Carg12570 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg12570
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Histone H2B
Location	Carg_Chr14: 663049 .. 664181 (-)
RNA-Seq Expression	Carg12570
Synteny	Carg12570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCTTTGAGATATGGAGACGCAGTCCAATAGGAAATGGGCTTTCAGATAAGAGGCTCAGTCCAATAGGAAATGGGCTTCGAGATAAGCGGGCCCAGTCCAATATGAAATGGGCTTTCAGATATGTAGACGCTGTCCAACAGGAAATGGGCTTTAAGAGAAGGAGGCCCAGCCCAATAGGAAAGCACTGGAAATATCTGAAAACAAATAAATCAGCGAATTGTCAAAGGAAGAAAACGTGTAGAGCTTTGATTCGGCCTCGCAGCTATATCTATGAGACCGATTCATTTCTCTTGACCCAAAGGATTAGTTCCGTAAGATCCCAATTCCGCCACTATTTTCGACCTCATCCTCCCAAAATTATCCGATCCGCTTCCGCTGCCGCTGCAACGCCGCTGATCTTTTGCAGCATGTTACGGATCAGATGATTCCCAGTTCTTCCTTTTACTGACCGATTTCAGGTTCTCATGTTCTGAACCTTTGTGTTCTATTCGTACTTTCGATTCGCACATTTTCCATTTTTTTGAAAAGTTTTCTTCGAGTTCTTGGCTCGCAAATCTGAGGTTTTGTTAGACCCTACGGAAAATTAGGGTTTCGAAGAGCATTTCAGTATGCCTTCGGTACCAATTGATCTCTTCCTGCACCCTCTGCTTCCTTCTTTGACTTCTTTTCATGGTGGTTCATCGTCGCATCGTCTTAAGCGGCTTGAAAAGGGTGATCGGCGTGGTAATCTTAGTTAACATGGGGTTCTTTTAGCGCTTTTCGTGCTCTATTCGTATTCTTCAGCCTTCTCTTCTCCTCCTTGCTCTTGGTTCGTTCGAGATTTGGAATTCCTAGAGAAATTAGAGTTGTAAGGTAAGGATTTATTTGTTTTGATCTTGAGGTCTTTTAGCGGTCGAAGCCTCTGAGAAGCGAGTCACTGGCAATTGGCTACTCGTTGAGAGGGGTTTTACAATCCTACTATTGTGCGAGGTATTGTGCTATAATCTTTTTATATTCTTACTAAGAATTTTACAGGCATAATAGCTTCATGTTTCTTTCTGAGCACCTGGATCGAGTTTCTTTTCGGGATTGTTTTACTATATCTTGGATATATGTGCAGGTTCTAGCAGGTTTCTTGTGTCTTATATAA

mRNA sequence

ATGGGCTTTGAGATATGGAGACGCAGTCCAATAGGAAATGGGCTTTCAGATAAGAGGCTCAGTCCAATAGGAAATGGGCTTCGAGATAAGCGGGCCCAGTCCAATATGAAATGGGCTTTCAGATATGTAGACGCTGTCCAACAGGAAATGGGCTTTAAGAGAAGGAGGCCCAGCCCAATAGGAAAGCACTGGAAATATCTGAAAACAAATAAATCAGCGAATTGTCAAAGGAAGAAAACGTGTAGAGCTTTGATTCGGCCTCGCAGCTATATCTATGAGACCGATTCATTTCTCTTGACCCAAAGGATTAGTTCCGTAAGATCCCAATTCCGCCACTATTTTCGACCTCATCCTCCCAAAATTATCCGATCCGCTTCCGCTGCCGCTGCAACGCCGCTGATCTTTTGCAGCATTATGCCTTCGGTACCAATTGATCTCTTCCTGCACCCTCTGCTTCCTTCTTTGACTTCTTTTCATGGTGGTTCATCGTCGCATCGTCTTAAGCGGCTTGAAAAGGGTGATCGGCGTGCGGTCGAAGCCTCTGAGAAGCGAGTCACTGGCAATTGGCTACTCGTTGAGAGGGGTTTTACAATCCTACTATTGTGCGAGGTTCTAGCAGGTTTCTTGTGTCTTATATAA

Coding sequence (CDS)

ATGGGCTTTGAGATATGGAGACGCAGTCCAATAGGAAATGGGCTTTCAGATAAGAGGCTCAGTCCAATAGGAAATGGGCTTCGAGATAAGCGGGCCCAGTCCAATATGAAATGGGCTTTCAGATATGTAGACGCTGTCCAACAGGAAATGGGCTTTAAGAGAAGGAGGCCCAGCCCAATAGGAAAGCACTGGAAATATCTGAAAACAAATAAATCAGCGAATTGTCAAAGGAAGAAAACGTGTAGAGCTTTGATTCGGCCTCGCAGCTATATCTATGAGACCGATTCATTTCTCTTGACCCAAAGGATTAGTTCCGTAAGATCCCAATTCCGCCACTATTTTCGACCTCATCCTCCCAAAATTATCCGATCCGCTTCCGCTGCCGCTGCAACGCCGCTGATCTTTTGCAGCATTATGCCTTCGGTACCAATTGATCTCTTCCTGCACCCTCTGCTTCCTTCTTTGACTTCTTTTCATGGTGGTTCATCGTCGCATCGTCTTAAGCGGCTTGAAAAGGGTGATCGGCGTGCGGTCGAAGCCTCTGAGAAGCGAGTCACTGGCAATTGGCTACTCGTTGAGAGGGGTTTTACAATCCTACTATTGTGCGAGGTTCTAGCAGGTTTCTTGTGTCTTATATAA

