Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCTTCCAACTACTTGATCATCGCTTTCATGGCTACTTTAGTGTTTTCGGCCATCGACACTGGCCGAGCAGCTCGTCATCTCCTGCAAATCGCTTCGCCGAGCGTGCCAGGGTTGCCCTCATTGCCTCCTCTCCCGCCGTTGCCAAACCCGACAACAGGGTCAGGAATCCCTTCTATCCCAAGCCTCCCACAACCAACGTTGCCAACTACTCAACCATCCCTCCCTAAGTTACCACCATTTCCAACCTTCCCTAGCAACATCCCGACTGGAATGGCGCTGCCTCCGCTCCCGACAACTTTGCTTCCGAACCTACCCTCGATCCCTTCCCTCACTCCCCCACCGACCACCTCCTCTTCACCTTAA
mRNA sequence
ATGGCCTCTTCCAACTACTTGATCATCGCTTTCATGGCTACTTTAGTGTTTTCGGCCATCGACACTGGCCGAGCAGCTCGTCATCTCCTGCAAATCGCTTCGCCGAGCGTGCCAGGGTTGCCCTCATTGCCTCCTCTCCCGCCGTTGCCAAACCCGACAACAGGGTCAGGAATCCCTTCTATCCCAAGCCTCCCACAACCAACGTTGCCAACTACTCAACCATCCCTCCCTAAGTTACCACCATTTCCAACCTTCCCTAGCAACATCCCGACTGGAATGGCGCTGCCTCCGCTCCCGACAACTTTGCTTCCGAACCTACCCTCGATCCCTTCCCTCACTCCCCCACCGACCACCTCCTCTTCACCTTAA
Coding sequence (CDS)
ATGGCCTCTTCCAACTACTTGATCATCGCTTTCATGGCTACTTTAGTGTTTTCGGCCATCGACACTGGCCGAGCAGCTCGTCATCTCCTGCAAATCGCTTCGCCGAGCGTGCCAGGGTTGCCCTCATTGCCTCCTCTCCCGCCGTTGCCAAACCCGACAACAGGGTCAGGAATCCCTTCTATCCCAAGCCTCCCACAACCAACGTTGCCAACTACTCAACCATCCCTCCCTAAGTTACCACCATTTCCAACCTTCCCTAGCAACATCCCGACTGGAATGGCGCTGCCTCCGCTCCCGACAACTTTGCTTCCGAACCTACCCTCGATCCCTTCCCTCACTCCCCCACCGACCACCTCCTCTTCACCTTAA
Protein sequence
MASSNYLIIAFMATLVFSAIDTGRAARHLLQIASPSVPGLPSLPPLPPLPNPTTGSGIPSIPSLPQPTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLPNLPSIPSLTPPPTTSSSP
Homology
BLAST of Carg12627 vs. NCBI nr
Match:
KAG7027509.1 (hypothetical protein SDJN02_11523, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 222.2 bits (565), Expect = 2.4e-54
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0
Query: 1 MASSNYLIIAFMATLVFSAIDTGRAARHLLQIASPSVPGLPSLPPLPPLPNPTTGSGIPS 60
MASSNYLIIAFMATLVFSAIDTGRAARHLLQIASPSVPGLPSLPPLPPLPNPTTGSGIPS
Sbjct: 1 MASSNYLIIAFMATLVFSAIDTGRAARHLLQIASPSVPGLPSLPPLPPLPNPTTGSGIPS 60
Query: 61 IPSLPQPTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLPNLPSIPSLTPPPTTSS 120
IPSLPQPTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLPNLPSIPSLTPPPTTSS
Sbjct: 61 IPSLPQPTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLPNLPSIPSLTPPPTTSS 120
Query: 121 SP 123
SP
Sbjct: 121 SP 122
BLAST of Carg12627 vs. NCBI nr
Match:
KAG6595525.1 (hypothetical protein SDJN03_12078, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 216.9 bits (551), Expect = 1.0e-52
Identity = 120/122 (98.36%), Postives = 120/122 (98.36%), Query Frame = 0
Query: 1 MASSNYLIIAFMATLVFSAIDTGRAARHLLQIASPSVPGLPSLPPLPPLPNPTTGSGIPS 60
MASSNYLIIAFMATLVFSAIDTGRAARHLLQIASPSVPGLPSLPPLP LPNPT GSGIPS
Sbjct: 1 MASSNYLIIAFMATLVFSAIDTGRAARHLLQIASPSVPGLPSLPPLPSLPNPTIGSGIPS 60
Query: 61 IPSLPQPTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLPNLPSIPSLTPPPTTSS 120
IPSLPQPTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLPNLPSIPSLTPPPTTSS
Sbjct: 61 IPSLPQPTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLPNLPSIPSLTPPPTTSS 120
Query: 121 SP 123
