Carg12431 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg12431
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	KH domain-containing protein
Location	Carg_Chr14: 40295 .. 43683 (+)
RNA-Seq Expression	Carg12431
Synteny	Carg12431

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGGGAGAGTATCCAATTCTAAAGGAAGGCCTTTACGCCTCCATGAATACGCACAACAATACATTGCGTGGGTAAAAATTTAGGCTAAAAACTTCCTAGTATTCAGAAAAAATTTAGGCTTTCTTTCTGCAAATTCTCCTTTCCTTCGCTTCCTCTACCTCTTCCCTTCATTGGTATTGGTATTGGTATTGGTATTGGTGCTTGTGTCCTCCGCATCAACAGCACCTGAGAACTGTTTCCCTTCCTATTGTTTTGTTGGTTGAGATTCCGAATAGTTTAAAGAAAGAGACCCAAGAAGTAATGTCAGGTTTGTATAATCCCAACTTCTCTCCTGCAAGAGCTGCTTCTCCTCAGATTAGAAGCAGCGCTGATGCTGACAGGTAGGTTCATTTGTTTCATCTTCTTCTTCATCTCCCTCTCCTTCTTCTTCTGATCTGTGTGGGGGTTTATTCTTTAGCCACTACTTGTCGGAGCTGTTGGCCGAGCATCACAAACTCGGACCCTTCATGCAAATCCTTCCTATTTGTAGCCGACTTTTGAATCAAGGTGTAGTTTTCATTCCCTGCTTTCATGCAAATCCTTCCTGCTTTCATGCAAATCCTTCCTATGCTTTCCTATTAACATCGCCCCCCACCCTTCACTCTTTGCCTACTGCTTTCTTATAACATCTTACCACCACTTCACTTTCATTTCATTTCATTAAATCTACTCACTATTCTCATAAAAATCTAATCTGAGATTTTATGTTTGGGAGTCACCCCTTTTTTTCACTTTTAGTTGCTCTCAGTCAAACTTTTCTTTTCCTAAAGCCTTCATGCAAGTGAGTTGAGTTGAATTGACAGTAATTCACCTTTAGTTTTAGTTGTTTAACCAGGTTCTGAAGCAGAAAAAATTATGGTACAAGGCAGAGGCATTAAATTGAACCATAATCTAGATGAGTTAAGAGTATTAGTAGAGAAATAGTGGGAGTAGGAATGTAACTGTTTCAGAAGTTTGTTGAAGCTTATGGTTATAGGGCGAGTGAGTATAGGATTTGTAGGCCGAATTCTAGGACAATGTAATTTTCTTCCATATTACAATATAATTTCATTCGTTTACCCATCCTAACACTCCATTGCATTTCAAATAATCAAATACCTGTCCATTAATTTGTTCACTATCACATTATTTGCCTACAAAAATATTTCAAATCAATATAGGTTTTTTCACCAGGTTAAAAGATGGCGTTGGATCTTCACTCACATCCAAGAAAAGCAGAAAAAGAAAATGAAATGCAAGATAATAAAATGGGATAAATATCAATGATCAACTGAAGCCTGTAGGTTATGTTACATAAAAATCTAACTAAATATTCGGAACCCCACCTAGACAGTAATGCATATTACATGGATGAAGAAGTAATGTGGTATCTACATTTGACAGTAAACTATATGTGCAGAGATTTTGCGGGTTTCTGGAATGATGTCCAACCAAGGTTTTAGTGACTTGGAGAGATTACGACAAAGAAGCCCTAGTCCAATGCCTTCTTCTAACCTCGTCTCAAATGCTTCTGGCGCAGGTTTTGGCGGCTGGAATGGACTTCCTCAGGAGGTAACTTAAAAATTTACCTGCCACCGTTTTAAAGTTCTATCCTAACTTACTTGATGGTTGGCCAAGAAAACTTCAAGTCTAGGGAACTCTTTTTATTTTTGAGCAACTCAGGAGCTAATTTGAGTTTTCTATGCAGTTTAGTTCAAAATACTTGGTTTGGAAAAATATGATCAAGCTGCTTAAACAAAAGTGTAGTCATCATTAGGAAACTATTTACAGGCTTTTGTTTTCAAAGGAAGAACAATTGCTGTTCTCAAAAATAGAGCACACCGCACACGTGAGAGCAAGCTATAGAAAAGGAAAAAGAAAAAGAAGAAAACCATCTTTAAGAAACAGTTGAATAAATATTGTTTCACTGAACTTTTGTTATAGGTAGGGAAAAGAAAATTTTATATACAACTCCCCAACAGCTCCTCTGTTCCTTTATCCTGTTCCACAGTTCTGTCCCACCCACATATTAATCCTGGGCCTCACTAGATAGCATCTCAAGTCATTAAACTCTCGCAAGTCGTGTAGGAAGTAGATTTCATGATGTCTGGACCAACAAACAAATAAAAATGGGTCTTCGTAAGCATTCTTGTTTGCTTGCAGTGCTTTCAAGCCGGTATCAAAGCTTAAGTATTTGCTCAAATCTATGAATTATATTCAATAAAATATCTGTTTCCTATGTCTGTATAAAACTTATGAGTTGTGCTATAATCCTGCTACTATTCTGCCATTACTTTTGCTTGAAAGAATACTCAGTTATTGATAAACATGCAGTTCCCATAGTTGTTTAATTTTTGAAGTTAAAGCACCCAAGTTCTGGTTGCTCACAGATGTGAAAGAATAGTATTCCAACATTATAAACTAACCGATAAAAACTTCCATCTTGTGTTAAAAAATGTTATAAAAAAATTGACCACCGATGCCACTTGTTTTTCTTTTCACAGCAAATGTTAAGTGGAAATCCTGGAATGACAATGGACTGGCAAGGTGCTCCTGCAAGCCCTAGTTCATTTACTGTAAAGAGGATTTTGCAGTTGGAAATTCCAGTGGACACGTACCCAAATGTAAGTTCTTTAAACAAGTGTCTGAGTACGTGTTTTTAAAAATGTGTTATAAAACTTTGATTTGTTTGGTTTCTGGGATGTCAGTTCAATTTTGTTGGGCGGCTTCTTGGACCCAGAGGCAATTCTCTGAAACGGGTGGAAGCTACTACAGGATGCCGTGTGTATATTAGAGGAAAGGGGTCAATTAAAGATCCAGAGAAGGTATTTTAGGTGAAATTGCTTGGATGAGACCCTCGTGTAAAATACTCTCTCTAGGCCACCATTTTTACCATTGGATGCTTAACATTGAGTTTTGTTGTTGGTTATTTATTTCTTTATCTATCACTGTTTTAAACTCTCAAGGAAGAGAAACTCCGTGGAAGGCTTGGTTATGAACACCTGAATGAACCGCTGCATGTCCTAATTGAGGCTGATTTACCGCCCAATACCGTTGATATCAGGCTGAGACAGGCACAAGAAATTATAGAAGAACTACTCAAACCCGTGGTACTGTTTACTTTCCTCATCAAGTTTAATTTGATTTTAGGATAGAGATGATCAATTTATTTGTTGGTGCATTTATTGTTCACTACTAGATTCAATATATGTGTACGCAGGACGAGCCAAATGATTATATCAAAAGACAACAATTGCGTGAATTAGCAATGCTGAACTCAAATTTGAGAGAAGAAAGTCCTGGCCCCAGCGGCAGTGTTTCTCCTTTCAATTCAAGCGGGATGAAGCGGGCTAAAACTGGTCGCTGA

