Carg12539 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg12539
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein FAR-RED ELONGATED HYPOCOTYL 1
Location	Carg_Chr14: 548917 .. 551061 (+)
RNA-Seq Expression	Carg12539
Synteny	Carg12539

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTTTTTCCCTTTTTATGGGAATCGTTTGATGAAAAGATGGCAACAATAGGGACTATCCTGCGCGAGCTGCTCAGGCTTCTGTGACTCCAATTTCTCAGCGTTTTTTTCCTCCTCTCTTTCCAGTGTTGTTGGATTTCATTTCTGGGTTTGTGGGTTTGGATTTGTCTCTGCATCTGATCGATTTTATCGTCTTCGGGATTGAGATGGAGGAGAAGAAACAGAACCCAGCTGAGATCAACAGGTTTATCATCTGGGTTTTTAAGATTCTTGCTTCTAAACCACTTTTATCAGTTTTGGATTATGTTCCTTAAACTGTTCATCGAGTGTTTACTTTCACTTTCCTCTCTTCTTTTTTCCCTTTTCGTTTGATTTAGTGAAGATTTCAAGTAGGTCTGTTCTTTTGTTCGTCTAATTACTGAAATGGTGGATGGGGATCAAGATGGGGTTTAGGTTCTTTTCCATTTCTTAGTGTTTCGAGTATCGTTATTGTTGCTATTATTTACTCGGGAGATGAAGAACAATCTTGATCCGCGCTATACTAATTTAGGGAAGTCTGATTTCTTTTCCTTTTTTGAAGTTTCAATCGATTGATGGGGTCTGCGATTTTGCCTTACTGGTACAGATCAACTTATTACCGATTTTAATTACCTAGAATACACATTGAGAAATTAGACGACTGAAAACGAAATCCTACCAATTCTATGCGTTACCAGCTCCTTTTGGAAACAAATTCATGCTTATAATGTTCTAAGACATTGTTTTCATGTTTTGGTTGCTGGAACTCTTCTGTTAATCCAACTCTGTTGGTATATTTTCACTGAGAGTTTGAAGCATTATCTCTTGTAGTTCCTGTCTTGCATCCAAATTAATGGAGGATTGCAGCATTTTCCCTGTCTCTTATCTGAAGAATTATGTCGTTTTCTAATGTTTTTTTTGCAGCTTCTATGTAATTTCTAAGCTCCAGACCAACCCTTTTGACTTGAACAAGAAAAGAAAGCTACCGGCTGAGCATTTGGGCTTGCCTTCACCAAAACATAAACACTGCAATGAAGGCTTCCCTTCCAAGCTTGCCTTTCTGTATGATGGTTTTCCCGAAACCGAGCACATGAATGTACAATTCATAAAGGGGAGCGCGAATGTACTGCGTTTCGACGACGGGTCGAGTCCCGAATCGGCAAAAGATAGCAATAGCTTCTGCGAAGAGTCTGATTCTGCAACATCTGTATTTCATGGAGCCAAATTTGAACTGAACCAAGCTTGCACATATGACAGTTCTTCCACACAATGTATGAGTTTTGGTGGCGCAAGTTCTGAAAGCACCCATTTCTCAGTTGAAAGCTCCACAGCCATGGAATCGAGCTCGACCGAGCAGGAAGTAGCGTTTGCAAGCGGCGAAAATAGAATCGAAACAGTTCACAAAGTTCAGGAACATCTACTAGAACTGGATAGCCGTGAAGATTATGATTTTGCTGAATATGGACATGATGAAACTGAGCAATGCACAGACCAGGAACTTGAGGATCTTTTCTACTCAAACGGATTGGACCCAAATGCCTATATTCTTTCCTCCGGACGATGGACAGTAAACCACGGTAGTAAACACATCTTCCATAAGAATCTTTATCAGTTGAAGTTCATTGTTTGCCATTTACTAAATCACATTCATTCTCTTAATGCAGAGGCTCAATCAAGTGCTAGAGCCCCAACGATTGATCAAGAATTTGAGCAGTACTTTTCCATGCTGATGCTGTAACTCCGATTGCTCGTCCCGAGTACGAGCGCGACCGACATGTAATGTACTAACGCCATCTAAAGTATCGAGTTTTTATGAATAATGTGGATATCAGTTTCATCCTAACGAATTGTACCGAATGAACATTCCGAAAATCGTATTGATAGCAATGGCGTGTTTAACTCTGTAGTAAGTTTCATTCTTTACACTAAACAAATTGTTGCAGTGGCTGAATCAAACTTTACAGAGACAGGAAAATGAAGAATTCAAAGAGATTATTGAACTTTACAGAAACAGATTCACGTAGAAGCAGAATTTGGGCAAAACACGCGAGAAGGGAAAGAAAAGAAGCTGGAAATTATTAATTTATAAAGACCAAAACTTTTGGTAAACGGAATGTCTCAACACTT