Protein sequence

MGFEIWRRSPIGNGLSDKRLSPIGNGLRDKRAQSNMKWAFRYVDAVQQEMGFKRRRPSPIGKHWKYLKTNKSANCQRKKTCRALIRPRSYIYETDSFLLTQRISSVRSQFRHYFRPHPPKIIRSASAAAATPLIFCSIMPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKGDRRAVEASEKRVTGNWLLVERGFTILLLCEVLAGFLCLI

Homology

[Close]

BLAST of Carg12570 vs. NCBI nr
Match: KAG7017317.1 (hypothetical protein SDJN02_19180, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 429.9 bits (1104), Expect = 1.3e-116
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 0


Query: 1   MGFEIWRRSPIGNGLSDKRLSPIGNGLRDKRAQSNMKWAFRYVDAVQQEMGFKRRRPSPI 60
           MGFEIWRRSPIGNGLSDKRLSPIGNGLRDKRAQSNMKWAFRYVDAVQQEMGFKRRRPSPI
Sbjct: 1   MGFEIWRRSPIGNGLSDKRLSPIGNGLRDKRAQSNMKWAFRYVDAVQQEMGFKRRRPSPI 60

Query: 61  GKHWKYLKTNKSANCQRKKTCRALIRPRSYIYETDSFLLTQRISSVRSQFRHYFRPHPPK 120
           GKHWKYLKTNKSANCQRKKTCRALIRPRSYIYETDSFLLTQRISSVRSQFRHYFRPHPPK
Sbjct: 61  GKHWKYLKTNKSANCQRKKTCRALIRPRSYIYETDSFLLTQRISSVRSQFRHYFRPHPPK 120

Query: 121 IIRSASAAAATPLIFCSIMPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKGDRRAVEA 180
           IIRSASAAAATPLIFCSIMPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKGDRRAVEA
Sbjct: 121 IIRSASAAAATPLIFCSIMPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKGDRRAVEA 180

Query: 181 SEKRVTGNWLLVERGFTILLLCEVLAGFLCLI 213
           SEKRVTGNWLLVERGFTILLLCEVLAGFLCLI
Sbjct: 181 SEKRVTGNWLLVERGFTILLLCEVLAGFLCLI 212

[Close]

BLAST of Carg12570 vs. NCBI nr
Match: KAG6580563.1 (hypothetical protein SDJN03_20565, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 259.6 bits (662), Expect = 2.3e-65
Identity = 125/128 (97.66%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 12  GNGLSDKRLSPIGNGLRDKRAQSNMKWAFRYVDAVQQEMGFKRRRPSPIGKHWKYLKTNK 71
           GNGLSDKRLSPIGNGLRDKRAQSNMKWAFRYVDAVQQEMGFKRRRPSPIGKHWKYLKTNK
Sbjct: 7   GNGLSDKRLSPIGNGLRDKRAQSNMKWAFRYVDAVQQEMGFKRRRPSPIGKHWKYLKTNK 66

Query: 72  SANCQRKKTCRALIRPRSYIYETDSFLLTQRISSVRSQFRHYFRPHPPKIIRSASAAAAT 131
           SANCQRKKTCRALIRPRSYIYETDSFLLTQRISSVRSQFRHYFRPHPPKIIRSASAAAA 
Sbjct: 67  SANCQRKKTCRALIRPRSYIYETDSFLLTQRISSVRSQFRHYFRPHPPKIIRSASAAAAA 126

Query: 132 PLIFCSIM 140
           PLIFCS++
Sbjct: 127 PLIFCSML 134

[Close]

BLAST of Carg12570 vs. NCBI nr
Match: KAG6580562.1 (hypothetical protein SDJN03_20564, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 136.3 bits (342), Expect = 3.0e-28
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 139 MPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKGDRRAVEASEKRVTGNWLLVERGFTI 198
           MPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKGDRRAVEASEKRVTGNWLLVERGFTI
Sbjct: 1   MPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKGDRRAVEASEKRVTGNWLLVERGFTI 60

Query: 199 LLLCEVLA 207
           LLLCEVLA
Sbjct: 61  LLLCEVLA 68

[Close]

BLAST of Carg12570 vs. NCBI nr
Match: KAG6596422.1 (hypothetical protein SDJN03_09602, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 85.9 bits (211), Expect = 4.6e-13
Identity = 49/71 (69.01%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 139 MPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKGDRRAVEASEKRVTGNWLLVERGFTI 198
           MPSVPIDL L  LLPSLTSFHGGSSSHRLKRLEKGDRR   ASE    G WLLV R F I
Sbjct: 1   MPSVPIDLLLGSLLPSLTSFHGGSSSHRLKRLEKGDRR---ASEIEFLGIWLLVRRVFAI 60

Query: 199 LLLCEVLAGFL 210
           L+L +  + F+
Sbjct: 61  LILVQGSSRFV 68

[Close]

BLAST of Carg12570 vs. NCBI nr
Match: KAA0044073.1 (BRI1-KD interacting protein [Cucumis melo var. makuwa] >TYK25064.1 BRI1-KD interacting protein [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 3.1e-09
Identity = 36/44 (81.82%), Postives = 38/44 (86.36%), Query Frame = 0


Query: 139 MPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKGDRRAVEASE 183
           MPS  IDL+L PLLPSLTSFHGGSSSHRLKRLEKGDRR + A E
Sbjct: 1   MPSETIDLYLRPLLPSLTSFHGGSSSHRLKRLEKGDRRGLAAIE 44

[Close]

BLAST of Carg12570 vs. ExPASy TrEMBL
Match: A0A5D3DN94 (BRI1-KD interacting protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001860 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.5e-09
Identity = 36/44 (81.82%), Postives = 38/44 (86.36%), Query Frame = 0


Query: 139 MPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKGDRRAVEASE 183
           MPS  IDL+L PLLPSLTSFHGGSSSHRLKRLEKGDRR + A E
Sbjct: 1   MPSETIDLYLRPLLPSLTSFHGGSSSHRLKRLEKGDRRGLAAIE 44

[Close]

BLAST of Carg12570 vs. ExPASy TrEMBL
Match: A0A1S3B5I5 (uncharacterized protein LOC103486406 OS=Cucumis melo OX=3656 GN=LOC103486406 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-08
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 139 MPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKGDRR 177
           MPS  IDL+L PLLPSLTSFHGGSSSHRLKRLEKGDRR
Sbjct: 1   MPSETIDLYLRPLLPSLTSFHGGSSSHRLKRLEKGDRR 38

[Close]

BLAST of Carg12570 vs. ExPASy TrEMBL
Match: A0A314UVH6 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_07868 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.8e-08
Identity = 32/40 (80.00%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 139 MPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKGDRRAV 179
           MPSVPI L L PL+P+LTSFHGGSSSHRLKR+EK DRRA+
Sbjct: 1   MPSVPIQLLLRPLVPNLTSFHGGSSSHRLKRMEKSDRRAL 40

[Close]

BLAST of Carg12570 vs. ExPASy TrEMBL
Match: A0A314XYQ7 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_28489 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 8.2e-08
Identity = 31/40 (77.50%), Postives = 35/40 (87.50%), Query Frame = 0


Query: 139 MPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKGDRRAV 179
           MPSVPI   L PL+P+LTSFHGGSSSHRLKR+EK DRRA+
Sbjct: 1   MPSVPIQFLLRPLVPNLTSFHGGSSSHRLKRMEKSDRRAL 40

[Close]

BLAST of Carg12570 vs. ExPASy TrEMBL
Match: A0A498IEK4 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_004478 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 7.0e-07
Identity = 31/44 (70.45%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 139 MPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKGDRRAVEASE 183
           MPSVP  L L P +P+LTSFHGGS SHRLKRLEKGDRR  +  E
Sbjct: 1   MPSVPTHLLLRPSVPNLTSFHGGSCSHRLKRLEKGDRRGFKKFE 44

The following BLAST results are available for this feature:

BLAST of Carg12570 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7017317.1	1.3e-116	100.00	hypothetical protein SDJN02_19180, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6580563.1	2.3e-65	97.66	hypothetical protein SDJN03_20565, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6580562.1	3.0e-28	100.00	hypothetical protein SDJN03_20564, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6596422.1	4.6e-13	69.01	hypothetical protein SDJN03_09602, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0044073.1	3.1e-09	81.82	BRI1-KD interacting protein [Cucumis melo var. makuwa] >TYK25064.1 BRI1-KD inter...	[more]

BLAST of Carg12570 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg12570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DN94	1.5e-09	81.82	BRI1-KD interacting protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3B5I5	1.3e-08	89.47	uncharacterized protein LOC103486406 OS=Cucumis melo OX=3656 GN=LOC103486406 PE=...	[more]
A0A314UVH6	2.8e-08	80.00	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_078...	[more]
A0A314XYQ7	8.2e-08	77.50	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_284...	[more]
A0A498IEK4	7.0e-07	70.45	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_004478 PE=4 SV=1	[more]

BLAST of Carg12570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12570-RA	Carg12570-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005694	chromosome
molecular_function	GO:0005488	binding