Postives = 51/93 (54.84%), Query Frame = 0

Query: 34  SPSVPGLPSLPPLPPLPNPTTGSGIPSIPSLPQPTLPTTQPSLPKLPPFPTFPS-NIPTG 93
           +P +P  PSLPP+P +P P T   IP +P+ P PTLP   P++P LPP P  P   I   
Sbjct: 289 NPLIPSPPSLPPIPLIPTPPTLPTIPLLPTPPTPTLPPI-PTIPTLPPLPVLPPVPIVNP 348

Query: 94  MALPPLPTTL---LPNLPSIPSLTPPPTTSSSP 123
            +LPP P +    LP +P +P + P P     P
Sbjct: 349 PSLPPPPPSFPVPLPPVPGLPGIPPVPLIPGIP 380

BLAST of Carg12627 vs. TAIR 10
Match: AT2G22510.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 43.1 bits (100), Expect = 1.8e-04
Identity = 48/126 (38.10%), Postives = 67/126 (53.17%), Query Frame = 0

Query: 7   LIIAFMATLVFSAIDTGRAARHLLQIASPSV--------PGLP--SLPPLPP---LPNPT 66
           L+IA   T  F+ +    A+RHLLQ ++P++        P LP  ++PP PP   LP PT
Sbjct: 8   LVIALTFTSFFTGLS---ASRHLLQ-STPAITPPVTTTFPPLPTTTMPPFPPSTSLPQPT 67

Query: 67  TGSGIPS--IPSLPQPTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLPNLPSIPS 118
               +PS  IPSLP P  P   P+ P++   P FP +IP        P  L  ++P+IP 
Sbjct: 68  AFPPLPSSQIPSLPNPAQPINIPNFPQI-NIPNFPISIPNN-----FPFNLPTSIPTIPF 123

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7027509.12.4e-54100.00hypothetical protein SDJN02_11523, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6595525.11.0e-5298.36hypothetical protein SDJN03_12078, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023518060.12.3e-4992.80proline-rich receptor-like protein kinase PERK2 [Cucurbita pepo subsp. pepo][more]
XP_023518061.11.7e-4485.94protein PELPK1-like [Cucurbita pepo subsp. pepo][more]
KAG6595524.12.0e-4083.20hypothetical protein SDJN03_12077, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1J7821.3e-3474.19uncharacterized protein LOC111483197 OS=Cucurbita maxima OX=3661 GN=LOC111483197... [more]
A0A6J1E9485.2e-3173.73uncharacterized protein LOC111430528 OS=Cucurbita moschata OX=3662 GN=LOC1114305... [more]
A0A5A7TLS86.6e-2665.41Proline-rich receptor-like protein kinase PERK2 isoform X2 OS=Cucumis melo var. ... [more]
A0A0A0KWI71.5e-2564.23Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G182290 PE=4 SV=1[more]
A0A5D3E0451.6e-2464.18Proline-rich receptor-like protein kinase PERK2 isoform X2 OS=Cucumis melo var. ... [more]
Match NameE-valueIdentityDescription
AT5G15780.18.3e-0540.86Pollen Ole e 1 allergen and extensin family protein [more]
AT2G22510.11.8e-0438.10hydroxyproline-rich glycoprotein family protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 100..122
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..122
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..55
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..93
NoneNo IPR availablePANTHERPTHR33088:SF30LEGUMINOSIN GROUP485 SECRETED PEPTIDEcoord: 1..120
IPR044659Protein PELPK-likePANTHERPTHR33088MUCIN-2coord: 1..120

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg12627-RACarg12627-RAmRNA