mRNA sequence

ATTTTTTTTCCCTTTTTATGGGAATCGTTTGATGAAAAGATGGCAACAATAGGGACTATCCTGCGCGAGCTGCTCAGGCTTCTGTGACTCCAATTTCTCAGCGTTTTTTTCCTCCTCTCTTTCCAGTGTTGTTGGATTTCATTTCTGGGTTTGTGGGTTTGGATTTGTCTCTGCATCTGATCGATTTTATCGTCTTCGGGATTGAGATGGAGGAGAAGAAACAGAACCCAGCTGAGATCAACAGCTTCTATGTAATTTCTAAGCTCCAGACCAACCCTTTTGACTTGAACAAGAAAAGAAAGCTACCGGCTGAGCATTTGGGCTTGCCTTCACCAAAACATAAACACTGCAATGAAGGCTTCCCTTCCAAGCTTGCCTTTCTGTATGATGGTTTTCCCGAAACCGAGCACATGAATGTACAATTCATAAAGGGGAGCGCGAATGTACTGCGTTTCGACGACGGGTCGAGTCCCGAATCGGCAAAAGATAGCAATAGCTTCTGCGAAGAGTCTGATTCTGCAACATCTGTATTTCATGGAGCCAAATTTGAACTGAACCAAGCTTGCACATATGACAGTTCTTCCACACAATGTATGAGTTTTGGTGGCGCAAGTTCTGAAAGCACCCATTTCTCAGTTGAAAGCTCCACAGCCATGGAATCGAGCTCGACCGAGCAGGAAGTAGCGTTTGCAAGCGGCGAAAATAGAATCGAAACAGTTCACAAAGTTCAGGAACATCTACTAGAACTGGATAGCCGTGAAGATTATGATTTTGCTGAATATGGACATGATGAAACTGAGCAATGCACAGACCAGGAACTTGAGGATCTTTTCTACTCAAACGGATTGGACCCAAATGCCTATATTCTTTCCTCCGGACGATGGACAGTAAACCACGAGGCTCAATCAAGTGCTAGAGCCCCAACGATTGATCAAGAATTTGAGCAGTACTTTTCCATGCTGATGCTGTAACTCCGATTGCTCGTCCCGAGTACGAGCGCGACCGACATGTAATGTACTAACGCCATCTAAAGTATCGAGTTTTTATGAATAATGTGGATATCAGTTTCATCCTAACGAATTGTACCGAATGAACATTCCGAAAATCGTATTGATAGCAATGGCGTGTTTAACTCTGTAGTAAGTTTCATTCTTTACACTAAACAAATTGTTGCAGTGGCTGAATCAAACTTTACAGAGACAGGAAAATGAAGAATTCAAAGAGATTATTGAACTTTACAGAAACAGATTCACGTAGAAGCAGAATTTGGGCAAAACACGCGAGAAGGGAAAGAAAAGAAGCTGGAAATTATTAATTTATAAAGACCAAAACTTTTGGTAAACGGAATGTCTCAACACTT

Coding sequence (CDS)

ATGGAGGAGAAGAAACAGAACCCAGCTGAGATCAACAGCTTCTATGTAATTTCTAAGCTCCAGACCAACCCTTTTGACTTGAACAAGAAAAGAAAGCTACCGGCTGAGCATTTGGGCTTGCCTTCACCAAAACATAAACACTGCAATGAAGGCTTCCCTTCCAAGCTTGCCTTTCTGTATGATGGTTTTCCCGAAACCGAGCACATGAATGTACAATTCATAAAGGGGAGCGCGAATGTACTGCGTTTCGACGACGGGTCGAGTCCCGAATCGGCAAAAGATAGCAATAGCTTCTGCGAAGAGTCTGATTCTGCAACATCTGTATTTCATGGAGCCAAATTTGAACTGAACCAAGCTTGCACATATGACAGTTCTTCCACACAATGTATGAGTTTTGGTGGCGCAAGTTCTGAAAGCACCCATTTCTCAGTTGAAAGCTCCACAGCCATGGAATCGAGCTCGACCGAGCAGGAAGTAGCGTTTGCAAGCGGCGAAAATAGAATCGAAACAGTTCACAAAGTTCAGGAACATCTACTAGAACTGGATAGCCGTGAAGATTATGATTTTGCTGAATATGGACATGATGAAACTGAGCAATGCACAGACCAGGAACTTGAGGATCTTTTCTACTCAAACGGATTGGACCCAAATGCCTATATTCTTTCCTCCGGACGATGGACAGTAAACCACGAGGCTCAATCAAGTGCTAGAGCCCCAACGATTGATCAAGAATTTGAGCAGTACTTTTCCATGCTGATGCTGTAA