mRNA sequence

ATGGTAGGGAGAGTATCCAATTCTAAAGGAAGGCCTTTACGCCTCCATGAATACGCACAACAATACATTGCGTGGATTCCGAATAGTTTAAAGAAAGAGACCCAAGAAGTAATGTCAGGTTTGTATAATCCCAACTTCTCTCCTGCAAGAGCTGCTTCTCCTCAGATTAGAAGCAGCGCTGATGCTGACAGCCACTACTTGTCGGAGCTGTTGGCCGAGCATCACAAACTCGGACCCTTCATGCAAATCCTTCCTATTTGTAGCCGACTTTTGAATCAAGAGATTTTGCGGGTTTCTGGAATGATGTCCAACCAAGGTTTTAGTGACTTGGAGAGATTACGACAAAGAAGCCCTAGTCCAATGCCTTCTTCTAACCTCGTCTCAAATGCTTCTGGCGCAGGTTTTGGCGGCTGGAATGGACTTCCTCAGGAGCAAATGTTAAGTGGAAATCCTGGAATGACAATGGACTGGCAAGGTGCTCCTGCAAGCCCTAGTTCATTTACTGTAAAGAGGATTTTGCAGTTGGAAATTCCAGTGGACACGTACCCAAATTTCAATTTTGTTGGGCGGCTTCTTGGACCCAGAGGCAATTCTCTGAAACGGGTGGAAGCTACTACAGGATGCCGTGTGTATATTAGAGGAAAGGGGTCAATTAAAGATCCAGAGAAGGAAGAGAAACTCCGTGGAAGGCTTGGTTATGAACACCTGAATGAACCGCTGCATGTCCTAATTGAGGCTGATTTACCGCCCAATACCGTTGATATCAGGCTGAGACAGGCACAAGAAATTATAGAAGAACTACTCAAACCCGTGGACGAGCCAAATGATTATATCAAAAGACAACAATTGCGTGAATTAGCAATGCTGAACTCAAATTTGAGAGAAGAAAGTCCTGGCCCCAGCGGCAGTGTTTCTCCTTTCAATTCAAGCGGGATGAAGCGGGCTAAAACTGGTCGCTGA

Coding sequence (CDS)

ATGGTAGGGAGAGTATCCAATTCTAAAGGAAGGCCTTTACGCCTCCATGAATACGCACAACAATACATTGCGTGGATTCCGAATAGTTTAAAGAAAGAGACCCAAGAAGTAATGTCAGGTTTGTATAATCCCAACTTCTCTCCTGCAAGAGCTGCTTCTCCTCAGATTAGAAGCAGCGCTGATGCTGACAGCCACTACTTGTCGGAGCTGTTGGCCGAGCATCACAAACTCGGACCCTTCATGCAAATCCTTCCTATTTGTAGCCGACTTTTGAATCAAGAGATTTTGCGGGTTTCTGGAATGATGTCCAACCAAGGTTTTAGTGACTTGGAGAGATTACGACAAAGAAGCCCTAGTCCAATGCCTTCTTCTAACCTCGTCTCAAATGCTTCTGGCGCAGGTTTTGGCGGCTGGAATGGACTTCCTCAGGAGCAAATGTTAAGTGGAAATCCTGGAATGACAATGGACTGGCAAGGTGCTCCTGCAAGCCCTAGTTCATTTACTGTAAAGAGGATTTTGCAGTTGGAAATTCCAGTGGACACGTACCCAAATTTCAATTTTGTTGGGCGGCTTCTTGGACCCAGAGGCAATTCTCTGAAACGGGTGGAAGCTACTACAGGATGCCGTGTGTATATTAGAGGAAAGGGGTCAATTAAAGATCCAGAGAAGGAAGAGAAACTCCGTGGAAGGCTTGGTTATGAACACCTGAATGAACCGCTGCATGTCCTAATTGAGGCTGATTTACCGCCCAATACCGTTGATATCAGGCTGAGACAGGCACAAGAAATTATAGAAGAACTACTCAAACCCGTGGACGAGCCAAATGATTATATCAAAAGACAACAATTGCGTGAATTAGCAATGCTGAACTCAAATTTGAGAGAAGAAAGTCCTGGCCCCAGCGGCAGTGTTTCTCCTTTCAATTCAAGCGGGATGAAGCGGGCTAAAACTGGTCGCTGA

Protein sequence

MVGRVSNSKGRPLRLHEYAQQYIAWIPNSLKKETQEVMSGLYNPNFSPARAASPQIRSSADADSHYLSELLAEHHKLGPFMQILPICSRLLNQEILRVSGMMSNQGFSDLERLRQRSPSPMPSSNLVSNASGAGFGGWNGLPQEQMLSGNPGMTMDWQGAPASPSSFTVKRILQLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPEKEEKLRGRLGYEHLNEPLHVLIEADLPPNTVDIRLRQAQEIIEELLKPVDEPNDYIKRQQLRELAMLNSNLREESPGPSGSVSPFNSSGMKRAKTGR

Homology

[Close]

BLAST of Carg12431 vs. NCBI nr
Match: KAG7017179.1 (KH domain-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 637.9 bits (1644), Expect = 4.7e-179
Identity = 319/319 (100.00%), Postives = 319/319 (100.00%), Query Frame = 0


Query: 1   MVGRVSNSKGRPLRLHEYAQQYIAWIPNSLKKETQEVMSGLYNPNFSPARAASPQIRSSA 60
           MVGRVSNSKGRPLRLHEYAQQYIAWIPNSLKKETQEVMSGLYNPNFSPARAASPQIRSSA
Sbjct: 1   MVGRVSNSKGRPLRLHEYAQQYIAWIPNSLKKETQEVMSGLYNPNFSPARAASPQIRSSA 60

Query: 61  DADSHYLSELLAEHHKLGPFMQILPICSRLLNQEILRVSGMMSNQGFSDLERLRQRSPSP 120
           DADSHYLSELLAEHHKLGPFMQILPICSRLLNQEILRVSGMMSNQGFSDLERLRQRSPSP
Sbjct: 61  DADSHYLSELLAEHHKLGPFMQILPICSRLLNQEILRVSGMMSNQGFSDLERLRQRSPSP 120

Query: 121 MPSSNLVSNASGAGFGGWNGLPQEQMLSGNPGMTMDWQGAPASPSSFTVKRILQLEIPVD 180
           MPSSNLVSNASGAGFGGWNGLPQEQMLSGNPGMTMDWQGAPASPSSFTVKRILQLEIPVD
Sbjct: 121 MPSSNLVSNASGAGFGGWNGLPQEQMLSGNPGMTMDWQGAPASPSSFTVKRILQLEIPVD 180

Query: 181 TYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPEKEEKLRGRLGYEHLNEPL 240
           TYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPEKEEKLRGRLGYEHLNEPL
Sbjct: 181 TYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPEKEEKLRGRLGYEHLNEPL 240

Query: 241 HVLIEADLPPNTVDIRLRQAQEIIEELLKPVDEPNDYIKRQQLRELAMLNSNLREESPGP 300
           HVLIEADLPPNTVDIRLRQAQEIIEELLKPVDEPNDYIKRQQLRELAMLNSNLREESPGP
Sbjct: 241 HVLIEADLPPNTVDIRLRQAQEIIEELLKPVDEPNDYIKRQQLRELAMLNSNLREESPGP 300

Query: 301 SGSVSPFNSSGMKRAKTGR 320
           SGSVSPFNSSGMKRAKTGR
Sbjct: 301 SGSVSPFNSSGMKRAKTGR 319

[Close]

BLAST of Carg12431 vs. NCBI nr
Match: KAG6580421.1 (KH domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 559.7 bits (1441), Expect = 1.6e-155
Identity = 281/282 (99.65%), Postives = 281/282 (99.65%), Query Frame = 0


Query: 38  MSGLYNPNFSPARAASPQIRSSADADSHYLSELLAEHHKLGPFMQILPICSRLLNQEILR 97
           MSGLYNPNFSPARAASPQIRSSADADSHYLSELLAEHHKLGPFMQILPICSRLLNQEILR
Sbjct: 1   MSGLYNPNFSPARAASPQIRSSADADSHYLSELLAEHHKLGPFMQILPICSRLLNQEILR 60