SP
Sbjct: 121 SP 122
BLAST of Carg12627 vs. NCBI nr
Match:
XP_023518060.1 (proline-rich receptor-like protein kinase PERK2 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 205.7 bits (522), Expect = 2.3e-49
Identity = 116/125 (92.80%), Postives = 118/125 (94.40%), Query Frame = 0
Query: 1 MASSNYLIIAFMATLVFSAIDTGRAARHLLQIASPSVPGLPSLPPLPPL---PNPTTGSG 60
MAS YLIIAF+ATLVFSAIDTGRAARHLLQ A P+VPGLPSLPPLPPL PNPTTGSG
Sbjct: 1 MASFKYLIIAFVATLVFSAIDTGRAARHLLQTAPPNVPGLPSLPPLPPLPTMPNPTTGSG 60
Query: 61 IPSIPSLPQPTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLPNLPSIPSLTPPPT 120
IPSIPSLPQPTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLPNLPSIPSLTPPPT
Sbjct: 61 IPSIPSLPQPTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLPNLPSIPSLTPPPT 120
Query: 121 TSSSP 123
TSSSP
Sbjct: 121 TSSSP 125
BLAST of Carg12627 vs. NCBI nr
Match:
XP_023518061.1 (protein PELPK1-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 189.5 bits (480), Expect = 1.7e-44
Identity = 110/128 (85.94%), Postives = 114/128 (89.06%), Query Frame = 0
Query: 1 MASSNYLIIAFMATLVFSAIDTGRAARHLLQIASPSVPGLPSLPPLPPL---PNPTTGSG 60
MASS YLIIAFM TL+FSAIDTGRAARHLLQ A P+VP LPSLPPLPPL PNPTTG G
Sbjct: 1 MASSKYLIIAFMVTLMFSAIDTGRAARHLLQTAPPNVPRLPSLPPLPPLPTMPNPTTGPG 60
Query: 61 IPSIPSLPQ---PTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLPNLPSIPSLTP 120
IPSIPSLPQ PTLPTTQPSLPKLPP P+FP NIPTGMALPPLPTTLLPNLPSIPSLTP
Sbjct: 61 IPSIPSLPQPTLPTLPTTQPSLPKLPPLPSFPRNIPTGMALPPLPTTLLPNLPSIPSLTP 120
Query: 121 PPTTSSSP 123
PPTT+SSP
Sbjct: 121 PPTTTSSP 128
BLAST of Carg12627 vs. NCBI nr
Match:
KAG6595524.1 (hypothetical protein SDJN03_12077, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 176.0 bits (445), Expect = 2.0e-40
Identity = 104/125 (83.20%), Postives = 110/125 (88.00%), Query Frame = 0
Query: 1 MASSNYLIIAFMATLVFSAIDTGRAARHLLQIASPSVPGLPSLPPLPPL---PNPTTGSG 60
MASS YLIIAFMATL+FSAI+TGRAARHLLQ A P+VPGLPSLPPLPPL PNPTTG G
Sbjct: 1 MASSKYLIIAFMATLMFSAINTGRAARHLLQTAPPNVPGLPSLPPLPPLPTMPNPTTGPG 60
Query: 61 IPSIPSLPQPTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLPNLPSIPSLTPPPT 120
IPSIPSLPQPTLPTTQPSLPKL P +PTGMALPPLPTTLLPNLPSIPSLTPPP+
Sbjct: 61 IPSIPSLPQPTLPTTQPSLPKLSP-------LPTGMALPPLPTTLLPNLPSIPSLTPPPS 118
Query: 121 TSSSP 123
T+SSP
Sbjct: 121 TTSSP 118
BLAST of Carg12627 vs. ExPASy TrEMBL
Match:
A0A6J1J782 (uncharacterized protein LOC111483197 OS=Cucurbita maxima OX=3661 GN=LOC111483197 PE=4 SV=1)
HSP 1 Score: 155.6 bits (392), Expect = 1.3e-34
Identity = 92/124 (74.19%), Postives = 100/124 (80.65%), Query Frame = 0
Query: 1 MASSNYLIIAFMATLVFSAIDTGRAARHLLQIASPSVPGLPSLPPLPPLPNPTTGSGIPS 60
MASSNY I+AFMATLVFSAIDTGRAAR LLQ A PSVPGLPSLPPLPP P T G+PS
Sbjct: 1 MASSNYFIMAFMATLVFSAIDTGRAARRLLQTAQPSVPGLPSLPPLPPFP---TVPGMPS 60
Query: 61 IPSLPQPTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPT--TLLPNLPSIPSLTPPPTT 120