Protein sequence

MEEKKQNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPSPKHKHCNEGFPSKLAFLYDGFPETEHMNVQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKFELNQACTYDSSSTQCMSFGGASSESTHFSVESSTAMESSSTEQEVAFASGENRIETVHKVQEHLLELDSREDYDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVNHEAQSSARAPTIDQEFEQYFSMLML

Homology

[Close]

BLAST of Carg12539 vs. NCBI nr
Match: XP_022934853.1 (uncharacterized protein LOC111441892 [Cucurbita moschata] >KAG7017286.1 Protein FAR-RED ELONGATED HYPOCOTYL 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 503.8 bits (1296), Expect = 8.5e-139
Identity = 254/254 (100.00%), Postives = 254/254 (100.00%), Query Frame = 0


Query: 1   MEEKKQNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPSPKHKHCNEGFPSKLAFLY 60
           MEEKKQNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPSPKHKHCNEGFPSKLAFLY
Sbjct: 1   MEEKKQNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPSPKHKHCNEGFPSKLAFLY 60

Query: 61  DGFPETEHMNVQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKFELNQAC 120
           DGFPETEHMNVQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKFELNQAC
Sbjct: 61  DGFPETEHMNVQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKFELNQAC 120

Query: 121 TYDSSSTQCMSFGGASSESTHFSVESSTAMESSSTEQEVAFASGENRIETVHKVQEHLLE 180
           TYDSSSTQCMSFGGASSESTHFSVESSTAMESSSTEQEVAFASGENRIETVHKVQEHLLE
Sbjct: 121 TYDSSSTQCMSFGGASSESTHFSVESSTAMESSSTEQEVAFASGENRIETVHKVQEHLLE 180

Query: 181 LDSREDYDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVNHEAQSSARAPT 240
           LDSREDYDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVNHEAQSSARAPT
Sbjct: 181 LDSREDYDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVNHEAQSSARAPT 240

Query: 241 IDQEFEQYFSMLML 255
           IDQEFEQYFSMLML
Sbjct: 241 IDQEFEQYFSMLML 254

[Close]

BLAST of Carg12539 vs. NCBI nr
Match: KAG6580534.1 (Protein FAR-RED ELONGATED HYPOCOTYL 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 501.5 bits (1290), Expect = 4.2e-138
Identity = 253/254 (99.61%), Postives = 253/254 (99.61%), Query Frame = 0


Query: 1   MEEKKQNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPSPKHKHCNEGFPSKLAFLY 60
           MEEKKQNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPSPKHKHCNEGFPSKLAFLY
Sbjct: 91  MEEKKQNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPSPKHKHCNEGFPSKLAFLY 150

Query: 61  DGFPETEHMNVQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKFELNQAC 120
           DGFPETEHMNVQ IKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKFELNQAC
Sbjct: 151 DGFPETEHMNVQLIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKFELNQAC 210

Query: 121 TYDSSSTQCMSFGGASSESTHFSVESSTAMESSSTEQEVAFASGENRIETVHKVQEHLLE 180
           TYDSSSTQCMSFGGASSESTHFSVESSTAMESSSTEQEVAFASGENRIETVHKVQEHLLE
Sbjct: 211 TYDSSSTQCMSFGGASSESTHFSVESSTAMESSSTEQEVAFASGENRIETVHKVQEHLLE 270

Query: 181 LDSREDYDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVNHEAQSSARAPT 240
           LDSREDYDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVNHEAQSSARAPT
Sbjct: 271 LDSREDYDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVNHEAQSSARAPT 330

Query: 241 IDQEFEQYFSMLML 255
           IDQEFEQYFSMLML
Sbjct: 331 IDQEFEQYFSMLML 344

[Close]

BLAST of Carg12539 vs. NCBI nr
Match: XP_023528627.1 (protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE [Cucurbita pepo subsp. pepo])

HSP 1 Score: 498.4 bits (1282), Expect = 3.6e-137
Identity = 251/254 (98.82%), Postives = 253/254 (99.61%), Query Frame = 0


Query: 1   MEEKKQNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPSPKHKHCNEGFPSKLAFLY 60
           MEEKKQNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPSPKHKHCNEGFPSKLAFLY
Sbjct: 1   MEEKKQNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPSPKHKHCNEGFPSKLAFLY 60

Query: 61  DGFPETEHMNVQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKFELNQAC 120
           +G PETEHMNVQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKFELNQAC
Sbjct: 61  NGLPETEHMNVQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKFELNQAC 120

Query: 121 TYDSSSTQCMSFGGASSESTHFSVESSTAMESSSTEQEVAFASGENRIETVHKVQEHLLE 180
           TYDSSSTQCMSFGGASSE+THFSVESSTAMESSSTEQEVAFASGENRIETVHKVQEHLLE
Sbjct: 121 TYDSSSTQCMSFGGASSENTHFSVESSTAMESSSTEQEVAFASGENRIETVHKVQEHLLE 180

Query: 181 LDSREDYDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVNHEAQSSARAPT 240
           LDSREDYDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVNHEAQSSARAPT
Sbjct: 181 LDSREDYDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVNHEAQSSARAPT 240

Query: 241 IDQEFEQYFSMLML 255
           IDQEFEQYFSMLML
Sbjct: 241 IDQEFEQYFSMLML 254

[Close]

BLAST of Carg12539 vs. NCBI nr
Match: XP_022983598.1 (protein FAR-RED ELONGATED HYPOCOTYL 1 [Cucurbita maxima])

HSP 1 Score: 478.0 bits (1229), Expect = 5.0e-131
Identity = 243/252 (96.43%), Postives = 246/252 (97.62%), Query Frame = 0


Query: 3   EKKQNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPSPKHKHCNEGFPSKLAFLYDG 62
           EK QNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPS KHKHCNEGFPSKLAFLY+G
Sbjct: 2   EKNQNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPSSKHKHCNEGFPSKLAFLYNG 61

Query: 63  FPETEHMNVQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKFELNQACTY 122
            PETEHMNVQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKFELNQACTY
Sbjct: 62  LPETEHMNVQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKFELNQACTY 121

Query: 123 DSSSTQCMSFGGASSESTHFSVESSTAMESSSTEQEVAFASGENRIETVHKVQEHLLELD 182
           DSSSTQCMSFGGASS ST+FSVESSTAMESSSTEQEVAFASGENRIETVHKVQEHLLELD
Sbjct: 122 DSSSTQCMSFGGASSGSTNFSVESSTAMESSSTEQEVAFASGENRIETVHKVQEHLLELD 181

Query: 183 SREDYDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVNHEAQSSARAPTID 242
           SRE YDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVN+E QSSARAPTID
Sbjct: 182 SREGYDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVNNEDQSSARAPTID 241

Query: 243 QEFEQYFSMLML 255
           QEFEQYFSMLML
Sbjct: 242 QEFEQYFSMLML 253

[Close]

BLAST of Carg12539 vs. NCBI nr
Match: XP_038904937.1 (protein FAR-RED ELONGATED HYPOCOTYL 1-like [Benincasa hispida])

HSP 1 Score: 412.1 bits (1058), Expect = 3.4e-111
Identity = 212/256 (82.81%), Postives = 230/256 (89.84%), Query Frame = 0


Query: 1   MEEKKQNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPSPKHKHCNEGFPSKLAFLY 60
           MEEK+QNP EINSFYVISKL+TNPFDLNKKRKL AEHLGLPS KHKHC+EGFPSK AFLY
Sbjct: 1   MEEKEQNPTEINSFYVISKLRTNPFDLNKKRKLQAEHLGLPSAKHKHCSEGFPSKSAFLY 60

Query: 61  DGFPETEHMNVQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKFELNQA- 120
            G  ETEHM+ QFIKG+ANVL F++GS  ES KDSNS  EESDSATSVFHG KFE NQA 
Sbjct: 61  GGLSETEHMDAQFIKGNANVLCFEEGSRLESVKDSNSLSEESDSATSVFHGGKFEPNQAI 120

Query: 121 -CTYDSSSTQCMSFGGASSESTHFSVESSTAMESSSTEQEVAFASGENRIETVHKVQEHL 180
            CTYDSS+TQ MSFGGASSESTHFSVESSTAMESSSTEQE AFASGENRIE++HK+QEHL
Sbjct: 121 TCTYDSSTTQSMSFGGASSESTHFSVESSTAMESSSTEQEAAFASGENRIESIHKLQEHL 180

Query: 181 LELDSREDYDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVNHEAQSSARA 240
           LELDS EDYD AEYG+D+ +QCTDQELE+L YSNGL+P+ YILSSGRWTVNHEAQS ARA
Sbjct: 181 LELDSHEDYDCAEYGNDDFKQCTDQELEELLYSNGLNPDTYILSSGRWTVNHEAQSRARA 240

Query: 241 PTIDQEFEQYFSMLML 255
           PTID+EFEQYFSMLML
Sbjct: 241 PTIDEEFEQYFSMLML 256

[Close]

BLAST of Carg12539 vs. ExPASy Swiss-Prot
Match: Q8S4Q6 (Protein FAR-RED ELONGATED HYPOCOTYL 1 OS=Arabidopsis thaliana OX=3702 GN=FHY1 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.2e-05
Identity = 46/139 (33.09%), Postives = 67/139 (48.20%), Query Frame = 0


Query: 135 ASSESTHFSVESSTAMESSSTEQEVAFASGENRIETVHKV-----QEHLLELDSREDYDF 194
           A SE+T+ + E  T    SS           N IE   +      ++ ++  +S  DY  
Sbjct: 67  ACSENTNGNSEIDTEYSMSSYVNSTTSMECNNDIEMKEESSGSCGEDKMISFESHLDY-- 126

Query: 195 AEYGHDETEQCTDQELEDLFY----------SNGLDPNA--YILSSGRWTVNHEAQS--S 254
             YG    E  +++ +E++ Y          + G   NA  ++LSSGRWTVN +  +   
Sbjct: 127 -IYGTQNLEDFSEKVIENILYLDEQEEEEEDAKGCSSNAAKFVLSSGRWTVNQDDSTLHE 186

[Close]

BLAST of Carg12539 vs. ExPASy TrEMBL
Match: A0A6J1F8W9 (uncharacterized protein LOC111441892 OS=Cucurbita moschata OX=3662 GN=LOC111441892 PE=4 SV=1)

HSP 1 Score: 503.8 bits (1296), Expect = 4.1e-139
Identity = 254/254 (100.00%), Postives = 254/254 (100.00%), Query Frame = 0


Query: 1   MEEKKQNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPSPKHKHCNEGFPSKLAFLY 60
           MEEKKQNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPSPKHKHCNEGFPSKLAFLY
Sbjct: 1   MEEKKQNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPSPKHKHCNEGFPSKLAFLY 60

Query: 61  DGFPETEHMNVQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKFELNQAC 120
           DGFPETEHMNVQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKFELNQAC
Sbjct: 61  DGFPETEHMNVQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKFELNQAC 120

Query: 121 TYDSSSTQCMSFGGASSESTHFSVESSTAMESSSTEQEVAFASGENRIETVHKVQEHLLE 180
           TYDSSSTQCMSFGGASSESTHFSVESSTAMESSSTEQEVAFASGENRIETVHKVQEHLLE
Sbjct: 121 TYDSSSTQCMSFGGASSESTHFSVESSTAMESSSTEQEVAFASGENRIETVHKVQEHLLE 180

Query: 181 LDSREDYDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVNHEAQSSARAPT 240
           LDSREDYDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVNHEAQSSARAPT
Sbjct: 181 LDSREDYDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVNHEAQSSARAPT 240

Query: 241 IDQEFEQYFSMLML 255
           IDQEFEQYFSMLML
Sbjct: 241 IDQEFEQYFSMLML 254

[Close]

BLAST of Carg12539 vs. ExPASy TrEMBL
Match: A0A6J1J862 (protein FAR-RED ELONGATED HYPOCOTYL 1 OS=Cucurbita maxima OX=3661 GN=LOC111482155 PE=4 SV=1)

HSP 1 Score: 478.0 bits (1229), Expect = 2.4e-131
Identity = 243/252 (96.43%), Postives = 246/252 (97.62%), Query Frame = 0


Query: 3   EKKQNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPSPKHKHCNEGFPSKLAFLYDG 62
           EK QNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPS KHKHCNEGFPSKLAFLY+G
Sbjct: 2   EKNQNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPSSKHKHCNEGFPSKLAFLYNG 61

Query: 63  FPETEHMNVQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKFELNQACTY 122
            PETEHMNVQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKFELNQACTY
Sbjct: 62  LPETEHMNVQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKFELNQACTY 121

Query: 123 DSSSTQCMSFGGASSESTHFSVESSTAMESSSTEQEVAFASGENRIETVHKVQEHLLELD 182
           DSSSTQCMSFGGASS ST+FSVESSTAMESSSTEQEVAFASGENRIETVHKVQEHLLELD
Sbjct: 122 DSSSTQCMSFGGASSGSTNFSVESSTAMESSSTEQEVAFASGENRIETVHKVQEHLLELD 181

Query: 183 SREDYDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVNHEAQSSARAPTID 242
           SRE YDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVN+E QSSARAPTID
Sbjct: 182 SREGYDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVNNEDQSSARAPTID 241

Query: 243 QEFEQYFSMLML 255
           QEFEQYFSMLML
Sbjct: 242 QEFEQYFSMLML 253

[Close]

BLAST of Carg12539 vs. ExPASy TrEMBL
Match: A0A0A0LFJ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734140 PE=4 SV=1)

HSP 1 Score: 407.9 bits (1047), Expect = 3.1e-110
Identity = 210/256 (82.03%), Postives = 230/256 (89.84%), Query Frame = 0


Query: 1   MEEKKQNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPSPKHKHCNEGFPSKLAFLY 60
           MEEK+QNPAEINSFYVISKL++NPFDLNKKRKLPAEHLGLPSPKHKHC+E F SK AFLY
Sbjct: 92  MEEKEQNPAEINSFYVISKLRSNPFDLNKKRKLPAEHLGLPSPKHKHCSEEFASKSAFLY 151

Query: 61  DGFPETEHMNVQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKFELNQA- 120
            G PETEHMNVQFIK +ANVL FD+ S PES KDSNS  EESDSATSVFHGAKFELNQA 
Sbjct: 152 GGLPETEHMNVQFIKENANVLCFDEVSRPESVKDSNSLSEESDSATSVFHGAKFELNQAI 211

Query: 121 -CTYDSSSTQCMSFGGASSESTHFSVESSTAMESSSTEQEVAFASGENRIETVHKVQEHL 180
            CT+D+S+T+ MSFGGASSES HFSVESSTAMESSSTEQE AF SGENR+ET+ K+QE L
Sbjct: 212 TCTHDTSTTRSMSFGGASSESIHFSVESSTAMESSSTEQETAFPSGENRMETIQKLQEQL 271

Query: 181 LELDSREDYDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVNHEAQSSARA 240
           LELDS EDY+ AEY +D+T+QCTDQELE+LFYSNGL+PN YILSSGRW +NHEAQS ARA
Sbjct: 272 LELDSHEDYNCAEYENDDTKQCTDQELEELFYSNGLNPNTYILSSGRWAINHEAQSRARA 331

Query: 241 PTIDQEFEQYFSMLML 255
           PTIDQEFEQYFSMLML
Sbjct: 332 PTIDQEFEQYFSMLML 347

[Close]

BLAST of Carg12539 vs. ExPASy TrEMBL
Match: A0A5A7TMJ2 (Protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001600 PE=4 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 1.4e-107
Identity = 205/252 (81.35%), Postives = 223/252 (88.49%), Query Frame = 0


Query: 5   KQNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPSPKHKHCNEGFPSKLAFLYDGFP 64
           ++NP EINSFY+ISKL  NP+DLNKKRKLPAEHLGLPSPKHKHC+EGF SK AFLY G P
Sbjct: 68  EENPTEINSFYIISKL--NPYDLNKKRKLPAEHLGLPSPKHKHCSEGFASKSAFLYGGLP 127

Query: 65  ETEHMNVQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKFELNQA--CTY 124
           ET HMNVQFIK +ANVL FD+GS PES KDSNS  EESDSATSVFHGAKFELNQA  CT+
Sbjct: 128 ETGHMNVQFIKENANVLCFDEGSRPESVKDSNSLSEESDSATSVFHGAKFELNQAITCTH 187

Query: 125 DSSSTQCMSFGGASSESTHFSVESSTAMESSSTEQEVAFASGENRIETVHKVQEHLLELD 184
           D+S+TQ MSFGGASSESTHFSVESSTAME  STEQE AF SGENRIET+HK+QEHLLELD
Sbjct: 188 DTSTTQSMSFGGASSESTHFSVESSTAMELISTEQETAFPSGENRIETIHKLQEHLLELD 247

Query: 185 SREDYDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVNHEAQSSARAPTID 244
             EDYD AEY + +T+QCTDQELE+LFYSNGL+PN YILSSGRW +NHEAQS ARAPTID
Sbjct: 248 GHEDYDCAEYENGDTKQCTDQELEELFYSNGLNPNTYILSSGRWAINHEAQSRARAPTID 307

Query: 245 QEFEQYFSMLML 255
           QEFEQYFSMLML
Sbjct: 308 QEFEQYFSMLML 317

[Close]

BLAST of Carg12539 vs. ExPASy TrEMBL
Match: A0A1S3B5W9 (uncharacterized protein LOC103486380 OS=Cucumis melo OX=3656 GN=LOC103486380 PE=4 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 1.4e-107
Identity = 205/252 (81.35%), Postives = 223/252 (88.49%), Query Frame = 0


Query: 5   KQNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPSPKHKHCNEGFPSKLAFLYDGFP 64
           ++NP EINSFY+ISKL  NP+DLNKKRKLPAEHLGLPSPKHKHC+EGF SK AFLY G P
Sbjct: 2   EENPTEINSFYIISKL--NPYDLNKKRKLPAEHLGLPSPKHKHCSEGFASKSAFLYGGLP 61

Query: 65  ETEHMNVQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKFELNQA--CTY 124
           ET HMNVQFIK +ANVL FD+GS PES KDSNS  EESDSATSVFHGAKFELNQA  CT+
Sbjct: 62  ETGHMNVQFIKENANVLCFDEGSRPESVKDSNSLSEESDSATSVFHGAKFELNQAITCTH 121

Query: 125 DSSSTQCMSFGGASSESTHFSVESSTAMESSSTEQEVAFASGENRIETVHKVQEHLLELD 184
           D+S+TQ MSFGGASSESTHFSVESSTAME  STEQE AF SGENRIET+HK+QEHLLELD
Sbjct: 122 DTSTTQSMSFGGASSESTHFSVESSTAMELISTEQETAFPSGENRIETIHKLQEHLLELD 181

Query: 185 SREDYDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVNHEAQSSARAPTID 244
             EDYD AEY + +T+QCTDQELE+LFYSNGL+PN YILSSGRW +NHEAQS ARAPTID
Sbjct: 182 GHEDYDCAEYENGDTKQCTDQELEELFYSNGLNPNTYILSSGRWAINHEAQSRARAPTID 241

Query: 245 QEFEQYFSMLML 255
           QEFEQYFSMLML
Sbjct: 242 QEFEQYFSMLML 251

[Close]

BLAST of Carg12539 vs. TAIR 10
Match: AT2G37678.1 (far-red elongated hypocotyl 1 )

HSP 1 Score: 52.0 bits (123), Expect = 8.2e-07
Identity = 46/139 (33.09%), Postives = 67/139 (48.20%), Query Frame = 0


Query: 135 ASSESTHFSVESSTAMESSSTEQEVAFASGENRIETVHKV-----QEHLLELDSREDYDF 194
           A SE+T+ + E  T    SS           N IE   +      ++ ++  +S  DY  
Sbjct: 67  ACSENTNGNSEIDTEYSMSSYVNSTTSMECNNDIEMKEESSGSCGEDKMISFESHLDY-- 126

Query: 195 AEYGHDETEQCTDQELEDLFY----------SNGLDPNA--YILSSGRWTVNHEAQS--S 254
             YG    E  +++ +E++ Y          + G   NA  ++LSSGRWTVN +  +   
Sbjct: 127 -IYGTQNLEDFSEKVIENILYLDEQEEEEEDAKGCSSNAAKFVLSSGRWTVNQDDSTLHE 186

[Close]

BLAST of Carg12539 vs. TAIR 10
Match: AT5G02200.1 (far-red-elongated hypocotyl1-like )

HSP 1 Score: 45.1 bits (105), Expect = 1.0e-04
Identity = 47/141 (33.33%), Postives = 71/141 (50.35%), Query Frame = 0


Query: 120 CTYDSSSTQCMSFGGASSESTH---FSVESSTAMESSSTEQEVAFASGENRIETV-HKVQ 179
           C+Y   +T+      +S+  T    +  + S     SS+    A +S E     V HK Q
Sbjct: 53  CSYAMENTKTSDEASSSASFTGPSLYMFKDSIYSTGSSSSGYAATSSIEQCFSKVDHKTQ 112