Query: 98  VSGMMSNQGFSDLERLRQRSPSPMPSSNLVSNASGAGFGGWNGLPQEQMLSGNPGMTMDW 157
           VSGMMSNQGFSD ERLRQRSPSPMPSSNLVSNASGAGFGGWNGLPQEQMLSGNPGMTMDW
Sbjct: 61  VSGMMSNQGFSDSERLRQRSPSPMPSSNLVSNASGAGFGGWNGLPQEQMLSGNPGMTMDW 120

Query: 158 QGAPASPSSFTVKRILQLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGS 217
           QGAPASPSSFTVKRILQLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGS
Sbjct: 121 QGAPASPSSFTVKRILQLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGS 180

Query: 218 IKDPEKEEKLRGRLGYEHLNEPLHVLIEADLPPNTVDIRLRQAQEIIEELLKPVDEPNDY 277
           IKDPEKEEKLRGRLGYEHLNEPLHVLIEADLPPNTVDIRLRQAQEIIEELLKPVDEPNDY
Sbjct: 181 IKDPEKEEKLRGRLGYEHLNEPLHVLIEADLPPNTVDIRLRQAQEIIEELLKPVDEPNDY 240

Query: 278 IKRQQLRELAMLNSNLREESPGPSGSVSPFNSSGMKRAKTGR 320
           IKRQQLRELAMLNSNLREESPGPSGSVSPFNSSGMKRAKTGR
Sbjct: 241 IKRQQLRELAMLNSNLREESPGPSGSVSPFNSSGMKRAKTGR 282

[Close]

BLAST of Carg12431 vs. NCBI nr
Match: XP_023527054.1 (KH domain-containing protein At3g08620-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 558.9 bits (1439), Expect = 2.8e-155
Identity = 280/282 (99.29%), Postives = 281/282 (99.65%), Query Frame = 0


Query: 38  MSGLYNPNFSPARAASPQIRSSADADSHYLSELLAEHHKLGPFMQILPICSRLLNQEILR 97
           MSGLYNPNFSPARAASPQIRSSADADSHYLSELLAEHHKLGPFMQILPICSRLLNQEILR
Sbjct: 1   MSGLYNPNFSPARAASPQIRSSADADSHYLSELLAEHHKLGPFMQILPICSRLLNQEILR 60

Query: 98  VSGMMSNQGFSDLERLRQRSPSPMPSSNLVSNASGAGFGGWNGLPQEQMLSGNPGMTMDW 157
           VSGMMSNQGFSDLERLRQRSPSPMPSSNLVSN SGAGFGGWNGLPQEQMLSGNPGMTMDW
Sbjct: 61  VSGMMSNQGFSDLERLRQRSPSPMPSSNLVSNVSGAGFGGWNGLPQEQMLSGNPGMTMDW 120

Query: 158 QGAPASPSSFTVKRILQLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGS 217
           QGAPASPSSFTVKRILQLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGS
Sbjct: 121 QGAPASPSSFTVKRILQLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGS 180

Query: 218 IKDPEKEEKLRGRLGYEHLNEPLHVLIEADLPPNTVDIRLRQAQEIIEELLKPVDEPNDY 277
           IKDPEKEE+LRGRLGYEHLNEPLHVLIEADLPPNTVDIRLRQAQEIIEELLKPVDEPNDY
Sbjct: 181 IKDPEKEEQLRGRLGYEHLNEPLHVLIEADLPPNTVDIRLRQAQEIIEELLKPVDEPNDY 240

Query: 278 IKRQQLRELAMLNSNLREESPGPSGSVSPFNSSGMKRAKTGR 320
           IKRQQLRELAMLNSNLREESPGPSGSVSPFNSSGMKRAKTGR
Sbjct: 241 IKRQQLRELAMLNSNLREESPGPSGSVSPFNSSGMKRAKTGR 282

[Close]

BLAST of Carg12431 vs. NCBI nr
Match: XP_022982601.1 (KH domain-containing protein At3g08620-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 554.7 bits (1428), Expect = 5.3e-154
Identity = 277/282 (98.23%), Postives = 279/282 (98.94%), Query Frame = 0


Query: 38  MSGLYNPNFSPARAASPQIRSSADADSHYLSELLAEHHKLGPFMQILPICSRLLNQEILR 97
           MSGLYNPNFSPARAASPQIRSSADADSHYLSELLAEHHKLGPFMQILPICSRLLNQEILR
Sbjct: 1   MSGLYNPNFSPARAASPQIRSSADADSHYLSELLAEHHKLGPFMQILPICSRLLNQEILR 60

Query: 98  VSGMMSNQGFSDLERLRQRSPSPMPSSNLVSNASGAGFGGWNGLPQEQMLSGNPGMTMDW 157
           +SGMMSNQGFSDLERLRQRSPSPMPSSNLVSN SGAGFGGWNGLPQEQMLSGNPGMTMDW
Sbjct: 61  ISGMMSNQGFSDLERLRQRSPSPMPSSNLVSNVSGAGFGGWNGLPQEQMLSGNPGMTMDW 120

Query: 158 QGAPASPSSFTVKRILQLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGS 217
           QGAPASPSSFTVKRILQLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGS
Sbjct: 121 QGAPASPSSFTVKRILQLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGS 180

Query: 218 IKDPEKEEKLRGRLGYEHLNEPLHVLIEADLPPNTVDIRLRQAQEIIEELLKPVDEPNDY 277
           IKDP+KEEKL GRLGYEHLNEPLHVLIEADLPPN VDIRLRQAQEIIEELLKPVDEPNDY
Sbjct: 181 IKDPDKEEKLHGRLGYEHLNEPLHVLIEADLPPNIVDIRLRQAQEIIEELLKPVDEPNDY 240

Query: 278 IKRQQLRELAMLNSNLREESPGPSGSVSPFNSSGMKRAKTGR 320
           IKRQQLRELAMLNSNLREESPGPSGSVSPFNSSGMKRAKTGR
Sbjct: 241 IKRQQLRELAMLNSNLREESPGPSGSVSPFNSSGMKRAKTGR 282

[Close]

BLAST of Carg12431 vs. NCBI nr
Match: XP_022935062.1 (KH domain-containing protein At3g08620-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 548.5 bits (1412), Expect = 3.8e-152
Identity = 276/282 (97.87%), Postives = 277/282 (98.23%), Query Frame = 0


Query: 38  MSGLYNPNFSPARAASPQIRSSADADSHYLSELLAEHHKLGPFMQILPICSRLLNQEILR 97
           MSGLYNPNFSPARAASPQIRSSADADSHYLSELLAEH KLGPFMQILPICSRLLNQEILR
Sbjct: 1   MSGLYNPNFSPARAASPQIRSSADADSHYLSELLAEHRKLGPFMQILPICSRLLNQEILR 60

Query: 98  VSGMMSNQGFSDLERLRQRSPSPMPSSNLVSNASGAGFGGWNGLPQEQMLSGNPGMTMDW 157
           VSGMMSNQGFSD ERL QR PSPMPSSNLVSNASGAGFGGWNGLPQEQMLSGNPGMTMDW
Sbjct: 61  VSGMMSNQGFSDSERLPQRRPSPMPSSNLVSNASGAGFGGWNGLPQEQMLSGNPGMTMDW 120

Query: 158 QGAPASPSSFTVKRILQLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGS 217
           QGAPASPSSFTVKRILQLEIPVDTYPNFNFVGRLLGPRGN LKRVEATTGCRVYIRGKGS
Sbjct: 121 QGAPASPSSFTVKRILQLEIPVDTYPNFNFVGRLLGPRGNFLKRVEATTGCRVYIRGKGS 180