IP+LPQPTLPTTQPSLPK+PP P+FP IPTG+ LPPLPT + PSIP LTPPP
Sbjct: 61 IPNLPQPTLPTTQPSLPKMPPLPSFPGGIPTGVTLPPLPTLPSFPTTFPSIPFLTPPPAA 120
Query: 121 SSSP 123
+SSP
Sbjct: 121 TSSP 121
BLAST of Carg12627 vs. ExPASy TrEMBL
Match:
A0A6J1E948 (uncharacterized protein LOC111430528 OS=Cucurbita moschata OX=3662 GN=LOC111430528 PE=4 SV=1)
HSP 1 Score: 143.7 bits (361), Expect = 5.2e-31
Identity = 87/118 (73.73%), Postives = 96/118 (81.36%), Query Frame = 0
Query: 9 IAFMATLVFSAIDTGRAARHLLQIASPSVPGLPSLPPLPPLPNPTTGSGIPSIPSLPQPT 68
+AFMATLVFSAIDTGRAAR LLQ A PSVPGLPSLPPLPP P T G+PSIP+LPQPT
Sbjct: 1 MAFMATLVFSAIDTGRAARRLLQTAQPSVPGLPSLPPLPPFP---TVPGMPSIPNLPQPT 60
Query: 69 LPTTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLPN----LPSIPSLTPPPTTSSSP 123
LPTTQPSLPK+PP P+FP +IPTG+ LPPLPT LP+ PSIP LTPPP +SSP
Sbjct: 61 LPTTQPSLPKMPPLPSFPGSIPTGVTLPPLPT--LPSFPMTFPSIPFLTPPPAATSSP 113
BLAST of Carg12627 vs. ExPASy TrEMBL
Match:
A0A5A7TLS8 (Proline-rich receptor-like protein kinase PERK2 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00030 PE=4 SV=1)
HSP 1 Score: 126.7 bits (317), Expect = 6.6e-26
Identity = 87/133 (65.41%), Postives = 97/133 (72.93%), Query Frame = 0
Query: 1 MASSNY-LIIAFMATLVFSAIDTGRAARHLLQIASPSVPGLPSLPP---LPPLPNPTTGS 60
MAS Y +I+ FMATLVFSAIDT RAAR LLQ A P++PGLPSLP LPPLP G
Sbjct: 1 MASPKYFIILTFMATLVFSAIDTSRAARCLLQTAPPNMPGLPSLPKPIGLPPLPPLPMGP 60
Query: 61 GIPSIPSLPQPTLPTTQPSLPKLPPFPTFPSNIP-TGMALPPLPTTL--LPNL----PSI 120
G+ SIP+ PQPT PT QPSLPKLPP P+ P NIP TG LPPLPT+L LP++ PSI
Sbjct: 61 GMSSIPNFPQPTFPTIQPSLPKLPPLPSLPLNIPTTGAVLPPLPTSLPTLPSIPTTFPSI 120
Query: 121 PSLTPPPTTSSSP 123
P LTPPP T SSP
Sbjct: 121 PFLTPPPATHSSP 133
BLAST of Carg12627 vs. ExPASy TrEMBL
Match:
A0A0A0KWI7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G182290 PE=4 SV=1)
HSP 1 Score: 125.6 bits (314), Expect = 1.5e-25
Identity = 79/123 (64.23%), Postives = 92/123 (74.80%), Query Frame = 0
Query: 6 YLIIAFMATLVFSAIDTGRAARHLLQIASPSVPGLPSLPPL---PPLPNPTTGSGIPSIP 65
++ + FMATLVFSAID+ RAAR LLQ A P++PGLPSLP L PPLP G G+PSIP
Sbjct: 7 FMTLTFMATLVFSAIDSSRAARRLLQTAPPNMPGLPSLPKLMGMPPLPPLPMGPGMPSIP 66
Query: 66 SLPQPTLPTTQPSLPKLPPFPTFPSNIP-TGMALPPLPT--TLLPNLPSIPSLTPPPTTS 123
+LPQPT PT QPSLPKLPP P+ P NIP TG+ PPLPT ++ PSIP LTPPP T+
Sbjct: 67 NLPQPTFPTIQPSLPKLPPLPSLPVNIPATGVVFPPLPTLPSIPTTFPSIPFLTPPPATT 126
BLAST of Carg12627 vs. ExPASy TrEMBL
Match:
A0A5D3E045 (Proline-rich receptor-like protein kinase PERK2 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00030 PE=4 SV=1)
HSP 1 Score: 122.1 bits (305), Expect = 1.6e-24
Identity = 86/134 (64.18%), Postives = 93/134 (69.40%), Query Frame = 0
Query: 1 MASSNY-LIIAFMATLVFSAIDTGRAARHLLQIASPSVPGLPSLPP---LPPLPNPTTGS 60
MAS Y +I+ FMATLVFSAIDT RAAR LLQ A P++PGLPSLP LPPLP G
Sbjct: 1 MASPKYFMILTFMATLVFSAIDTSRAARCLLQTAPPNMPGLPSLPKPIGLPPLPPLPMGP 60
Query: 61 GIPSIPSLPQPTLPTTQPSLPKLPPFPTFPSNIP-TGMALPPLPTTLLPNLPSIPS---- 120
G SIP+ PQPT PT QPSLPKLPP P+ P NIP TG LPPL T LP LPSIP+
Sbjct: 61 GTSSIPNFPQPTFPTIQPSLPKLPPLPSLPLNIPTTGAVLPPL-TNSLPTLPSIPTTFPS 120
Query: 121 ---LTPPPTTSSSP 123
LTPPP T SSP
Sbjct: 121 IPFLTPPPATHSSP 133
BLAST of Carg12627 vs. TAIR 10
Match:
AT5G15780.1 (Pollen Ole e 1 allergen and extensin family protein )
HSP 1 Score: 44.3 bits (103), Expect = 8.3e-05
Identity = 38/93 (40.86%), Postives = 51/93 (54.84%), Query Frame = 0
Query: 34 SPSVPGLPSLPPLPPLPNPTTGSGIPSIPSLPQPTLPTTQPSLPKLPPFPTFPS-NIPTG 93
+P +P PSLPP+P +P P T IP +P+ P PTLP P++P LPP P P I
Sbjct: 289 NPLIPSPPSLPPIPLIPTPPTLPTIPLLPTPPTPTLPPI-PTIPTLPPLPVLPPVPIVNP 348
Query: 94 MALPPLPTTL---LPNLPSIPSLTPPPTTSSSP 123
+LPP P + LP +P +P + P P P
Sbjct: 349 PSLPPPPPSFPVPLPPVPGLPGIPPVPLIPGIP 380
BLAST of Carg12627 vs. TAIR 10
Match:
AT2G22510.1 (hydroxyproline-rich glycoprotein family protein )
HSP 1 Score: 43.1 bits (100), Expect = 1.8e-04
Identity = 48/126 (38.10%), Postives = 67/126 (53.17%), Query Frame = 0
Query: 7 LIIAFMATLVFSAIDTGRAARHLLQIASPSV--------PGLP--SLPPLPP---LPNPT 66
L+IA T F+ + A+RHLLQ ++P++ P LP ++PP PP LP PT
Sbjct: 8 LVIALTFTSFFTGLS---ASRHLLQ-STPAITPPVTTTFPPLPTTTMPPFPPSTSLPQPT 67
Query: 67 TGSGIPS--IPSLPQPTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLPNLPSIPS 118
+PS IPSLP P P P+ P++ P FP +IP P L ++P+IP
Sbjct: 68 AFPPLPSSQIPSLPNPAQPINIPNFPQI-NIPNFPISIPNN-----FPFNLPTSIPTIPF 123
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG7027509.1 | 2.4e-54 | 100.00 | hypothetical protein SDJN02_11523, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
KAG6595525.1 | 1.0e-52 | 98.36 | hypothetical protein SDJN03_12078, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_023518060.1 | 2.3e-49 | 92.80 | proline-rich receptor-like protein kinase PERK2 [Cucurbita pepo subsp. pepo] | [more] |
XP_023518061.1 | 1.7e-44 | 85.94 | protein PELPK1-like [Cucurbita pepo subsp. pepo] | [more] |
KAG6595524.1 | 2.0e-40 | 83.20 | hypothetical protein SDJN03_12077, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1J782 | 1.3e-34 | 74.19 | uncharacterized protein LOC111483197 OS=Cucurbita maxima OX=3661 GN=LOC111483197... | [more] |
A0A6J1E948 | 5.2e-31 | 73.73 | uncharacterized protein LOC111430528 OS=Cucurbita moschata OX=3662 GN=LOC1114305... | [more] |
A0A5A7TLS8 | 6.6e-26 | 65.41 | Proline-rich receptor-like protein kinase PERK2 isoform X2 OS=Cucumis melo var. ... | [more] |
A0A0A0KWI7 | 1.5e-25 | 64.23 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G182290 PE=4 SV=1 | [more] |
A0A5D3E045 | 1.6e-24 | 64.18 | Proline-rich receptor-like protein kinase PERK2 isoform X2 OS=Cucumis melo var. ... | [more] |
Match Name | E-value | Identity | Description | |
AT5G15780.1 | 8.3e-05 | 40.86 | Pollen Ole e 1 allergen and extensin family protein | [more] |
AT2G22510.1 | 1.8e-04 | 38.10 | hydroxyproline-rich glycoprotein family protein | [more] |