Carg12626 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg12626
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr07: 6955401 .. 6955643 (+)
RNA-Seq Expression	Carg12626
Synteny	Carg12626

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCTTCCAAGTACTTGATCATAGCTTTCATGGCTACTTTGATGTTTTCAGCCATTCAATACTGGTCGAGCTGCTCGTCATCTCTTGCAAACTGCTCCACCGAACGTGCCAAGGTTGCCCTCATTGCCTCCTCTCCCGCCGTTGCCAACGATGCCAAACCCGACAACAGGGCCAGGAATCCCTTCTATCCCAAGCCTCCCACAACCAACATTGCCAACTACTCAACCATCCCTCCCTAA

mRNA sequence

ATGGCCTCTTCCAAGTACTTGATCATAGCTTTCATGGCTACTTTGATGTTTTCAGCCATTCAATACTGGTCGAGCTGCTCGTCATCTCTTGCAAACTGCTCCACCGAACGTGCCAAGGTTGCCCTCATTGCCTCCTCTCCCGCCGTTGCCAACGATGCCAAACCCGACAACAGGGCCAGGAATCCCTTCTATCCCAAGCCTCCCACAACCAACATTGCCAACTACTCAACCATCCCTCCCTAA

Coding sequence (CDS)

ATGGCCTCTTCCAAGTACTTGATCATAGCTTTCATGGCTACTTTGATGTTTTCAGCCATTCAATACTGGTCGAGCTGCTCGTCATCTCTTGCAAACTGCTCCACCGAACGTGCCAAGGTTGCCCTCATTGCCTCCTCTCCCGCCGTTGCCAACGATGCCAAACCCGACAACAGGGCCAGGAATCCCTTCTATCCCAAGCCTCCCACAACCAACATTGCCAACTACTCAACCATCCCTCCCTAA

Protein sequence

MASSKYLIIAFMATLMFSAIQYWSSCSSSLANCSTERAKVALIASSPAVANDAKPDNRARNPFYPKPPTTNIANYSTIPP

Homology

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BLAST of Carg12626 vs. NCBI nr
Match: KAG7027508.1 (hypothetical protein SDJN02_11522, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 153.7 bits (387), Expect = 6.8e-34
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MASSKYLIIAFMATLMFSAIQYWSSCSSSLANCSTERAKVALIASSPAVANDAKPDNRAR 60
          MASSKYLIIAFMATLMFSAIQYWSSCSSSLANCSTERAKVALIASSPAVANDAKPDNRAR
Sbjct: 1  MASSKYLIIAFMATLMFSAIQYWSSCSSSLANCSTERAKVALIASSPAVANDAKPDNRAR 60

Query: 61 NPFYPKPPTTNIANYSTIPP 81
          NPFYPKPPTTNIANYSTIPP
Sbjct: 61 NPFYPKPPTTNIANYSTIPP 80

The following BLAST results are available for this feature:

BLAST of Carg12626 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7027508.1	6.8e-34	100.00	hypothetical protein SDJN02_11522, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg12626 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg12626 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg12626 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12626-RA	Carg12626-RA	mRNA