Query: 218 IKDPEKEEKLRGRLGYEHLNEPLHVLIEADLPPNTVDIRLRQAQEIIEELLKPVDEPNDY 277
           IKDPEKEEKLRGRLGYEHLNEPLHVLIEADLPPNTVDIRLRQAQEIIEELLKPVDEPNDY
Sbjct: 181 IKDPEKEEKLRGRLGYEHLNEPLHVLIEADLPPNTVDIRLRQAQEIIEELLKPVDEPNDY 240

Query: 278 IKRQQLRELAMLNSNLREESPGPSGSVSPFNSSGMKRAKTGR 320
           IKRQQLRELA+LNSNLREESPGPSGSVSPFNSSGMKRAKTGR
Sbjct: 241 IKRQQLRELALLNSNLREESPGPSGSVSPFNSSGMKRAKTGR 282

[Close]

BLAST of Carg12431 vs. ExPASy Swiss-Prot
Match: Q8GYR4 (KH domain-containing protein At3g08620 OS=Arabidopsis thaliana OX=3702 GN=At3g08620 PE=2 SV=1)

HSP 1 Score: 451.1 bits (1159), Expect = 1.1e-125
Identity = 227/284 (79.93%), Postives = 253/284 (89.08%), Query Frame = 0


Query: 38  MSGLYN-PNFSPARAASPQIRS-SADADSHYLSELLAEHHKLGPFMQILPICSRLLNQEI 97
           MSGLYN  NFSP+RAASPQIR+ S+D DS Y+S+LLAEH KLGPFMQ+LPICSRLLNQEI
Sbjct: 1   MSGLYNYNNFSPSRAASPQIRTPSSDVDSQYISQLLAEHQKLGPFMQVLPICSRLLNQEI 60

Query: 98  LRVSGMMSNQGFSDLERLRQRSPSPMPSSNLVSNASGAGFGGWNGLPQEQMLSGNPGMTM 157
            R++GMM NQGF+D +RLR RSPSPM S NL+SN SG G GGWNGLP E+ + G  GM M
Sbjct: 61  FRITGMMPNQGFTDFDRLRHRSPSPMASPNLMSNVSGGGLGGWNGLPPER-IGGPHGMAM 120

Query: 158 DWQGAPASPSSFTVKRILQLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGK 217
           +WQGAPASPSS+ VKRIL+L++PVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGK
Sbjct: 121 EWQGAPASPSSYPVKRILRLDLPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGK 180

Query: 218 GSIKDPEKEEKLRGRLGYEHLNEPLHVLIEADLPPNTVDIRLRQAQEIIEELLKPVDEPN 277
           GSIKDPEKEEKL+G+ GYEHLNE LH+LIEADLP + VDI+LRQAQEIIEEL+KPVDE  
Sbjct: 181 GSIKDPEKEEKLKGKPGYEHLNEQLHILIEADLPIDIVDIKLRQAQEIIEELVKPVDESQ 240

Query: 278 DYIKRQQLRELAMLNSNLREESPGPSGSVSPFNSSGMKRAKTGR 320
           DYIKRQQLRELA+LNSNLRE SPGPSGSVSPFNS+ MKR KTGR
Sbjct: 241 DYIKRQQLRELALLNSNLRENSPGPSGSVSPFNSNAMKRPKTGR 283

[Close]

BLAST of Carg12431 vs. ExPASy Swiss-Prot
Match: Q9ZVI3 (KH domain-containing protein At2g38610 OS=Arabidopsis thaliana OX=3702 GN=At2g38610 PE=1 SV=1)

HSP 1 Score: 443.4 bits (1139), Expect = 2.2e-123
Identity = 235/287 (81.88%), Postives = 253/287 (88.15%), Query Frame = 0


Query: 38  MSGLYNPN--FSPARAASPQIRSSADAD-SHYLSELLAEHHKLGPFMQILPICSRLLNQE 97
           MSGLYN +  FSPARAASPQIRS+ + D S YL+ELLAEH KL PFMQ+LPICSRLLNQE
Sbjct: 1   MSGLYNNSSYFSPARAASPQIRSTPEIDSSQYLTELLAEHQKLTPFMQVLPICSRLLNQE 60

Query: 98  ILRVSGMMSNQGFSDLERLRQRSPSPMPSSNLVSNASGAGFGGWNGLPQEQMLSGNPGMT 157
           + RVSGMMSNQGF D +RLR RSPSPM SSNL+SN S  G GGWNGL QE+ LSG PGMT
Sbjct: 61  MFRVSGMMSNQGFGDFDRLRHRSPSPMASSNLMSNVSNTGLGGWNGLSQER-LSGTPGMT 120

Query: 158 MDWQGAPASPSSFTVKRILQLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRG 217
           MDWQGAP SPSS+TVKRIL+LEIPVD YPNFNFVGRLLGPRGNSLKRVEATTGCRV+IRG
Sbjct: 121 MDWQGAPGSPSSYTVKRILRLEIPVDNYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRG 180

Query: 218 KGSIKDPEKEEKLRGRLGYEHLNEPLHVLIEADLPPNTVDIRLRQAQEIIEELLKPVDEP 277
           KGSIKDPEKE+KLRGR GYEHLNE LH+LIEADLP + V+IRLRQAQEIIEELLKPVDE 
Sbjct: 181 KGSIKDPEKEDKLRGRPGYEHLNEQLHILIEADLPASIVEIRLRQAQEIIEELLKPVDES 240

Query: 278 NDYIKRQQLRELAMLNS-NLREESPGPS--GSVSPFNSSGMKRAKTG 319
            D+IKRQQLRELA+LNS NLREESPGPS  GSVSPFNSSG KR KTG
Sbjct: 241 QDFIKRQQLRELALLNSNNLREESPGPSGGGSVSPFNSSG-KRPKTG 285

[Close]

BLAST of Carg12431 vs. ExPASy Swiss-Prot
Match: Q75GR5 (KH domain-containing protein SPIN1 OS=Oryza sativa subsp. japonica OX=39947 GN=SPIN1 PE=1 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 1.1e-109
Identity = 203/284 (71.48%), Postives = 238/284 (83.80%), Query Frame = 0


Query: 38  MSGLYNPNFSPARAASPQIRSS-ADADSHYLSELLAEHHKLGPFMQILPICSRLLNQEIL 97
           MSGLY+P FSPAR  SPQIRS+  D DS YL+ELLAEH KLGPFMQ+LPICS+LL+QEI+
Sbjct: 1   MSGLYSPGFSPARNLSPQIRSNPTDVDSQYLAELLAEHQKLGPFMQVLPICSKLLSQEIM 60

Query: 98  RVSGMMSNQGFSDLERLRQRSPSPMPSSNLVSNASGAGFGGWNGLPQEQMLSGNP-GMTM 157
           RVS ++ N GF D +R R RSPSPM S N  SN SG GF  WNGL QE++  G P G +M
Sbjct: 61  RVSSIVHNHGFGDFDRHRFRSPSPMSSPNPRSNRSGNGFSPWNGLHQERL--GFPQGTSM 120

Query: 158 DWQGAPASPSSFTVKRILQLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGK 217
           DWQGAP SPSS  VK+IL+L++PVD+YPNFNFVGR+LGPRGNSLKRVEA+TGCRV+IRGK
Sbjct: 121 DWQGAPPSPSSHVVKKILRLDVPVDSYPNFNFVGRILGPRGNSLKRVEASTGCRVFIRGK 180

Query: 218 GSIKDPEKEEKLRGRLGYEHLNEPLHVLIEADLPPNTVDIRLRQAQEIIEELLKPVDEPN 277
           GSIKDP KE+KLRG+ GYEHL++PLH+LIEA+ P + +D RLR AQE+IEELLKPVDE  
Sbjct: 181 GSIKDPGKEDKLRGKPGYEHLSDPLHILIEAEFPASIIDARLRHAQEVIEELLKPVDESQ 240