Query: 180 EHLLELDSREDYDFAEYGHDETEQCTDQELEDLFYSNGLDP-NAYILSSGRWTV-NHEAQ 239
           E        +D+   E+ + ++E      +EDL     L+P  +YILSS RW+V N +++
Sbjct: 113 E------DTQDFTHMEFIYHDSEFA----VEDL--QEVLNPVESYILSSARWSVSNQDSK 172

Query: 240 SSARAPTIDQEFEQYFSMLML 255
            +   PTIDQEFEQYFS LM+
Sbjct: 173 EATTKPTIDQEFEQYFSTLMM 181

[Close]

BLAST of Carg12539 vs. TAIR 10
Match: AT5G02200.2 (far-red-elongated hypocotyl1-like )

HSP 1 Score: 45.1 bits (105), Expect = 1.0e-04
Identity = 47/141 (33.33%), Postives = 71/141 (50.35%), Query Frame = 0


Query: 120 CTYDSSSTQCMSFGGASSESTH---FSVESSTAMESSSTEQEVAFASGENRIETV-HKVQ 179
           C+Y   +T+      +S+  T    +  + S     SS+    A +S E     V HK Q
Sbjct: 73  CSYAMENTKTSDEASSSASFTGPSLYMFKDSIYSTGSSSSGYAATSSIEQCFSKVDHKTQ 132

Query: 180 EHLLELDSREDYDFAEYGHDETEQCTDQELEDLFYSNGLDP-NAYILSSGRWTV-NHEAQ 239
           E        +D+   E+ + ++E      +EDL     L+P  +YILSS RW+V N +++
Sbjct: 133 E------DTQDFTHMEFIYHDSEFA----VEDL--QEVLNPVESYILSSARWSVSNQDSK 192

Query: 240 SSARAPTIDQEFEQYFSMLML 255
            +   PTIDQEFEQYFS LM+
Sbjct: 193 EATTKPTIDQEFEQYFSTLMM 201

The following BLAST results are available for this feature:

BLAST of Carg12539 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022934853.1	8.5e-139	100.00	uncharacterized protein LOC111441892 [Cucurbita moschata] >KAG7017286.1 Protein ...	[more]
KAG6580534.1	4.2e-138	99.61	Protein FAR-RED ELONGATED HYPOCOTYL 1, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_023528627.1	3.6e-137	98.82	protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE [Cucurbita pepo subsp. pepo]	[more]
XP_022983598.1	5.0e-131	96.43	protein FAR-RED ELONGATED HYPOCOTYL 1 [Cucurbita maxima]	[more]
XP_038904937.1	3.4e-111	82.81	protein FAR-RED ELONGATED HYPOCOTYL 1-like [Benincasa hispida]	[more]

BLAST of Carg12539 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S4Q6	1.2e-05	33.09	Protein FAR-RED ELONGATED HYPOCOTYL 1 OS=Arabidopsis thaliana OX=3702 GN=FHY1 PE...	[more]

BLAST of Carg12539 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F8W9	4.1e-139	100.00	uncharacterized protein LOC111441892 OS=Cucurbita moschata OX=3662 GN=LOC1114418...	[more]
A0A6J1J862	2.4e-131	96.43	protein FAR-RED ELONGATED HYPOCOTYL 1 OS=Cucurbita maxima OX=3661 GN=LOC11148215...	[more]
A0A0A0LFJ8	3.1e-110	82.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734140 PE=4 SV=1	[more]
A0A5A7TMJ2	1.4e-107	81.35	Protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE-like isoform X2 OS=Cucumis melo var. ...	[more]
A0A1S3B5W9	1.4e-107	81.35	uncharacterized protein LOC103486380 OS=Cucumis melo OX=3656 GN=LOC103486380 PE=...	[more]

BLAST of Carg12539 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37678.1	8.2e-07	33.09	far-red elongated hypocotyl 1	[more]
AT5G02200.1	1.0e-04	33.33	far-red-elongated hypocotyl1-like	[more]
AT5G02200.2	1.0e-04	33.33	far-red-elongated hypocotyl1-like	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37723:SF1	PROTEIN FAR-RED ELONGATED HYPOCOTYL 1	coord: 1..254
IPR037766	Protein FAR-RED ELONGATED HYPOCOTYL 1	PANTHER	PTHR37723	PROTEIN FAR-RED ELONGATED HYPOCOTYL 1	coord: 1..254

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12539-RA	Carg12539-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051457	maintenance of protein location in nucleus
biological_process	GO:0009639	response to red or far red light
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus