Carg12485 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg12485
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr14: 329363 .. 332761 (-)
RNA-Seq ExpressionCarg12485
SyntenyCarg12485
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCCGCTTCTACCGTTCCACTTCCAATTCCTCCAGTCGGTTTCTCGGCCTTTCTCCTTGCCGGCGTGAACTTCGTATTCTCGAGCAGAATCCCTAGGAGTTCATCTTCTTCTTTCAACTTTTTAGTTCTTCGATTTTGTTTACTTTGCGTCTCATTGAGGCGGAGGGGATGAAATTGCAGTCAGGGAAAGCGATGAAATCAGTGGTATGGAAATTTACGCCCACTTGTGTTGTTTATTTGTTTGGTGTTGCTTTTCTAAATTAATTAGGGTTTTCTTTCATTATATTCTCCTCGTGGCCATTCGCGCTTGGACTTTTGTTTTTCTAATACAAAAAGTTCGCAGGCGAGGCGTTCGGGCCAGGGGTACTCGTTGTTCCAAACAAATATTATACAATACGATGGCCAAGATTTTATTGACATTGATTTTCACGAGTCTTTATTCTCCGGCTAAGCAGTATTTCACGTCGTTACTCTTTTGATTTTGAAATTAGTTTCATATGATTTGCTCGTTCCTGTTGGTTTTGCTCGCATGATTAAACCATTTAATTGAATTTAACTTGATAGTTCTTGAGCTTCCACAGCTGATTAATTGGAAAAGTGCATTGGTTACTCTATGAAGGTGAAGTGGCCTTAACAGTCCTCAGAGTTTGGAGACTGGTTAGATTTATTTGGGGAGGAAGTATTGTGACGGCAATAAAACCTGCCTCTACTGTAATAGACATGATATTGCACAGAGATTGGGTTCAAAAGGAACAGAGAGTAATATTTCTGATCATGATATTGTAGAAAATTAGTAAATGAATGCGATTGGGAAGATTCATTCTCTTAAACACCTATGTAGAGGTCTCTTATTTGAGTCTTTGAGTAAACCCTTGATGCCTTCAAAGGTTGTGCATTAGAGTAATTGCAGACTCACAAAAACAGACGAAAACAAAGAAAAGCTATAATTTGGGAAATTTCACATCTGGGATAAAAGATTGGGTCATGATCTCATTATGATTCTTGGGAGGAAAATGGTTCACTGTTAGTGTATTAAATAAATTGTAGTTTGCTTTCCCTAATCCTAAGTATAGCTGCAAATGATGCAATGATCGGAGAATAATCTTTCTATCACGCTTCCCTTTTGCGTTATATGAGTCTTACTCTGCTTGTTCCATAGGTGTATTCCATAAGCCTCTTTATTTATCTGAGCTTGTTTTGCTTTTGCCCAACTTGCAGCTGCTTGGTTTTCTGGCTTTTTAAAAAGTTCACCAATCTTAGTCCAGTCCACTGGGTAGAACGCTGCAGGTGGTAATACGGTGACATTGAAACCAGGTCTAGCTGTGGCTCCTGTTACCTTTGACATTACTCTGGAGACCAGAAAAGGTCCATTATAGCCCCATCTGCTCCCATCAAAATTTGACGCGAAATCTTCCATGAATTTCTCTAGAAGTGGATGATTCTTATCAAAAATAAGAACAGCATTATTCAGTATTCTCCAGTTCTTAGATACTGGATCAATACTTTGTGCGCCAATTGAGTTCTTCAAACCGATGAAAGACTTCAAAACAATAAAATCTGTATCGATGTAAACACCTCCATACTTGTATAAAACTGCAAGTCTCATGAGGTTAGATAGATTCTGAGCTAAAGGAATCTGACCTGGATCTTTTTTTCCTCTCTTCAACTCATCAAACCAAGCCTCCACCGGGGTGTTTTTGAACAGCGAAGGCAAGTCCGGTGTGATTGCCTGAATTTTAAACCCATGATCAAGTAGAGGTTTAAGAATCTGGCAGCCTCTTTCTGAATCCAGTGTTCTTGATAGAATAGTTAAGCATCCACGTGGGTGAGACTTAAAAACACTTTCTACTGCCATTAATTCTCTGCCCCTGAAAGACCTTGCTGGAGATACCCATGTCATGAAGAACTGTGTCTCACACTTTTGGCTGAGGAACTCCAGAAATCGATCGTGGAACTTCTGCGTCAAGTTGTTAGACTGTAAAATCCGAAAGTCAGGAAGATGCTTCCTAAACCAATCAATTCTTTCCTTTTTTCCTGAAATATTGGATGGAACTACTAGCGAATCGAAAGGTTCACTATCATTATCATCCCTGTTATTTGGCGAGGACTGCAGTGGCTCTCCAACTAAAGTTGGCTCAGTGTGCACTTGTGCGATGGGCGCAATTGTTGAGTTTGAATTGTCTTTCTCATCTATGGATACTGTTGGAAACGAAACTTTGTAGATTATGCAATCTCCACATATGAGGAAGATGATGGCTGCGAGCAAGATGGCTGGCAATATGGGTGTTATAGCACACCTTTCAGACATTTCTTACAGGAGTTTTTTTCCCACAAGAAGAGAAGTCTTAATCCAGATATATGCAATGAGGCTTATTAGGATAAACTCATGATTTTAGGGAATTTGTTGTCGATCACACCAATGGAAGACACAATTAGAAGGAAATTAATTTATTCAGGCGGATTGCTTGGTCTCCTGGATGAGGTTGGTAATATTTTATAAAGTCCACAGAGAAGGAAATAGAATTGAATGGGTCAAATCTAAGATTTCAAGAACGGTGGCGAGTGCTTATCACAAAGGTGGTGTCGAGTATGAAAGCATTGAAGTGAACATTTTCTTTCATAGAAGACTTTCACATTATGAAATAACGCTGGTACTGTACTTCATGGTTGACCAGCAGCCTCCAGTTTCGGTCATTACATTTCAAAAGGTGAAGAAAAGGAGAGGGAAAGTTAGGTTCATTATAATGACACATGTGGGCAAGATGAAGGCAAAGAACATTAGAATAAGAAATGATGGCAGCAACCGGGATGAAGAGGAGAGCAAAACATCTCTTATAAGAGTGTGAAAATCTCGGCCTAGTATACGCGTTTTGAAGAGGAGAGCAAAACATCTCTTATAAGAGTGTGAAAATCTCGGCCTAGTATACGCGTTTTAAAACTGTGAGGCTGACAATGTTATGTAACGGGTCAAAGCAGATAATATTTACTAGCGGTGGTCTCGGACTGTTACAAATGGTATTAGAATCGGACACTGAACAATGTGCCAACAACGAGGTGGATTGTGAGATCCCATATGGATTGGAGAGGGAAAAAAAATGTTAAGGGTGAAAAAACTTCTCTCTAGTAAATACGTCATTGACGTTGATACGGATCAAAACGGACAATATTTAGGTGGGCCCAAGTATTGTGCAACTAACTCCAATTGCGTACACTAAACATTTGAAGCATACAAGTTGCAGGTTCGTTTACTTGGTTATTTGTTATCCAAAATGTTTTTCTGCAGGTAATTGCTTATCATTGTGGTTACATGCCGACTTGTTTGGTGCCCATATATCTCAGAGGAACCACAATAAGAAATGCGGCCTCATCTACAACTTCAAGCAATGAGAGGTAG

mRNA sequence

ATGGCGTCCGCTTCTACCGTTCCACTTCCAATTCCTCCAGTCGGTTTCTCGGCCTTTCTCCTTGCCGGCGTGAACTTCGCGGAGGGGATGAAATTGCAGTCAGGGAAAGCGATGAAATCAGTGGCGGATTGCTTGGTCTCCTGGATGAGGTTGGTAATATTTTATAAAGTCCACAGAGAAGGAAATAGAATTGAATGGGTCAAATCTAAGATTTCAAGAACGGTGGCGAGTGCTTATCACAAAGGTGGTGTCGAGTATGAAAGCATTGAAGTGAACATTTTCTTTCATAGAAGACTTTCACATTATGAAATAACGCTGGTACTGTACTTCATGGTTGACCAGCAGCCTCCAGTTTCGGTCATTACATTTCAAAAGGTAATTGCTTATCATTGTGGTTACATGCCGACTTGTTTGGTGCCCATATATCTCAGAGGAACCACAATAAGAAATGCGGCCTCATCTACAACTTCAAGCAATGAGAGGTAG

Coding sequence (CDS)

ATGGCGTCCGCTTCTACCGTTCCACTTCCAATTCCTCCAGTCGGTTTCTCGGCCTTTCTCCTTGCCGGCGTGAACTTCGCGGAGGGGATGAAATTGCAGTCAGGGAAAGCGATGAAATCAGTGGCGGATTGCTTGGTCTCCTGGATGAGGTTGGTAATATTTTATAAAGTCCACAGAGAAGGAAATAGAATTGAATGGGTCAAATCTAAGATTTCAAGAACGGTGGCGAGTGCTTATCACAAAGGTGGTGTCGAGTATGAAAGCATTGAAGTGAACATTTTCTTTCATAGAAGACTTTCACATTATGAAATAACGCTGGTACTGTACTTCATGGTTGACCAGCAGCCTCCAGTTTCGGTCATTACATTTCAAAAGGTAATTGCTTATCATTGTGGTTACATGCCGACTTGTTTGGTGCCCATATATCTCAGAGGAACCACAATAAGAAATGCGGCCTCATCTACAACTTCAAGCAATGAGAGGTAG

Protein sequence

MASASTVPLPIPPVGFSAFLLAGVNFAEGMKLQSGKAMKSVADCLVSWMRLVIFYKVHREGNRIEWVKSKISRTVASAYHKGGVEYESIEVNIFFHRRLSHYEITLVLYFMVDQQPPVSVITFQKVIAYHCGYMPTCLVPIYLRGTTIRNAASSTTSSNER
Homology
[Close]
BLAST of Carg12485 vs. NCBI nr
Match: KAG7017232.1 (hypothetical protein SDJN02_19095, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 320.9 bits (821), Expect = 6.5e-84
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0 

Query: 1   MASASTVPLPIPPVGFSAFLLAGVNFAEGMKLQSGKAMKSVADCLVSWMRLVIFYKVHRE 60
           MASASTVPLPIPPVGFSAFLLAGVNFAEGMKLQSGKAMKSVADCLVSWMRLVIFYKVHRE
Sbjct: 1   MASASTVPLPIPPVGFSAFLLAGVNFAEGMKLQSGKAMKSVADCLVSWMRLVIFYKVHRE 60

Query: 61  GNRIEWVKSKISRTVASAYHKGGVEYESIEVNIFFHRRLSHYEITLVLYFMVDQQPPVSV 120
           GNRIEWVKSKISRTVASAYHKGGVEYESIEVNIFFHRRLSHYEITLVLYFMVDQQPPVSV
Sbjct: 61  GNRIEWVKSKISRTVASAYHKGGVEYESIEVNIFFHRRLSHYEITLVLYFMVDQQPPVSV 120

Query: 121 ITFQKVIAYHCGYMPTCLVPIYLRGTTIRNAASSTTSSNER 162
           ITFQKVIAYHCGYMPTCLVPIYLRGTTIRNAASSTTSSNER
Sbjct: 121 ITFQKVIAYHCGYMPTCLVPIYLRGTTIRNAASSTTSSNER 161

[Close]
BLAST of Carg12485 vs. NCBI nr
Match: XP_022934635.1 (uncharacterized protein LOC111441770 [Cucurbita moschata])

HSP 1 Score: 57.4 bits (137), Expect = 1.3e-04
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0 

Query: 134 MPTCLVPIYLRGTTIRNAASSTTSSNER 162
           MPTCLVPIYLRGTTIRNAASSTTSSNER
Sbjct: 1   MPTCLVPIYLRGTTIRNAASSTTSSNER 28

[Close]
BLAST of Carg12485 vs. NCBI nr
Match: XP_023528721.1 (putative receptor-like protein kinase At3g47110 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 54.7 bits (130), Expect = 8.6e-04
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = 0 

Query: 134 MPTCLVPIYLRGTTIRNAASSTTSSNER 162
           MPTCLVPIY RGTTIRNAASSTTSSNER
Sbjct: 1   MPTCLVPIYHRGTTIRNAASSTTSSNER 28

[Close]
BLAST of Carg12485 vs. ExPASy TrEMBL
Match: A0A6J1F898 (uncharacterized protein LOC111441770 OS=Cucurbita moschata OX=3662 GN=LOC111441770 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 6.5e-05
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0 

Query: 134 MPTCLVPIYLRGTTIRNAASSTTSSNER 162
           MPTCLVPIYLRGTTIRNAASSTTSSNER
Sbjct: 1   MPTCLVPIYLRGTTIRNAASSTTSSNER 28

The following BLAST results are available for this feature:
BLAST of Carg12485 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7017232.16.5e-84100.00hypothetical protein SDJN02_19095, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022934635.11.3e-04100.00uncharacterized protein LOC111441770 [Cucurbita moschata][more]
XP_023528721.18.6e-0496.43putative receptor-like protein kinase At3g47110 [Cucurbita pepo subsp. pepo][more]
BLAST of Carg12485 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg12485 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1F8986.5e-05100.00uncharacterized protein LOC111441770 OS=Cucurbita moschata OX=3662 GN=LOC1114417... [more]
BLAST of Carg12485 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg12485-RACarg12485-RAmRNA