Query: 278 DYIKRQQLRELAMLNSNLREESPGPSGSVSPFNSSGMKRAKTGR 320
           D+ KRQQLRELAMLNS LRE+SP P GSVSPF++ GMKRAKTG+
Sbjct: 241 DFYKRQQLRELAMLNSTLREDSPHP-GSVSPFSNGGMKRAKTGQ 281

[Close]

BLAST of Carg12431 vs. ExPASy Swiss-Prot
Match: Q0WLR1 (KH domain-containing protein At4g26480 OS=Arabidopsis thaliana OX=3702 GN=At4g26480 PE=2 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 6.6e-75
Identity = 153/276 (55.43%), Postives = 195/276 (70.65%), Query Frame = 0


Query: 43  NPNFSPARAASPQIRSSADADSHYLSELLAEHHKLGPFMQILPICSRLLNQEILRVSGMM 102
           +PNFS    + P   S       YLSELLAE HKL PF+ +LP   RL+NQEILRV+ ++
Sbjct: 41  SPNFSGGLRSQP---SFLVEQEKYLSELLAERHKLTPFLPVLPHVCRLMNQEILRVTTLL 100

Query: 103 SNQGFSDLERLRQRSPSPMPSSNLVSNASGAGFGGW-NGLPQEQMLSGNPGMTMDWQGAP 162
            N     L + R   PSP+ S  +  N S A   GW +  P E+ +S +P    +W  +P
Sbjct: 101 ENA----LSQSRFDHPSPLASGGIFQN-SRADMNGWASQFPSERSVSSSP--APNWLNSP 160

Query: 163 ASPSSFTVKRILQLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDP 222
            S S   VKR ++++IPVD YPN+NFVGRLLGPRGNSLKRVEA+T CRV IRG+GSIKDP
Sbjct: 161 GSSSGLIVKRTIRVDIPVDKYPNYNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDP 220

Query: 223 EKEEKLRGRLGYEHLNEPLHVLIEADLPPNTVDIRLRQAQEIIEELLKPVDEPNDYIKRQ 282
            KE+ +RG+ GYEHLNEPLH+L+EA+LP   VD RL QA+EI+++LL PV+E +D+ K+Q
Sbjct: 221 IKEDMMRGKPGYEHLNEPLHILVEAELPIEIVDARLMQAREILDDLLTPVEETHDFYKKQ 280

Query: 283 QLRELAMLNSNLREESPGPSGSVSPFNSSGMKRAKT 318
           QLRELA+LN +LREE    SGS+SP+NS GMKRAKT
Sbjct: 281 QLRELALLNGSLREEGSPMSGSISPYNSLGMKRAKT 306

[Close]

BLAST of Carg12431 vs. ExPASy Swiss-Prot
Match: Q9FKT4 (KH domain-containing protein At5g56140 OS=Arabidopsis thaliana OX=3702 GN=At5g56140 PE=2 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 1.6e-73
Identity = 148/253 (58.50%), Postives = 184/253 (72.73%), Query Frame = 0


Query: 66  YLSELLAEHHKLGPFMQILPICSRLLNQEILRVSGMMSNQGFSDLERLRQRSPSPMPSSN 125
           YLSELLAE HKL PF+ +LP   RLLNQEILRV+ ++ N   + L +     PSP+ S  
Sbjct: 65  YLSELLAERHKLTPFLPVLPHAFRLLNQEILRVTTLLENA--TVLSQSGLDHPSPLASGG 124

Query: 126 LVSNASGAGFGGW-NGLPQEQMLSGNPGMTMDWQGAPASPSSFTVKRILQLEIPVDTYPN 185
           +  NA  A   GW +  P E+ +  +PG   +W  +P S S    KR ++++IPVD YPN
Sbjct: 125 IFQNAR-ADMNGWASQFPSERSVPSSPG--PNWLNSPGSSSGLIAKRTIRVDIPVDNYPN 184

Query: 186 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPEKEEKLRGRLGYEHLNEPLHVLI 245
           FNFVGRLLGPRGNSLKRVEA+T CRV IRG+GSIKDP KEE +RG+ GYEHLNEPLH+L+
Sbjct: 185 FNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIKEEMMRGKPGYEHLNEPLHILV 244

Query: 246 EADLPPNTVDIRLRQAQEIIEELLKPVDEPNDYIKRQQLRELAMLNSNLREESPGPSGSV 305
           EA+LP   VD RL QA+EI+++LL P++E +D  K+QQLRELA+LN  LREE    SGSV
Sbjct: 245 EAELPIEIVDARLMQAREILDDLLTPMEETHDMYKKQQLRELALLNGTLREEGSPMSGSV 304

Query: 306 SPFNSSGMKRAKT 318
           SP+NS GMKRAKT
Sbjct: 305 SPYNSLGMKRAKT 312

[Close]

BLAST of Carg12431 vs. ExPASy TrEMBL
Match: A0A6J1IZS3 (KH domain-containing protein At3g08620-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481428 PE=4 SV=1)

HSP 1 Score: 554.7 bits (1428), Expect = 2.6e-154
Identity = 277/282 (98.23%), Postives = 279/282 (98.94%), Query Frame = 0


Query: 38  MSGLYNPNFSPARAASPQIRSSADADSHYLSELLAEHHKLGPFMQILPICSRLLNQEILR 97
           MSGLYNPNFSPARAASPQIRSSADADSHYLSELLAEHHKLGPFMQILPICSRLLNQEILR
Sbjct: 1   MSGLYNPNFSPARAASPQIRSSADADSHYLSELLAEHHKLGPFMQILPICSRLLNQEILR 60

Query: 98  VSGMMSNQGFSDLERLRQRSPSPMPSSNLVSNASGAGFGGWNGLPQEQMLSGNPGMTMDW 157
           +SGMMSNQGFSDLERLRQRSPSPMPSSNLVSN SGAGFGGWNGLPQEQMLSGNPGMTMDW
Sbjct: 61  ISGMMSNQGFSDLERLRQRSPSPMPSSNLVSNVSGAGFGGWNGLPQEQMLSGNPGMTMDW 120

Query: 158 QGAPASPSSFTVKRILQLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGS 217
           QGAPASPSSFTVKRILQLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGS
Sbjct: 121 QGAPASPSSFTVKRILQLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGS 180

Query: 218 IKDPEKEEKLRGRLGYEHLNEPLHVLIEADLPPNTVDIRLRQAQEIIEELLKPVDEPNDY 277
           IKDP+KEEKL GRLGYEHLNEPLHVLIEADLPPN VDIRLRQAQEIIEELLKPVDEPNDY
Sbjct: 181 IKDPDKEEKLHGRLGYEHLNEPLHVLIEADLPPNIVDIRLRQAQEIIEELLKPVDEPNDY 240

Query: 278 IKRQQLRELAMLNSNLREESPGPSGSVSPFNSSGMKRAKTGR 320
           IKRQQLRELAMLNSNLREESPGPSGSVSPFNSSGMKRAKTGR
Sbjct: 241 IKRQQLRELAMLNSNLREESPGPSGSVSPFNSSGMKRAKTGR 282

[Close]

BLAST of Carg12431 vs. ExPASy TrEMBL
Match: A0A6J1F4J5 (KH domain-containing protein At3g08620-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111442045 PE=4 SV=1)

HSP 1 Score: 548.5 bits (1412), Expect = 1.8e-152
Identity = 276/282 (97.87%), Postives = 277/282 (98.23%), Query Frame = 0


Query: 38  MSGLYNPNFSPARAASPQIRSSADADSHYLSELLAEHHKLGPFMQILPICSRLLNQEILR 97
           MSGLYNPNFSPARAASPQIRSSADADSHYLSELLAEH KLGPFMQILPICSRLLNQEILR
Sbjct: 1   MSGLYNPNFSPARAASPQIRSSADADSHYLSELLAEHRKLGPFMQILPICSRLLNQEILR 60

Query: 98  VSGMMSNQGFSDLERLRQRSPSPMPSSNLVSNASGAGFGGWNGLPQEQMLSGNPGMTMDW 157
           VSGMMSNQGFSD ERL QR PSPMPSSNLVSNASGAGFGGWNGLPQEQMLSGNPGMTMDW
Sbjct: 61  VSGMMSNQGFSDSERLPQRRPSPMPSSNLVSNASGAGFGGWNGLPQEQMLSGNPGMTMDW 120

Query: 158 QGAPASPSSFTVKRILQLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGS 217
           QGAPASPSSFTVKRILQLEIPVDTYPNFNFVGRLLGPRGN LKRVEATTGCRVYIRGKGS
Sbjct: 121 QGAPASPSSFTVKRILQLEIPVDTYPNFNFVGRLLGPRGNFLKRVEATTGCRVYIRGKGS 180

Query: 218 IKDPEKEEKLRGRLGYEHLNEPLHVLIEADLPPNTVDIRLRQAQEIIEELLKPVDEPNDY 277
           IKDPEKEEKLRGRLGYEHLNEPLHVLIEADLPPNTVDIRLRQAQEIIEELLKPVDEPNDY
Sbjct: 181 IKDPEKEEKLRGRLGYEHLNEPLHVLIEADLPPNTVDIRLRQAQEIIEELLKPVDEPNDY 240

Query: 278 IKRQQLRELAMLNSNLREESPGPSGSVSPFNSSGMKRAKTGR 320
           IKRQQLRELA+LNSNLREESPGPSGSVSPFNSSGMKRAKTGR
Sbjct: 241 IKRQQLRELALLNSNLREESPGPSGSVSPFNSSGMKRAKTGR 282

[Close]

BLAST of Carg12431 vs. ExPASy TrEMBL
Match: A0A6J1DU72 (KH domain-containing protein At3g08620-like OS=Momordica charantia OX=3673 GN=LOC111024049 PE=4 SV=1)

HSP 1 Score: 525.8 bits (1353), Expect = 1.3e-145
Identity = 265/282 (93.97%), Postives = 269/282 (95.39%), Query Frame = 0


Query: 38  MSGLYNPNFSPARAASPQIRSSADADSHYLSELLAEHHKLGPFMQILPICSRLLNQEILR 97
           MSGLYNPNFSPARAASPQIRSSADADS YLSELLAEH KLGPFMQILPICSRLLNQEILR
Sbjct: 1   MSGLYNPNFSPARAASPQIRSSADADSQYLSELLAEHQKLGPFMQILPICSRLLNQEILR 60

Query: 98  VSGMMSNQGFSDLERLRQRSPSPMPSSNLVSNASGAGFGGWNGLPQEQMLSGNPGMTMDW 157
           VSGMMSNQGFSD ERLR RSPSPM SSNLVSN SG GFGGWNGLPQE  LSG+ GMTMDW
Sbjct: 61  VSGMMSNQGFSDFERLRHRSPSPMASSNLVSNISGTGFGGWNGLPQEPRLSGSSGMTMDW 120

Query: 158 QGAPASPSSFTVKRILQLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGS 217
           QGAPASPSSFTVKRIL+LEIPV+TYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGS
Sbjct: 121 QGAPASPSSFTVKRILRLEIPVETYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGS 180

Query: 218 IKDPEKEEKLRGRLGYEHLNEPLHVLIEADLPPNTVDIRLRQAQEIIEELLKPVDEPNDY 277
           IKDPEKEEKLRGRLGYEHLNEPLHVLIEADLP N +DIRLRQAQEIIEELLKPVDEPNDY
Sbjct: 181 IKDPEKEEKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPNDY 240

Query: 278 IKRQQLRELAMLNSNLREESPGPSGSVSPFNSSGMKRAKTGR 320
           IKRQQLRELAMLNSN REESPGPSGSVSPFNSSGMKRAKTGR
Sbjct: 241 IKRQQLRELAMLNSNFREESPGPSGSVSPFNSSGMKRAKTGR 282

[Close]

BLAST of Carg12431 vs. ExPASy TrEMBL
Match: A0A6J1I3I7 (KH domain-containing protein At2g38610-like OS=Cucurbita maxima OX=3661 GN=LOC111470213 PE=4 SV=1)

HSP 1 Score: 513.8 bits (1322), Expect = 5.0e-142
Identity = 259/282 (91.84%), Postives = 266/282 (94.33%), Query Frame = 0


Query: 38  MSGLYNPNFSPARAASPQIRSSADADSHYLSELLAEHHKLGPFMQILPICSRLLNQEILR 97
           MSGLYNPNFSPARAASPQIR+SADADS YLSELLAEH KLGPFMQILPIC RLLNQEILR
Sbjct: 1   MSGLYNPNFSPARAASPQIRTSADADSQYLSELLAEHQKLGPFMQILPICKRLLNQEILR 60

Query: 98  VSGMMSNQGFSDLERLRQRSPSPMPSSNLVSNASGAGFGGWNGLPQEQMLSGNPGMTMDW 157
           VSGMMSNQGFSD +RLR RSPSPM SSNL+SN SG GFG WNGLPQE  LSGNPG TMDW
Sbjct: 61  VSGMMSNQGFSDFDRLRHRSPSPMASSNLMSNISGTGFGSWNGLPQEPRLSGNPGTTMDW 120

Query: 158 QGAPASPSSFTVKRILQLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGS 217
           QGAPASPSSFTVK+IL+LEIPV+TYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGS
Sbjct: 121 QGAPASPSSFTVKKILRLEIPVETYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGS 180

Query: 218 IKDPEKEEKLRGRLGYEHLNEPLHVLIEADLPPNTVDIRLRQAQEIIEELLKPVDEPNDY 277
           IKDPEKEEKLRGRLGYEHLNEPLHVLIEADLP N +DIRLRQAQEIIEELLKPVDEPNDY
Sbjct: 181 IKDPEKEEKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPNDY 240

Query: 278 IKRQQLRELAMLNSNLREESPGPS-GSVSPFNSSGMKRAKTG 319
           IKRQQLRELAMLNSN REESPGPS GSVSPFNSSGMKRAKTG
Sbjct: 241 IKRQQLRELAMLNSNFREESPGPSGGSVSPFNSSGMKRAKTG 282

[Close]

BLAST of Carg12431 vs. ExPASy TrEMBL
Match: A0A6J1FU50 (KH domain-containing protein At2g38610 OS=Cucurbita moschata OX=3662 GN=LOC111446905 PE=4 SV=1)

HSP 1 Score: 513.8 bits (1322), Expect = 5.0e-142
Identity = 259/282 (91.84%), Postives = 266/282 (94.33%), Query Frame = 0


Query: 38  MSGLYNPNFSPARAASPQIRSSADADSHYLSELLAEHHKLGPFMQILPICSRLLNQEILR 97
           MSGLYNPNFSPARAASPQIR+SADADS YLSELLAEH KLGPFMQILPIC RLLNQEILR
Sbjct: 1   MSGLYNPNFSPARAASPQIRTSADADSQYLSELLAEHQKLGPFMQILPICKRLLNQEILR 60

Query: 98  VSGMMSNQGFSDLERLRQRSPSPMPSSNLVSNASGAGFGGWNGLPQEQMLSGNPGMTMDW 157
           VSGMMSNQGFSD +RLR RSPSPM SSNL+SN SG GFG WNGLPQE  LSGNPG TMDW
Sbjct: 61  VSGMMSNQGFSDFDRLRHRSPSPMASSNLMSNISGTGFGSWNGLPQEPRLSGNPGTTMDW 120

Query: 158 QGAPASPSSFTVKRILQLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGS 217
           QGAPASPSSFTVK+IL+LEIPV+TYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGS
Sbjct: 121 QGAPASPSSFTVKKILRLEIPVETYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGS 180

Query: 218 IKDPEKEEKLRGRLGYEHLNEPLHVLIEADLPPNTVDIRLRQAQEIIEELLKPVDEPNDY 277
           IKDPEKEEKLRGRLGYEHLNEPLHVLIEADLP N +DIRLRQAQEIIEELLKPVDEPNDY
Sbjct: 181 IKDPEKEEKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPNDY 240

Query: 278 IKRQQLRELAMLNSNLREESPGPS-GSVSPFNSSGMKRAKTG 319
           IKRQQLRELAMLNSN REESPGPS GSVSPFNSSGMKRAKTG
Sbjct: 241 IKRQQLRELAMLNSNFREESPGPSGGSVSPFNSSGMKRAKTG 282

[Close]

BLAST of Carg12431 vs. TAIR 10
Match: AT3G08620.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 451.1 bits (1159), Expect = 7.7e-127
Identity = 227/284 (79.93%), Postives = 253/284 (89.08%), Query Frame = 0


Query: 38  MSGLYN-PNFSPARAASPQIRS-SADADSHYLSELLAEHHKLGPFMQILPICSRLLNQEI 97
           MSGLYN  NFSP+RAASPQIR+ S+D DS Y+S+LLAEH KLGPFMQ+LPICSRLLNQEI
Sbjct: 1   MSGLYNYNNFSPSRAASPQIRTPSSDVDSQYISQLLAEHQKLGPFMQVLPICSRLLNQEI 60

Query: 98  LRVSGMMSNQGFSDLERLRQRSPSPMPSSNLVSNASGAGFGGWNGLPQEQMLSGNPGMTM 157
            R++GMM NQGF+D +RLR RSPSPM S NL+SN SG G GGWNGLP E+ + G  GM M
Sbjct: 61  FRITGMMPNQGFTDFDRLRHRSPSPMASPNLMSNVSGGGLGGWNGLPPER-IGGPHGMAM 120

Query: 158 DWQGAPASPSSFTVKRILQLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGK 217
           +WQGAPASPSS+ VKRIL+L++PVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGK
Sbjct: 121 EWQGAPASPSSYPVKRILRLDLPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGK 180

Query: 218 GSIKDPEKEEKLRGRLGYEHLNEPLHVLIEADLPPNTVDIRLRQAQEIIEELLKPVDEPN 277
           GSIKDPEKEEKL+G+ GYEHLNE LH+LIEADLP + VDI+LRQAQEIIEEL+KPVDE  
Sbjct: 181 GSIKDPEKEEKLKGKPGYEHLNEQLHILIEADLPIDIVDIKLRQAQEIIEELVKPVDESQ 240

Query: 278 DYIKRQQLRELAMLNSNLREESPGPSGSVSPFNSSGMKRAKTGR 320
           DYIKRQQLRELA+LNSNLRE SPGPSGSVSPFNS+ MKR KTGR
Sbjct: 241 DYIKRQQLRELALLNSNLRENSPGPSGSVSPFNSNAMKRPKTGR 283

[Close]

BLAST of Carg12431 vs. TAIR 10
Match: AT2G38610.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 443.4 bits (1139), Expect = 1.6e-124
Identity = 235/287 (81.88%), Postives = 253/287 (88.15%), Query Frame = 0


Query: 38  MSGLYNPN--FSPARAASPQIRSSADAD-SHYLSELLAEHHKLGPFMQILPICSRLLNQE 97
           MSGLYN +  FSPARAASPQIRS+ + D S YL+ELLAEH KL PFMQ+LPICSRLLNQE
Sbjct: 1   MSGLYNNSSYFSPARAASPQIRSTPEIDSSQYLTELLAEHQKLTPFMQVLPICSRLLNQE 60

Query: 98  ILRVSGMMSNQGFSDLERLRQRSPSPMPSSNLVSNASGAGFGGWNGLPQEQMLSGNPGMT 157
           + RVSGMMSNQGF D +RLR RSPSPM SSNL+SN S  G GGWNGL QE+ LSG PGMT
Sbjct: 61  MFRVSGMMSNQGFGDFDRLRHRSPSPMASSNLMSNVSNTGLGGWNGLSQER-LSGTPGMT 120

Query: 158 MDWQGAPASPSSFTVKRILQLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRG 217
           MDWQGAP SPSS+TVKRIL+LEIPVD YPNFNFVGRLLGPRGNSLKRVEATTGCRV+IRG
Sbjct: 121 MDWQGAPGSPSSYTVKRILRLEIPVDNYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRG 180

Query: 218 KGSIKDPEKEEKLRGRLGYEHLNEPLHVLIEADLPPNTVDIRLRQAQEIIEELLKPVDEP 277
           KGSIKDPEKE+KLRGR GYEHLNE LH+LIEADLP + V+IRLRQAQEIIEELLKPVDE 
Sbjct: 181 KGSIKDPEKEDKLRGRPGYEHLNEQLHILIEADLPASIVEIRLRQAQEIIEELLKPVDES 240

Query: 278 NDYIKRQQLRELAMLNS-NLREESPGPS--GSVSPFNSSGMKRAKTG 319
            D+IKRQQLRELA+LNS NLREESPGPS  GSVSPFNSSG KR KTG
Sbjct: 241 QDFIKRQQLRELALLNSNNLREESPGPSGGGSVSPFNSSG-KRPKTG 285

[Close]

BLAST of Carg12431 vs. TAIR 10
Match: AT2G38610.2 (RNA-binding KH domain-containing protein )

HSP 1 Score: 443.4 bits (1139), Expect = 1.6e-124
Identity = 235/287 (81.88%), Postives = 253/287 (88.15%), Query Frame = 0


Query: 38  MSGLYNPN--FSPARAASPQIRSSADAD-SHYLSELLAEHHKLGPFMQILPICSRLLNQE 97
           MSGLYN +  FSPARAASPQIRS+ + D S YL+ELLAEH KL PFMQ+LPICSRLLNQE
Sbjct: 1   MSGLYNNSSYFSPARAASPQIRSTPEIDSSQYLTELLAEHQKLTPFMQVLPICSRLLNQE 60

Query: 98  ILRVSGMMSNQGFSDLERLRQRSPSPMPSSNLVSNASGAGFGGWNGLPQEQMLSGNPGMT 157
           + RVSGMMSNQGF D +RLR RSPSPM SSNL+SN S  G GGWNGL QE+ LSG PGMT
Sbjct: 61  MFRVSGMMSNQGFGDFDRLRHRSPSPMASSNLMSNVSNTGLGGWNGLSQER-LSGTPGMT 120

Query: 158 MDWQGAPASPSSFTVKRILQLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRG 217
           MDWQGAP SPSS+TVKRIL+LEIPVD YPNFNFVGRLLGPRGNSLKRVEATTGCRV+IRG
Sbjct: 121 MDWQGAPGSPSSYTVKRILRLEIPVDNYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRG 180

Query: 218 KGSIKDPEKEEKLRGRLGYEHLNEPLHVLIEADLPPNTVDIRLRQAQEIIEELLKPVDEP 277
           KGSIKDPEKE+KLRGR GYEHLNE LH+LIEADLP + V+IRLRQAQEIIEELLKPVDE 
Sbjct: 181 KGSIKDPEKEDKLRGRPGYEHLNEQLHILIEADLPASIVEIRLRQAQEIIEELLKPVDES 240

Query: 278 NDYIKRQQLRELAMLNS-NLREESPGPS--GSVSPFNSSGMKRAKTG 319
            D+IKRQQLRELA+LNS NLREESPGPS  GSVSPFNSSG KR KTG
Sbjct: 241 QDFIKRQQLRELALLNSNNLREESPGPSGGGSVSPFNSSG-KRPKTG 285

[Close]

BLAST of Carg12431 vs. TAIR 10
Match: AT4G26480.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 282.3 bits (721), Expect = 4.7e-76
Identity = 153/276 (55.43%), Postives = 195/276 (70.65%), Query Frame = 0


Query: 43  NPNFSPARAASPQIRSSADADSHYLSELLAEHHKLGPFMQILPICSRLLNQEILRVSGMM 102
           +PNFS    + P   S       YLSELLAE HKL PF+ +LP   RL+NQEILRV+ ++
Sbjct: 41  SPNFSGGLRSQP---SFLVEQEKYLSELLAERHKLTPFLPVLPHVCRLMNQEILRVTTLL 100

Query: 103 SNQGFSDLERLRQRSPSPMPSSNLVSNASGAGFGGW-NGLPQEQMLSGNPGMTMDWQGAP 162
            N     L + R   PSP+ S  +  N S A   GW +  P E+ +S +P    +W  +P
Sbjct: 101 ENA----LSQSRFDHPSPLASGGIFQN-SRADMNGWASQFPSERSVSSSP--APNWLNSP 160

Query: 163 ASPSSFTVKRILQLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDP 222
            S S   VKR ++++IPVD YPN+NFVGRLLGPRGNSLKRVEA+T CRV IRG+GSIKDP
Sbjct: 161 GSSSGLIVKRTIRVDIPVDKYPNYNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDP 220

Query: 223 EKEEKLRGRLGYEHLNEPLHVLIEADLPPNTVDIRLRQAQEIIEELLKPVDEPNDYIKRQ 282
            KE+ +RG+ GYEHLNEPLH+L+EA+LP   VD RL QA+EI+++LL PV+E +D+ K+Q
Sbjct: 221 IKEDMMRGKPGYEHLNEPLHILVEAELPIEIVDARLMQAREILDDLLTPVEETHDFYKKQ 280

Query: 283 QLRELAMLNSNLREESPGPSGSVSPFNSSGMKRAKT 318
           QLRELA+LN +LREE    SGS+SP+NS GMKRAKT
Sbjct: 281 QLRELALLNGSLREEGSPMSGSISPYNSLGMKRAKT 306

[Close]

BLAST of Carg12431 vs. TAIR 10
Match: AT5G56140.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 277.7 bits (709), Expect = 1.2e-74
Identity = 148/253 (58.50%), Postives = 184/253 (72.73%), Query Frame = 0


Query: 66  YLSELLAEHHKLGPFMQILPICSRLLNQEILRVSGMMSNQGFSDLERLRQRSPSPMPSSN 125
           YLSELLAE HKL PF+ +LP   RLLNQEILRV+ ++ N   + L +     PSP+ S  
Sbjct: 65  YLSELLAERHKLTPFLPVLPHAFRLLNQEILRVTTLLENA--TVLSQSGLDHPSPLASGG 124

Query: 126 LVSNASGAGFGGW-NGLPQEQMLSGNPGMTMDWQGAPASPSSFTVKRILQLEIPVDTYPN 185
           +  NA  A   GW +  P E+ +  +PG   +W  +P S S    KR ++++IPVD YPN
Sbjct: 125 IFQNAR-ADMNGWASQFPSERSVPSSPG--PNWLNSPGSSSGLIAKRTIRVDIPVDNYPN 184

Query: 186 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPEKEEKLRGRLGYEHLNEPLHVLI 245
           FNFVGRLLGPRGNSLKRVEA+T CRV IRG+GSIKDP KEE +RG+ GYEHLNEPLH+L+
Sbjct: 185 FNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIKEEMMRGKPGYEHLNEPLHILV 244

Query: 246 EADLPPNTVDIRLRQAQEIIEELLKPVDEPNDYIKRQQLRELAMLNSNLREESPGPSGSV 305
           EA+LP   VD RL QA+EI+++LL P++E +D  K+QQLRELA+LN  LREE    SGSV
Sbjct: 245 EAELPIEIVDARLMQAREILDDLLTPMEETHDMYKKQQLRELALLNGTLREEGSPMSGSV 304

Query: 306 SPFNSSGMKRAKT 318
           SP+NS GMKRAKT
Sbjct: 305 SPYNSLGMKRAKT 312

The following BLAST results are available for this feature:

BLAST of Carg12431 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7017179.1	4.7e-179	100.00	KH domain-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
KAG6580421.1	1.6e-155	99.65	KH domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023527054.1	2.8e-155	99.29	KH domain-containing protein At3g08620-like isoform X1 [Cucurbita pepo subsp. pe...	[more]
XP_022982601.1	5.3e-154	98.23	KH domain-containing protein At3g08620-like isoform X1 [Cucurbita maxima]	[more]
XP_022935062.1	3.8e-152	97.87	KH domain-containing protein At3g08620-like isoform X1 [Cucurbita moschata]	[more]

BLAST of Carg12431 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GYR4	1.1e-125	79.93	KH domain-containing protein At3g08620 OS=Arabidopsis thaliana OX=3702 GN=At3g08...	[more]
Q9ZVI3	2.2e-123	81.88	KH domain-containing protein At2g38610 OS=Arabidopsis thaliana OX=3702 GN=At2g38...	[more]
Q75GR5	1.1e-109	71.48	KH domain-containing protein SPIN1 OS=Oryza sativa subsp. japonica OX=39947 GN=S...	[more]
Q0WLR1	6.6e-75	55.43	KH domain-containing protein At4g26480 OS=Arabidopsis thaliana OX=3702 GN=At4g26...	[more]
Q9FKT4	1.6e-73	58.50	KH domain-containing protein At5g56140 OS=Arabidopsis thaliana OX=3702 GN=At5g56...	[more]

BLAST of Carg12431 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IZS3	2.6e-154	98.23	KH domain-containing protein At3g08620-like isoform X1 OS=Cucurbita maxima OX=36...	[more]
A0A6J1F4J5	1.8e-152	97.87	KH domain-containing protein At3g08620-like isoform X1 OS=Cucurbita moschata OX=...	[more]
A0A6J1DU72	1.3e-145	93.97	KH domain-containing protein At3g08620-like OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A6J1I3I7	5.0e-142	91.84	KH domain-containing protein At2g38610-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1FU50	5.0e-142	91.84	KH domain-containing protein At2g38610 OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]

BLAST of Carg12431 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G08620.1	7.7e-127	79.93	RNA-binding KH domain-containing protein	[more]
AT2G38610.1	1.6e-124	81.88	RNA-binding KH domain-containing protein	[more]
AT2G38610.2	1.6e-124	81.88	RNA-binding KH domain-containing protein	[more]
AT4G26480.1	4.7e-76	55.43	RNA-binding KH domain-containing protein	[more]
AT5G56140.1	1.2e-74	58.50	RNA-binding KH domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004087	K Homology domain	SMART	SM00322	kh_6	coord: 169..269 e-value: 1.3E-6 score: 38.0
IPR036612	K Homology domain, type 1 superfamily	GENE3D	3.30.1370.10	K Homology domain, type 1	coord: 56..300 e-value: 2.3E-69 score: 235.5
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 176..294
IPR004088	K Homology domain, type 1	PFAM	PF00013	KH_1	coord: 186..224 e-value: 3.2E-5 score: 23.7
IPR032377	STAR protein, homodimerisation region	PFAM	PF16544	STAR_dimer	coord: 62..109 e-value: 1.5E-12 score: 47.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 294..319
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 293..319
None	No IPR available	PANTHER	PTHR11208:SF114	STAR PROTEIN, HOMODIMERIZATION REGION-RELATED	coord: 39..319
None	No IPR available	PROSITE	PS50084	KH_TYPE_1	coord: 186..243 score: 8.428877
None	No IPR available	CDD	cd02395	SF1_like-KH	coord: 175..294 e-value: 2.40734E-53 score: 168.962
IPR045071	KH domain-containing BBP-like	PANTHER	PTHR11208	RNA-BINDING PROTEIN RELATED	coord: 39..319

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12431-RA	Carg12431-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048024	regulation of mRNA splicing, via spliceosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding