Carg12414 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg12414
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	DExH-box ATP-dependent RNA helicase DExH11
Location	Carg_Chr01: 3448716 .. 3453738 (+)
RNA-Seq Expression	Carg12414
Synteny	Carg12414

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATTTAGATGCTGCAAGCACAGCCCTTGAACGTTTGAGTACCGCCGAAGCAGTGAAGTACCTGCAGTCACTGTCGGACGTTGGCTAAGTATCAAAACGGGGACGGATTGTGCCGCGCACTCGGCTCGATACGTTCCTTCCTCTGGAACCCGCCCAAATCTTCAGAATCTAATTTAGAGATAATTGTGCGTGGAAATTCAGAACCGCCGGGAAGAGTACGGAAGTTCGGTTGCAGAACTCTGATATGAAATGGATCCAATTGAAGCAACAAAAGAGCTTTCGTTTCGCGTCGGTTTTTCCGGCCACAGCGGCCATCTCAGAGTCGAGCCTCTTTCAACTGTGGAGCGCTCCAGCCCTGTTAGATCGCTCCCGGATTTCATACTTGTAAGTAATTTTTTTTTCGTAGTGTAGCCCTTGTGTGGAAGCTTACAGTTAGTATGTGGCTGCATGCTGTTCATGGTTTTTTGCATTTCCGTTTAAAATTACTTTTAGGGTTTATCAATGTTATACCATTCTTCAGTTTTGAGTATTCGGTGTTTAGAATTTTTTTAATTTCGTGCTTATTGCAAGCCTGGTGTCACAATTTCACATAGCAGTTGAGGAGAAGATGATCTTCAGTTCTTATTGCATAAAGGTTGAGAATGGGATTGAAGCAGGGCTCATACTCCCTTTCTTCTGTTTTTATATTAGCTATTTCTCAAATTTTCTCTGCGGTGGAATTTCTTAATTTCTTAAGAATGTTTCCTGTCCCATGTATTTGTGTTTCTTTCCCTTCTCAAAGAAAGAGATGTTTCTTGCTAACCTAATTATTTGTAATTTTCCTTGTACCTGAAGGTTTGAATTCTTATCCTCACACTTGTAATGTTATTTTCTAAAAAATGCGACATTGCTTAATTACCACTAAGCATCAATTATGCACTGTGTTTATTTTTTATTTTTGGTTCAAATTCAGCCTCCCGCATTTCCTAAGGAAACTCCCGAAACAATAAAGGGCTACATAGAAGAGACTTATCTCCAGCCGAGGTTAGACCCTGATGAATTTTCCCCTGAAAAAGTGGGAAGACAATGGGATTTTGATTGGTTTGAAATGGCAAAAGTATCTTTGGATCCATCACAACCAAGATCAGTTGTGGTTCCCACTTGGGTGTTGCCATTTGAACGACCAAAGAAGGACGGAACAACTGGAGGGACATGGGAACCTTGTTCTGTGCAGGTACTGCTTGATTGTTCAATCTGCCATGCATGAAAAATGTTGGGTTAGCTATACTGAATTAAGATTGCTGCGATTATACATTTCATGCATTTACGTTAAGTCAGTGATCTCGGCTATATTTTCTCATGACTGATTTTCCAATTGGACTAATTTCACTTTCAGGTGGATGTTTCTGAGTTAAATGTGGAAGCTCAAGAATCTGGTTCACAGCCACGCGTGCCAGGACCGGCAAAAGATTTTGTAAGGGGAAGCATAAATAATCGTCCTTTTCGACCTGGTGGTTTGGATGATTCCCAATCTGTTGATAGAATTCTTCCTGATGCAGCTTCAAATGGTGAGTGGGTTCAAGAAATTCTAAATGGTGGTCGTGCTCAATTCGTTCCCCCTATTTTAAAGCAAGGATTGGACCTTGGTGATCTCAAGGTAGTTTCTCTTATCATTGAGAAATGCCGAACAAAATTCTAACAAGAGAGAATGTATTGACTTTCCTTGTATTTATATTTCGCTATTTTTTTAACTTTCCCTGATTTTGTTCACAAGGAATATCCTAACTCGTGGAACGTTTATGAGGACCAAAGTTTATTCAAGACCTCACCAGTTGAAAATCTGGTTTGTTTTAATACCTTGGTTTCCTTATAAAATGCTGAGCAGTGTTTTTGTTTATGGAGAATATATGTTGAAAACCCTCCTTAATAAGCATTGCTATTGGAGTTTTCCTGTTTCTTTCTGACCTATCTGCTAATATCACAGCAGAAAGAAATGTCTGTACAATTTGATGATTTGTTCAAGAAGGCCTGGGAAGAGGAAGCCATAGTATCTGTGGAAGATGGTGTGTGTTCTGGTATTTGTAAACTGAAACACTATAAATTTAAATTGATGATGTCATCAACAAGAAGGTCTGTTTGGCACTAAAATTGACATACAAGATGCTACCATATTTGTACGTCAAGTCCATTTATTGAGTCTTGTTCAATATTGTTGGTTCTATTGATTTTCTTTTGGGTTGAATCAATTTCTTTCGCAATAAATTTGGTTTAAGTTTTTCCTTTTTGCCTTCAAACTTATTCCAAAAATATTAGAATGAATAAAACCAATTTCATTTTATGTCATTTGAGTCTGTGCATTGGAAAGTAACCTTCAATTTTTGGGTTGAAAATATTAGCCTATTGGGTGTAATGATTTTCAGTCAACATGTTGGCTTAGGAAAATTCATACACACAGCTTTTAAGACGGAAAATGAACTAACCAATATATTCTTGCTAGTTGCTAGTAGATGATTTGGGAGGTTGGTATGGTGGCGTGATTGAATCGTCTTGGAATATACTATTTCTGCAAGCACGAAACACTTGCATTAAGGAAAACTTTATTTAACGGGTGTATATTCTTTGAATGAAAGTATAGTTCTTGTTGTTTGACTCTCTTTCATTCTTTTGTTCTCTATTATTATGTTTGGAAAGGTGAATCACCAAAAGCAGAATCTATTAAGTTAGAAGTTCAAGTAAATGAGCTCGAAGGCACTAGCATTGCACCTGCATTGGAAAAATCTGTGTTGGATGAAATTTTGTCCCTTGATTCTGGAGGATTGTCATTAAGATCCGATCAAGCTACTGATCATGGTAGAGAAAAGAAGAAGGAGGTAAGTAATGGTTTCAATCAACTTTACTTTTGTGCTTTCTGTTCCTTTCTCTTTGTCACTGTTTTTTGCGGTGATTGATAAGCAGGCTTGGGTTGTAGTTGGTGGTCGCGAAGAGATTTCTTTGCACTTCCATGAGCTTGTACCTGATATGGCCCTTGATTTTCCTTTCGAATTGGACACTTTTCAAAAGGAGGTAATTATTATTATTATTTTCTGAAGAAGATACAAATTTCATTTCTATTGTAAGATATAGTAAGAACGTATGAACAAAAGATGCAATTTACTATGATGTGAAGTTATGTATGAAAGCAATTTTGCTTATATTTCATTGAGTAAAAAACAGTAATATGTATGTAAAAGAACCTCAATCATAGGTCGATAAAAGTAACGATCAAGTAATTTGCCTATGTCTATAAATGGAAGGAGAAATACAGCTATACAAATGTACAAGGAAATAAATAAATGGTTAAAAATCACTTTTTGGTCCCTGAACCTTCATGAAAGCAATAATTTAGTCCATGAACTTTGATTTTAACAATTTAGTTCCTATACCTTCACTTTTGTAACAATTTAGTCTTGAACTTTAGTTTGTAACAATTTAGTCTTGAACTTTAGTATGTAACAATTAGTCACTCTAATTTTGTAATGATCTAGTCCCTATCTTGAAAATTATTGTTAAGATTTCTGAAATCTCTTATATAGGTAGGCCAATAAATTTATTAGGGATCCTATATGTCTATAAGCTACGAAGTCTAAATTGTTATACAATAAAAATCAACATTTAGTTTTGATGATTTTTCTTTCTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGGCAAGGATTAAATTGTTACAAATTTGAAAGTATAAGGACTAAATTGTTATAATTTGAAAGTTCATGGACTAAATTAATGCTCTCACGAAAGTTTAAGGACTAAAAGTGTTCTCTAACCTAAATAAAACTTTAAGTTTTCATCTTGATTTTCTGCACTCCCCCAAGCTGGATGACATGCATTCCTTGCTTAGAAATCAGTACCAAGGGTTGTTTGATGTAATGCCATGGTCAATATGTCTGCAACTTGTTATTGGGAAGGCACATGTCTTACATTTATTTGTTATTCTTACTGTTCTCTCTAATGAAATGACAATCTATCTCAACAGCTTCATTTGAATACGATGCACTGGATTTTTTTTGCAATAGGAATGATAGATTTTATTATCACACATTAATTCTATGACACCTTCTGTCTGGCTATAACTCAGAAAGTAGGCATTGTAACCTAATTCCTTCATAAATTACTTGAGCTAATGATCTAAACTTAGCTTCAACACTACTTCAAACGCCAACTTGTTGCTCAATGCCACTAATTCCATCACATATAGATGCAAGACCTTAAAGTTGATTTGTATTAATGATAAAGATAATAGATATTAGTGAGGCATCATTTTCCTTCCATTCCTTCTGCCACCCAACATAATTCCATATTTTAAGTACCTGATTATCTATCTTTTGGTGGTGCTGTTGGTACTTGGTATTATTTACTTTATGTAGTTCTCATAGTAATTATGACCTAAAATTTTTATTTGAAAGAAAAAAGGTCAACCAAATTTTTTTATTAGTTGTCGAATGAATAATTCATTTCTATTATTGTCTTGTGGTCATTACAGGCTATATATCATCTTGAAAAAGGGGATTCTGTATTTGTTGCTGCACATACATCAGCTGGAAAGACTGTTGTTGCGGAGTATGCATTTGCGCTAGCCACTAAAGTATGAAACGTTACTTCCAATGTCACAAATACATATTTATGAACAACATAGTTGAGCCTAACACTGGTCCATGTACTCAAGTTTTTTTCATTTGTTTTCGAGCTTGCTTATACTATTATATTCTTAATGAATGCTAAGGTTTTATTTCTGATCTTAATGCCATACAGCACTGTACTAGGGCTGTATATACAGCTCCCATCAAAACCATCAGTAATCAGAAGTATCGGGATTTTTGTGGGAAATTTGATGTTGGACTTTTGACTGGCGATGTCAGCTTGAGGCCAGAGGCTTCTTGTCTTATAATGACAACCGAAATATTAAGGTCAATGCTTTATCGAGGTGCTGATATTATTCGTGATATTGAATGGGTAAAGGAGCTTATTATGTGCTAA

mRNA sequence

TAATTTAGATGCTGCAAGCACAGCCCTTGAACGTTTGAGTACCGCCGAAGCAGTGAAGTACCTGCAGTCACTGTCGGACGTTGGCTAAGTATCAAAACGGGGACGGATTGTGCCGCGCACTCGGCTCGATACGTTCCTTCCTCTGGAACCCGCCCAAATCTTCAGAATCTAATTTAGAGATAATTGTGCGTGGAAATTCAGAACCGCCGGGAAGAGTACGGAAGTTCGGTTGCAGAACTCTGATATGAAATGGATCCAATTGAAGCAACAAAAGAGCTTTCGTTTCGCGTCGGTTTTTCCGGCCACAGCGGCCATCTCAGAGTCGAGCCTCTTTCAACTGTGGAGCGCTCCAGCCCTGTTAGATCGCTCCCGGATTTCATACTTCCTCCCGCATTTCCTAAGGAAACTCCCGAAACAATAAAGGGCTACATAGAAGAGACTTATCTCCAGCCGAGGTTAGACCCTGATGAATTTTCCCCTGAAAAAGTGGGAAGACAATGGGATTTTGATTGGTTTGAAATGGCAAAAGTATCTTTGGATCCATCACAACCAAGATCAGTTGTGGTTCCCACTTGGGTGTTGCCATTTGAACGACCAAAGAAGGACGGAACAACTGGAGGGACATGGGAACCTTGTTCTGTGCAGGTGGATGTTTCTGAGTTAAATGTGGAAGCTCAAGAATCTGGTTCACAGCCACGCGTGCCAGGACCGGCAAAAGATTTTGTAAGGGGAAGCATAAATAATCGTCCTTTTCGACCTGGTGGTTTGGATGATTCCCAATCTGTTGATAGAATTCTTCCTGATGCAGCTTCAAATGGTGAGTGGGTTCAAGAAATTCTAAATGGTGGTCGTGCTCAATTCGTTCCCCCTATTTTAAAGCAAGGATTGGACCTTGGTGATCTCAAGGAATATCCTAACTCGTGGAACGTTTATGAGGACCAAAGTTTATTCAAGACCTCACCAGTTGAAAATCTGCAGAAAGAAATGTCTGTACAATTTGATGATTTGTTCAAGAAGGCCTGGGAAGAGGAAGCCATAGTATCTGTGGAAGATGGTGTGTGTTCTGGTGAATCACCAAAAGCAGAATCTATTAAGTTAGAAGTTCAAGTAAATGAGCTCGAAGGCACTAGCATTGCACCTGCATTGGAAAAATCTGTGTTGGATGAAATTTTGTCCCTTGATTCTGGAGGATTGTCATTAAGATCCGATCAAGCTACTGATCATGGTAGAGAAAAGAAGAAGGAGGCTTGGGTTGTAGTTGGTGGTCGCGAAGAGATTTCTTTGCACTTCCATGAGCTTGTACCTGATATGGCCCTTGATTTTCCTTTCGAATTGGACACTTTTCAAAAGGAGCACTGTACTAGGGCTGTATATACAGCTCCCATCAAAACCATCAGTAATCAGAAGTATCGGGATTTTTGTGGGAAATTTGATGTTGGACTTTTGACTGGCGATGTCAGCTTGAGGCCAGAGGCTTCTTGTCTTATAATGACAACCGAAATATTAAGGTCAATGCTTTATCGAGGTGCTGATATTATTCGTGATATTGAATGGGTAAAGGAGCTTATTATGTGCTAA

Coding sequence (CDS)

ATGGATCCAATTGAAGCAACAAAAGAGCTTTCGTTTCGCGTCGGTTTTTCCGGCCACAGCGGCCATCTCAGAGTCGAGCCTCTTTCAACTGTGGAGCGCTCCAGCCCTGTTAGATCGCTCCCGGATTTCATACTTCCTCCCGCATTTCCTAAGGAAACTCCCGAAACAATAAAGGGCTACATAGAAGAGACTTATCTCCAGCCGAGGTTAGACCCTGATGAATTTTCCCCTGAAAAAGTGGGAAGACAATGGGATTTTGATTGGTTTGAAATGGCAAAAGTATCTTTGGATCCATCACAACCAAGATCAGTTGTGGTTCCCACTTGGGTGTTGCCATTTGAACGACCAAAGAAGGACGGAACAACTGGAGGGACATGGGAACCTTGTTCTGTGCAGGTGGATGTTTCTGAGTTAAATGTGGAAGCTCAAGAATCTGGTTCACAGCCACGCGTGCCAGGACCGGCAAAAGATTTTGTAAGGGGAAGCATAAATAATCGTCCTTTTCGACCTGGTGGTTTGGATGATTCCCAATCTGTTGATAGAATTCTTCCTGATGCAGCTTCAAATGGTGAGTGGGTTCAAGAAATTCTAAATGGTGGTCGTGCTCAATTCGTTCCCCCTATTTTAAAGCAAGGATTGGACCTTGGTGATCTCAAGGAATATCCTAACTCGTGGAACGTTTATGAGGACCAAAGTTTATTCAAGACCTCACCAGTTGAAAATCTGCAGAAAGAAATGTCTGTACAATTTGATGATTTGTTCAAGAAGGCCTGGGAAGAGGAAGCCATAGTATCTGTGGAAGATGGTGTGTGTTCTGGTGAATCACCAAAAGCAGAATCTATTAAGTTAGAAGTTCAAGTAAATGAGCTCGAAGGCACTAGCATTGCACCTGCATTGGAAAAATCTGTGTTGGATGAAATTTTGTCCCTTGATTCTGGAGGATTGTCATTAAGATCCGATCAAGCTACTGATCATGGTAGAGAAAAGAAGAAGGAGGCTTGGGTTGTAGTTGGTGGTCGCGAAGAGATTTCTTTGCACTTCCATGAGCTTGTACCTGATATGGCCCTTGATTTTCCTTTCGAATTGGACACTTTTCAAAAGGAGCACTGTACTAGGGCTGTATATACAGCTCCCATCAAAACCATCAGTAATCAGAAGTATCGGGATTTTTGTGGGAAATTTGATGTTGGACTTTTGACTGGCGATGTCAGCTTGAGGCCAGAGGCTTCTTGTCTTATAATGACAACCGAAATATTAAGGTCAATGCTTTATCGAGGTGCTGATATTATTCGTGATATTGAATGGGTAAAGGAGCTTATTATGTGCTAA

Protein sequence

MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSSPVRSLPDFILPPAFPKETPETIKGYIEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFERPKKDGTTGGTWEPCSVQVDVSELNVEAQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSVDRILPDAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVENLQKEMSVQFDDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVNELEGTSIAPALEKSVLDEILSLDSGGLSLRSDQATDHGREKKKEAWVVVGGREEISLHFHELVPDMALDFPFELDTFQKEHCTRAVYTAPIKTISNQKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVKELIMC

Homology

[Close]

BLAST of Carg12414 vs. NCBI nr
Match: KAG7036971.1 (DExH-box ATP-dependent RNA helicase DExH11 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 904.4 bits (2336), Expect = 3.8e-259
Identity = 442/442 (100.00%), Postives = 442/442 (100.00%), Query Frame = 0


Query: 1   MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSSPVRSLPDFILPPAFPKETPETIKGY 60
           MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSSPVRSLPDFILPPAFPKETPETIKGY
Sbjct: 1   MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSSPVRSLPDFILPPAFPKETPETIKGY 60

Query: 61  IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFERPKKDG 120
           IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFERPKKDG
Sbjct: 61  IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFERPKKDG 120

Query: 121 TTGGTWEPCSVQVDVSELNVEAQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSVD 180
           TTGGTWEPCSVQVDVSELNVEAQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSVD
Sbjct: 121 TTGGTWEPCSVQVDVSELNVEAQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSVD 180

Query: 181 RILPDAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE 240
           RILPDAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE
Sbjct: 181 RILPDAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE 240

Query: 241 NLQKEMSVQFDDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVNELEGTSIAPALE 300
           NLQKEMSVQFDDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVNELEGTSIAPALE
Sbjct: 241 NLQKEMSVQFDDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVNELEGTSIAPALE 300

Query: 301 KSVLDEILSLDSGGLSLRSDQATDHGREKKKEAWVVVGGREEISLHFHELVPDMALDFPF 360
           KSVLDEILSLDSGGLSLRSDQATDHGREKKKEAWVVVGGREEISLHFHELVPDMALDFPF
Sbjct: 301 KSVLDEILSLDSGGLSLRSDQATDHGREKKKEAWVVVGGREEISLHFHELVPDMALDFPF 360

Query: 361 ELDTFQKEHCTRAVYTAPIKTISNQKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILR 420
           ELDTFQKEHCTRAVYTAPIKTISNQKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILR
Sbjct: 361 ELDTFQKEHCTRAVYTAPIKTISNQKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILR 420

Query: 421 SMLYRGADIIRDIEWVKELIMC 443
           SMLYRGADIIRDIEWVKELIMC
Sbjct: 421 SMLYRGADIIRDIEWVKELIMC 442

[Close]

BLAST of Carg12414 vs. NCBI nr
Match: XP_022948672.1 (DExH-box ATP-dependent RNA helicase DExH11 isoform X1 [Cucurbita moschata])

HSP 1 Score: 868.6 bits (2243), Expect = 2.3e-248
Identity = 433/470 (92.13%), Postives = 435/470 (92.55%), Query Frame = 0


Query: 1   MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSSPVRSLPDFILPPAFPKETPETIKGY 60
           MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSSPVRSLPDFILPPAFPKETPETIKGY
Sbjct: 1   MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSSPVRSLPDFILPPAFPKETPETIKGY 60

Query: 61  IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFERPKKDG 120
           IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFERPKKDG
Sbjct: 61  IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFERPKKDG 120

Query: 121 TTGGTWEPCSVQVDVSELNVEAQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSVD 180
           TTGGTWEPCSVQVDVSELNVEAQESGSQPR+PGPAKDFVRGSINNRPFRPGGLDDSQSVD
Sbjct: 121 TTGGTWEPCSVQVDVSELNVEAQESGSQPRMPGPAKDFVRGSINNRPFRPGGLDDSQSVD 180

Query: 181 RILPDAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE 240
           RILP AASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE
Sbjct: 181 RILPVAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE 240

Query: 241 NLQKEMSVQFDDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVNELEGTSIAPALE 300
           NLQKEMSVQFDDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVNELEGTSIAPALE
Sbjct: 241 NLQKEMSVQFDDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVNELEGTSIAPALE 300

Query: 301 KSVLDEILSLDSGGLSLRSDQATDHGREKKKEAWVVVGGREEISLHFHELVPDMALDFPF 360
           KSVLDEILSLDSGGLSLRSDQATDHGRE+KKEAWVVVGGREEISLHFHELVPDMALDFPF
Sbjct: 301 KSVLDEILSLDSGGLSLRSDQATDHGREQKKEAWVVVGGREEISLHFHELVPDMALDFPF 360

Query: 361 ELDTFQKE----------------------------------HCTRAVYTAPIKTISNQK 420
           ELDTFQKE                                  HCTRAVYTAPIKTISNQK
Sbjct: 361 ELDTFQKEAIYHLEKGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQK 420

Query: 421 YRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 437
           YRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV
Sbjct: 421 YRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 470

[Close]

BLAST of Carg12414 vs. NCBI nr
Match: XP_023522326.1 (DExH-box ATP-dependent RNA helicase DExH11-like, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 862.4 bits (2227), Expect = 1.6e-246
Identity = 430/470 (91.49%), Postives = 433/470 (92.13%), Query Frame = 0


Query: 1   MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSSPVRSLPDFILPPAFPKETPETIKGY 60
           MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSSPVRSLPDFILPPAFPKETPETIKGY
Sbjct: 1   MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSSPVRSLPDFILPPAFPKETPETIKGY 60

Query: 61  IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFERPKKDG 120
           IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKV LDPSQPRSVVVPTWVLPFERPKKDG
Sbjct: 61  IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVYLDPSQPRSVVVPTWVLPFERPKKDG 120

Query: 121 TTGGTWEPCSVQVDVSELNVEAQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSVD 180
           TTGGTWEPCSVQVDVSELNVEAQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSVD
Sbjct: 121 TTGGTWEPCSVQVDVSELNVEAQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSVD 180

Query: 181 RILPDAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE 240
           RILPDAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE
Sbjct: 181 RILPDAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE 240

Query: 241 NLQKEMSVQFDDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVNELEGTSIAPALE 300
           NLQKEMSVQFDDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVN+LEG SIAPALE
Sbjct: 241 NLQKEMSVQFDDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVNQLEGYSIAPALE 300

Query: 301 KSVLDEILSLDSGGLSLRSDQATDHGREKKKEAWVVVGGREEISLHFHELVPDMALDFPF 360
           KSVLDEILSLDSGGLSLRSDQATD GREKK++AWVVVGGREEISLHFHELVPDMALDFPF
Sbjct: 301 KSVLDEILSLDSGGLSLRSDQATDDGREKKEQAWVVVGGREEISLHFHELVPDMALDFPF 360

Query: 361 ELDTFQKE----------------------------------HCTRAVYTAPIKTISNQK 420
           ELDTFQKE                                  HCTRAVYTAPIKTISNQK
Sbjct: 361 ELDTFQKEAIYHLEKGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQK 420

Query: 421 YRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 437
           YRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV
Sbjct: 421 YRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 470

[Close]

BLAST of Carg12414 vs. NCBI nr
Match: XP_022948673.1 (DExH-box ATP-dependent RNA helicase DExH11 isoform X2 [Cucurbita moschata])

HSP 1 Score: 862.4 bits (2227), Expect = 1.6e-246
Identity = 432/470 (91.91%), Postives = 434/470 (92.34%), Query Frame = 0


Query: 1   MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSSPVRSLPDFILPPAFPKETPETIKGY 60
           MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSSPVRSLPDFILPPAFPKETPETIKGY
Sbjct: 1   MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSSPVRSLPDFILPPAFPKETPETIKGY 60

Query: 61  IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFERPKKDG 120
           IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFERPKKDG
Sbjct: 61  IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFERPKKDG 120

Query: 121 TTGGTWEPCSVQVDVSELNVEAQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSVD 180
           TTGGTWEPCSVQVDVSELNVEAQESGSQPR+PGPAKDFVRGSINNRPFRPGGLDDSQSVD
Sbjct: 121 TTGGTWEPCSVQVDVSELNVEAQESGSQPRMPGPAKDFVRGSINNRPFRPGGLDDSQSVD 180

Query: 181 RILPDAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE 240
           RILP AASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE
Sbjct: 181 RILPVAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE 240

Query: 241 NLQKEMSVQFDDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVNELEGTSIAPALE 300
           NL KEMSVQFDDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVNELEGTSIAPALE
Sbjct: 241 NL-KEMSVQFDDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVNELEGTSIAPALE 300

Query: 301 KSVLDEILSLDSGGLSLRSDQATDHGREKKKEAWVVVGGREEISLHFHELVPDMALDFPF 360
           KSVLDEILSLDSGGLSLRSDQATDHGRE+KKEAWVVVGGREEISLHFHELVPDMALDFPF
Sbjct: 301 KSVLDEILSLDSGGLSLRSDQATDHGREQKKEAWVVVGGREEISLHFHELVPDMALDFPF 360

Query: 361 ELDTFQKE----------------------------------HCTRAVYTAPIKTISNQK 420
           ELDTFQKE                                  HCTRAVYTAPIKTISNQK
Sbjct: 361 ELDTFQKEAIYHLEKGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQK 420

Query: 421 YRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 437
           YRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV
Sbjct: 421 YRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 469

[Close]

BLAST of Carg12414 vs. NCBI nr
Match: XP_022997907.1 (DExH-box ATP-dependent RNA helicase DExH11 isoform X1 [Cucurbita maxima])

HSP 1 Score: 861.7 bits (2225), Expect = 2.8e-246
Identity = 430/470 (91.49%), Postives = 433/470 (92.13%), Query Frame = 0


Query: 1   MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSSPVRSLPDFILPPAFPKETPETIKGY 60
           MDPIEATKELSFRVGFSGHSGHLRVEPLSTV+RSSPVRSLPDFILPPAFPKETPETIKGY
Sbjct: 1   MDPIEATKELSFRVGFSGHSGHLRVEPLSTVDRSSPVRSLPDFILPPAFPKETPETIKGY 60

Query: 61  IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFERPKKDG 120
           IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFER KKDG
Sbjct: 61  IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFERTKKDG 120

Query: 121 TTGGTWEPCSVQVDVSELNVEAQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSVD 180
           TTGGTWEPCSVQVDVSELNVEAQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSVD
Sbjct: 121 TTGGTWEPCSVQVDVSELNVEAQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSVD 180

Query: 181 RILPDAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE 240
           RILPDAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE
Sbjct: 181 RILPDAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE 240

Query: 241 NLQKEMSVQFDDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVNELEGTSIAPALE 300
           NLQKE+SVQFDDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVNELEGTSIAPALE
Sbjct: 241 NLQKELSVQFDDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVNELEGTSIAPALE 300

Query: 301 KSVLDEILSLDSGGLSLRSDQATDHGREKKKEAWVVVGGREEISLHFHELVPDMALDFPF 360
           KSVLDEILSLDSGGLSLRSDQATD G E+KKEAWVVVGGREEISLHFHELVPDMALDFPF
Sbjct: 301 KSVLDEILSLDSGGLSLRSDQATDDGGEQKKEAWVVVGGREEISLHFHELVPDMALDFPF 360

Query: 361 ELDTFQKE----------------------------------HCTRAVYTAPIKTISNQK 420
           ELDTFQKE                                  HCTRAVYTAPIKTISNQK
Sbjct: 361 ELDTFQKEAIYHLEKGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQK 420

Query: 421 YRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 437
           YRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV
Sbjct: 421 YRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 470

[Close]

BLAST of Carg12414 vs. ExPASy Swiss-Prot
Match: F4JAA5 (DExH-box ATP-dependent RNA helicase DExH11 OS=Arabidopsis thaliana OX=3702 GN=SKI2 PE=1 SV=1)

HSP 1 Score: 530.8 bits (1366), Expect = 1.5e-149
Identity = 278/476 (58.40%), Postives = 325/476 (68.28%), Query Frame = 0


Query: 1   MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSSPVRSLPDFILPPAFPKETPETIKGY 60
           M+ +EA  EL FRVGFSGH GHLRVEP  T ER   + SLPDF+ PPAF KET E+IK +
Sbjct: 1   MNKVEAGNELGFRVGFSGHGGHLRVEPFYTAERDDALNSLPDFVSPPAFAKETKESIKKH 60

Query: 61  IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFERPKKDG 120
           IEE YL PRL+PD+FS EK   QWDFDWF   K+ L PS PRSVVVPTW LPF R K+D 
Sbjct: 61  IEEKYLIPRLEPDQFSAEKAENQWDFDWFSRVKMPLQPSLPRSVVVPTWELPFRRQKED- 120

Query: 121 TTGGTWEPCSVQVDVSELNVEAQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSVD 180
           T  G WEP SV+VD+SE     Q+SG  PR+ GP KDF+RGS+NNRPFRPGGL+DSQS +
Sbjct: 121 TENGAWEPKSVEVDLSEQMYGDQDSGFFPRMVGPPKDFLRGSVNNRPFRPGGLEDSQSSE 180

Query: 181 RILPDAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE 240
           R+LP+  S+G+WVQE+LNGG AQ VPP  KQ LDLGDL  YP +W+VYED S    +  E
Sbjct: 181 RVLPEGVSSGQWVQELLNGGPAQTVPPSFKQSLDLGDLMPYPQTWSVYEDHSSHGNASDE 240

Query: 241 NLQKEMSVQFDDLFKKAWEEEAIVSVE--DGVCSGESPKAESIKLEVQVNELEGTSIAPA 300
           N  K +S+QFDDLFKKAWEE+    +E  D     ESPKAE+   E          ++  
Sbjct: 241 NSSK-LSIQFDDLFKKAWEEDTFSELEGDDHTAGSESPKAEA---EPDAKASISNEVSKG 300

Query: 301 LEK--SVLDEILSLDSGGLSLRSDQATDHGREK--KKEAWVVVGGREEISLHFHELVPDM 360
           LE   +VLDEILS  S   ++ S++A     +K  +KE W   G  ++I+  F+ELVPDM
Sbjct: 301 LETDVTVLDEILS--SAKTAIMSEEAVTGSSDKQLRKEGWATKGDSQDIADRFYELVPDM 360

Query: 361 ALDFPFELDTFQKE----------------------------------HCTRAVYTAPIK 420
           A++FPFELD FQKE                                  HCTRAVYTAPIK
Sbjct: 361 AIEFPFELDNFQKEAICCLEKGESVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIK 420

Query: 421 TISNQKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 437
           TISNQKYRDFCGKFDVGLLTGDVS+RPEASCLIMTTEILRSMLYRGADIIRDIEWV
Sbjct: 421 TISNQKYRDFCGKFDVGLLTGDVSIRPEASCLIMTTEILRSMLYRGADIIRDIEWV 469

[Close]

BLAST of Carg12414 vs. ExPASy Swiss-Prot
Match: P35207 (Antiviral helicase SKI2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SKI2 PE=1 SV=2)

HSP 1 Score: 146.0 bits (367), Expect = 1.0e-33
Identity = 147/476 (30.88%), Postives = 212/476 (44.54%), Query Frame = 0


Query: 15  GFSGHSGHLRVEPLSTVERSSPVRSLPDFILPPAFPK-ETPETIKGYIEETYLQPR---- 74
           GFS  S     + L  +  ++ V    D I    F   + P+     I++ +L+P     
Sbjct: 4   GFSSSSIQELYQSLKEITNNADVELFEDRITKLDFESTDEPKHANDIIKDRFLRPSNALP 63

Query: 75  ---LD-----PDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFERPKKDGT 134
              LD     P   SPE    + D+   E+ KV  DP    S         F+R   +G 
Sbjct: 64  WSLLDMVQDVPHTSSPEDCSGKLDYK--ELLKVP-DPINRTS-------YQFKRTGLEGK 123

Query: 135 TGGTWEPCSVQVDVSEL-NVEAQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSVD 194
             G  E    +VD+ E+ N  A  S S  R     ++ VRGS    PF PGG+     + 
Sbjct: 124 ISGYKE----EVDLKEVANANASNSLSITRSINHNQNSVRGSTAQLPFTPGGI----PMK 183

Query: 195 RILPDAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE 254
            +  D+  NG       +   A     + K G  L D+ E  N      D      SP E
Sbjct: 184 SVKTDSEQNG-------SSTMANATKLLHKDGQGLFDIPEGMNRGIKPMD------SPAE 243

Query: 255 NLQKEMSVQFDDLFK-KAWEEEAIVSVE--DGVCSGESPKAESIKLEVQVNELEGTSIAP 314
           N  ++ + QF +L +    + E  + +E  +     E   A+SI  E+     E T+ A 
Sbjct: 244 N--EDQNGQFKELKQLNEIDNELDIRIEANEAKLKEEEKSAKSISEEIMEEATEETT-AD 303

Query: 315 ALEKSVLDEILSLDSGGLSLRSDQATDHGREKKKEAWVVVGGREEISLHFHELVPDMALD 374
             + + +DE+L +   G+     +        KKE   VV    +I  +F EL+P+ A  
Sbjct: 304 NADDAEIDELLPI---GIDFGRTKPVSKSVPVKKEWAHVVDLNHKIE-NFDELIPNPARS 363

Query: 375 FPFELDTFQKE----------------------------------HCTRAVYTAPIKTIS 434
           +PFELDTFQKE                                  + T+ +YT+PIK +S
Sbjct: 364 WPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALS 423

Query: 435 NQKYRDFCGKFD---VGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 437
           NQK+RDF   FD   +GL+TGDV + P+A+CLIMTTEILRSMLYRGAD+IRD+E+V
Sbjct: 424 NQKFRDFKETFDDVNIGLITGDVQINPDANCLIMTTEILRSMLYRGADLIRDVEFV 441

[Close]

BLAST of Carg12414 vs. ExPASy Swiss-Prot
Match: O59801 (Putative ATP-dependent RNA helicase C550.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCC550.03c PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 3.9e-33
Identity = 140/449 (31.18%), Postives = 200/449 (44.54%), Query Frame = 0


Query: 25  VEPLSTVERSSPVRSLPDFILPPAFPKETPETIKGYIEETYLQPRLDPDEFSPEKVGRQW 84
           V+ ++ V  S+  +   D I   +F      T   Y  +T+L+P     +    K+ ++W
Sbjct: 6   VDAINEVAVSNKDKIELDGIKDDSFDGHLSITEATYDVDTFLKPSPALSKDWIRKLQKKW 65

Query: 85  DFDWFEMAKVSLDPSQPRSVVVPTWVLPFERPKKDGTTGGTWEPCSVQVDVSELNVEAQE 144
           D +           +  R+ +       F+R   +G   G  E   V   + +LN  ++ 
Sbjct: 66  DREITYKGLYEYPETLARTQI------RFQRHGLEGKIMGYKE---VPELIEDLN--SKN 125

Query: 145 SGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSVDRILPDAASNGEWVQEILNG--GRA 204
           S S  R P    +FVRGS +N PF    L D   VD I  + +     V+  L G  G  
Sbjct: 126 SSSFLRKPSSKNEFVRGSTSNIPF----LADDSDVDAIAGEPS-----VKMALYGEDGLL 185

Query: 205 QFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVENLQKEMSVQFDDLFKKAWEEEA 264
           Q VPP   +GL                  S+  TS  +NL        D+   + W+ + 
Sbjct: 186 Q-VPPGFSRGL------------------SMTATSTTDNLN-------DEFDPEKWDTKK 245

Query: 265 IVSVEDGVCSGESPKAESIKLEVQVNELEGTSIAPALEKSVLDEILSLDSGGLSLRSDQA 324
           + S              S +  V ++EL         + S +D++L      +SL     
Sbjct: 246 VKS--------------SNRNFVTIHELNEHLKNVNSKHSEIDDLLPDKRSIVSLPPSTL 305

Query: 325 TDHGREKKKEAWVVVGGREEISLHFHELVPDMALDFPFELDTFQKE-------------- 384
             H   K+ +   VV     I  +F +LVP+MALDFPFELD FQKE              
Sbjct: 306 NLH---KQPDYAHVVDSSAPIE-NFQQLVPEMALDFPFELDNFQKEAIYHLEMGDSVFVA 365

Query: 385 --------------------HCTRAVYTAPIKTISNQKYRDFCGKF-DVGLLTGDVSLRP 437
                               H T+A+YT+PIK +SNQK+RDF  KF DVG+LTGDV + P
Sbjct: 366 AHTSAGKTVVAEYAIALAQKHMTKAIYTSPIKALSNQKFRDFKHKFEDVGILTGDVQVNP 390

[Close]

BLAST of Carg12414 vs. ExPASy Swiss-Prot
Match: Q15477 (Helicase SKI2W OS=Homo sapiens OX=9606 GN=SKIV2L PE=1 SV=3)

HSP 1 Score: 132.9 bits (333), Expect = 9.0e-30
Identity = 104/341 (30.50%), Postives = 153/341 (44.87%), Query Frame = 0


Query: 132 QVDVSELNVEAQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSVD-RILPDAASNG 191
           +V +   N+ A  S S  R PGPA   + G+    PF PGG+D+    D     +A    
Sbjct: 118 EVLLENTNLSATTSLSLRRPPGPASQSLWGNPTQYPFWPGGMDEPTITDLNTREEAEEEI 177

Query: 192 EWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVENLQKEMSVQF 251
           ++ +++L       +PP  K+G+D    K+ P              +P   L   +S   
Sbjct: 178 DFEKDLLT------IPPGFKKGMDFAP-KDCP--------------TPAPGL-LSLSCML 237

Query: 252 DDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVNELEGTSIAPALEKSVLDEILSL 311
           + L     +E+      + V     P+ +++              AP    S L++++ L
Sbjct: 238 EPLDLGGGDEDE----NEAVGQPGGPRGDTVS--------ASPCSAPLARASSLEDLV-L 297

Query: 312 DSGGLSLRSDQATDHGREKKKEAWVVVGGREEISLHFHELVPDMALDFPFELDTFQKE-- 371
                ++ + +A +      +E W +          F+ L+P  A  + FE D FQK+  
Sbjct: 298 KEASTAVSTPEAPE---PPSQEQWAIPVDATSPVGDFYRLIPQPAFQWAFEPDVFQKQAI 357

Query: 372 --------------------------------HCTRAVYTAPIKTISNQKYRDFCGKF-D 431
                                           H TR +YT+PIK +SNQK+RDF   F D
Sbjct: 358 LHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGD 417

Query: 432 VGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 437
           VGLLTGDV L PEASCLIMTTEILRSMLY G+D+IRD+EWV
Sbjct: 418 VGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWV 420

[Close]

BLAST of Carg12414 vs. ExPASy Swiss-Prot
Match: Q9XIF2 (DExH-box ATP-dependent RNA helicase DExH9 OS=Arabidopsis thaliana OX=3702 GN=MTR4 PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.9e-19
Identity = 53/117 (45.30%), Postives = 70/117 (59.83%), Query Frame = 0


Query: 355 ALDFPFELDTFQKE---------------HCT-------------------RAVYTAPIK 414
           A DFPF LD+FQ E               H +                   R +YT+PIK
Sbjct: 61  AKDFPFTLDSFQSEAIKCLDNGESVMVSAHTSAGKTVVASYAIAMSLKENQRVIYTSPIK 120

Query: 415 TISNQKYRDFCGKF-DVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 437
            +SNQKYRDF  +F DVGL+TGDV++ P ASCL+MTTEILRSM Y+G++I+R++ W+
Sbjct: 121 ALSNQKYRDFKEEFSDVGLMTGDVTIDPNASCLVMTTEILRSMQYKGSEIMREVAWI 177

[Close]

BLAST of Carg12414 vs. ExPASy TrEMBL
Match: A0A6J1G9W4 (DExH-box ATP-dependent RNA helicase DExH11 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111452275 PE=4 SV=1)

HSP 1 Score: 868.6 bits (2243), Expect = 1.1e-248
Identity = 433/470 (92.13%), Postives = 435/470 (92.55%), Query Frame = 0


Query: 1   MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSSPVRSLPDFILPPAFPKETPETIKGY 60
           MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSSPVRSLPDFILPPAFPKETPETIKGY
Sbjct: 1   MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSSPVRSLPDFILPPAFPKETPETIKGY 60

Query: 61  IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFERPKKDG 120
           IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFERPKKDG
Sbjct: 61  IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFERPKKDG 120

Query: 121 TTGGTWEPCSVQVDVSELNVEAQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSVD 180
           TTGGTWEPCSVQVDVSELNVEAQESGSQPR+PGPAKDFVRGSINNRPFRPGGLDDSQSVD
Sbjct: 121 TTGGTWEPCSVQVDVSELNVEAQESGSQPRMPGPAKDFVRGSINNRPFRPGGLDDSQSVD 180

Query: 181 RILPDAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE 240
           RILP AASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE
Sbjct: 181 RILPVAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE 240

Query: 241 NLQKEMSVQFDDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVNELEGTSIAPALE 300
           NLQKEMSVQFDDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVNELEGTSIAPALE
Sbjct: 241 NLQKEMSVQFDDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVNELEGTSIAPALE 300

Query: 301 KSVLDEILSLDSGGLSLRSDQATDHGREKKKEAWVVVGGREEISLHFHELVPDMALDFPF 360
           KSVLDEILSLDSGGLSLRSDQATDHGRE+KKEAWVVVGGREEISLHFHELVPDMALDFPF
Sbjct: 301 KSVLDEILSLDSGGLSLRSDQATDHGREQKKEAWVVVGGREEISLHFHELVPDMALDFPF 360

Query: 361 ELDTFQKE----------------------------------HCTRAVYTAPIKTISNQK 420
           ELDTFQKE                                  HCTRAVYTAPIKTISNQK
Sbjct: 361 ELDTFQKEAIYHLEKGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQK 420

Query: 421 YRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 437
           YRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV
Sbjct: 421 YRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 470

[Close]

BLAST of Carg12414 vs. ExPASy TrEMBL
Match: A0A6J1G9Z1 (DExH-box ATP-dependent RNA helicase DExH11 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111452275 PE=4 SV=1)

HSP 1 Score: 862.4 bits (2227), Expect = 7.9e-247
Identity = 432/470 (91.91%), Postives = 434/470 (92.34%), Query Frame = 0


Query: 1   MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSSPVRSLPDFILPPAFPKETPETIKGY 60
           MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSSPVRSLPDFILPPAFPKETPETIKGY
Sbjct: 1   MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSSPVRSLPDFILPPAFPKETPETIKGY 60

Query: 61  IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFERPKKDG 120
           IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFERPKKDG
Sbjct: 61  IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFERPKKDG 120

Query: 121 TTGGTWEPCSVQVDVSELNVEAQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSVD 180
           TTGGTWEPCSVQVDVSELNVEAQESGSQPR+PGPAKDFVRGSINNRPFRPGGLDDSQSVD
Sbjct: 121 TTGGTWEPCSVQVDVSELNVEAQESGSQPRMPGPAKDFVRGSINNRPFRPGGLDDSQSVD 180

Query: 181 RILPDAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE 240
           RILP AASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE
Sbjct: 181 RILPVAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE 240

Query: 241 NLQKEMSVQFDDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVNELEGTSIAPALE 300
           NL KEMSVQFDDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVNELEGTSIAPALE
Sbjct: 241 NL-KEMSVQFDDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVNELEGTSIAPALE 300

Query: 301 KSVLDEILSLDSGGLSLRSDQATDHGREKKKEAWVVVGGREEISLHFHELVPDMALDFPF 360
           KSVLDEILSLDSGGLSLRSDQATDHGRE+KKEAWVVVGGREEISLHFHELVPDMALDFPF
Sbjct: 301 KSVLDEILSLDSGGLSLRSDQATDHGREQKKEAWVVVGGREEISLHFHELVPDMALDFPF 360

Query: 361 ELDTFQKE----------------------------------HCTRAVYTAPIKTISNQK 420
           ELDTFQKE                                  HCTRAVYTAPIKTISNQK
Sbjct: 361 ELDTFQKEAIYHLEKGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQK 420

Query: 421 YRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 437
           YRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV
Sbjct: 421 YRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 469

[Close]

BLAST of Carg12414 vs. ExPASy TrEMBL
Match: A0A6J1K6C8 (DExH-box ATP-dependent RNA helicase DExH11 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111492717 PE=4 SV=1)

HSP 1 Score: 861.7 bits (2225), Expect = 1.4e-246
Identity = 430/470 (91.49%), Postives = 433/470 (92.13%), Query Frame = 0


Query: 1   MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSSPVRSLPDFILPPAFPKETPETIKGY 60
           MDPIEATKELSFRVGFSGHSGHLRVEPLSTV+RSSPVRSLPDFILPPAFPKETPETIKGY
Sbjct: 1   MDPIEATKELSFRVGFSGHSGHLRVEPLSTVDRSSPVRSLPDFILPPAFPKETPETIKGY 60

Query: 61  IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFERPKKDG 120
           IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFER KKDG
Sbjct: 61  IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFERTKKDG 120

Query: 121 TTGGTWEPCSVQVDVSELNVEAQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSVD 180
           TTGGTWEPCSVQVDVSELNVEAQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSVD
Sbjct: 121 TTGGTWEPCSVQVDVSELNVEAQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSVD 180

Query: 181 RILPDAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE 240
           RILPDAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE
Sbjct: 181 RILPDAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE 240

Query: 241 NLQKEMSVQFDDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVNELEGTSIAPALE 300
           NLQKE+SVQFDDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVNELEGTSIAPALE
Sbjct: 241 NLQKELSVQFDDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVNELEGTSIAPALE 300

Query: 301 KSVLDEILSLDSGGLSLRSDQATDHGREKKKEAWVVVGGREEISLHFHELVPDMALDFPF 360
           KSVLDEILSLDSGGLSLRSDQATD G E+KKEAWVVVGGREEISLHFHELVPDMALDFPF
Sbjct: 301 KSVLDEILSLDSGGLSLRSDQATDDGGEQKKEAWVVVGGREEISLHFHELVPDMALDFPF 360

Query: 361 ELDTFQKE----------------------------------HCTRAVYTAPIKTISNQK 420
           ELDTFQKE                                  HCTRAVYTAPIKTISNQK
Sbjct: 361 ELDTFQKEAIYHLEKGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQK 420

Query: 421 YRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 437
           YRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV
Sbjct: 421 YRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 470

[Close]

BLAST of Carg12414 vs. ExPASy TrEMBL
Match: A0A6J1KFA8 (DExH-box ATP-dependent RNA helicase DExH11 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111492717 PE=4 SV=1)

HSP 1 Score: 855.5 bits (2209), Expect = 9.7e-245
Identity = 429/470 (91.28%), Postives = 432/470 (91.91%), Query Frame = 0


Query: 1   MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSSPVRSLPDFILPPAFPKETPETIKGY 60
           MDPIEATKELSFRVGFSGHSGHLRVEPLSTV+RSSPVRSLPDFILPPAFPKETPETIKGY
Sbjct: 1   MDPIEATKELSFRVGFSGHSGHLRVEPLSTVDRSSPVRSLPDFILPPAFPKETPETIKGY 60

Query: 61  IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFERPKKDG 120
           IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFER KKDG
Sbjct: 61  IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFERTKKDG 120

Query: 121 TTGGTWEPCSVQVDVSELNVEAQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSVD 180
           TTGGTWEPCSVQVDVSELNVEAQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSVD
Sbjct: 121 TTGGTWEPCSVQVDVSELNVEAQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSVD 180

Query: 181 RILPDAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE 240
           RILPDAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE
Sbjct: 181 RILPDAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE 240

Query: 241 NLQKEMSVQFDDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVNELEGTSIAPALE 300
           NL KE+SVQFDDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVNELEGTSIAPALE
Sbjct: 241 NL-KELSVQFDDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVNELEGTSIAPALE 300

Query: 301 KSVLDEILSLDSGGLSLRSDQATDHGREKKKEAWVVVGGREEISLHFHELVPDMALDFPF 360
           KSVLDEILSLDSGGLSLRSDQATD G E+KKEAWVVVGGREEISLHFHELVPDMALDFPF
Sbjct: 301 KSVLDEILSLDSGGLSLRSDQATDDGGEQKKEAWVVVGGREEISLHFHELVPDMALDFPF 360

Query: 361 ELDTFQKE----------------------------------HCTRAVYTAPIKTISNQK 420
           ELDTFQKE                                  HCTRAVYTAPIKTISNQK
Sbjct: 361 ELDTFQKEAIYHLEKGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQK 420

Query: 421 YRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 437
           YRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV
Sbjct: 421 YRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 469

[Close]

BLAST of Carg12414 vs. ExPASy TrEMBL
Match: A0A6J1GAL5 (DExH-box ATP-dependent RNA helicase DExH11 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111452275 PE=4 SV=1)

HSP 1 Score: 853.6 bits (2204), Expect = 3.7e-244
Identity = 429/470 (91.28%), Postives = 431/470 (91.70%), Query Frame = 0


Query: 1   MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSSPVRSLPDFILPPAFPKETPETIKGY 60
           MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSSPVRSLPDFILPPAFPKETPETIKGY
Sbjct: 1   MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSSPVRSLPDFILPPAFPKETPETIKGY 60

Query: 61  IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFERPKKDG 120
           IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFERPKKDG
Sbjct: 61  IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFERPKKDG 120

Query: 121 TTGGTWEPCSVQVDVSELNVEAQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSVD 180
           TTGGTWEPCSVQVDVSELNVEAQESGSQPR+PGPAKDFVRGSINNRPFRPGGLDDSQSVD
Sbjct: 121 TTGGTWEPCSVQVDVSELNVEAQESGSQPRMPGPAKDFVRGSINNRPFRPGGLDDSQSVD 180

Query: 181 RILPDAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE 240
           RILP AASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE
Sbjct: 181 RILPVAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE 240

Query: 241 NLQKEMSVQFDDLFKKAWEEEAIVSVEDGVCSGESPKAESIKLEVQVNELEGTSIAPALE 300
           NLQKEMSVQFDDLFKKAWEEEAIVSVED    GESPKAESIKLEVQVNELEGTSIAPALE
Sbjct: 241 NLQKEMSVQFDDLFKKAWEEEAIVSVED----GESPKAESIKLEVQVNELEGTSIAPALE 300

Query: 301 KSVLDEILSLDSGGLSLRSDQATDHGREKKKEAWVVVGGREEISLHFHELVPDMALDFPF 360
           KSVLDEILSLDSGGLSLRSDQATDHGRE+KKEAWVVVGGREEISLHFHELVPDMALDFPF
Sbjct: 301 KSVLDEILSLDSGGLSLRSDQATDHGREQKKEAWVVVGGREEISLHFHELVPDMALDFPF 360

Query: 361 ELDTFQKE----------------------------------HCTRAVYTAPIKTISNQK 420
           ELDTFQKE                                  HCTRAVYTAPIKTISNQK
Sbjct: 361 ELDTFQKEAIYHLEKGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQK 420

Query: 421 YRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 437
           YRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV
Sbjct: 421 YRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 466

[Close]

BLAST of Carg12414 vs. TAIR 10
Match: AT3G46960.1 (RNA helicase, ATP-dependent, SK12/DOB1 protein )

HSP 1 Score: 530.8 bits (1366), Expect = 1.1e-150
Identity = 278/476 (58.40%), Postives = 325/476 (68.28%), Query Frame = 0


Query: 1   MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSSPVRSLPDFILPPAFPKETPETIKGY 60
           M+ +EA  EL FRVGFSGH GHLRVEP  T ER   + SLPDF+ PPAF KET E+IK +
Sbjct: 1   MNKVEAGNELGFRVGFSGHGGHLRVEPFYTAERDDALNSLPDFVSPPAFAKETKESIKKH 60

Query: 61  IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSQPRSVVVPTWVLPFERPKKDG 120
           IEE YL PRL+PD+FS EK   QWDFDWF   K+ L PS PRSVVVPTW LPF R K+D 
Sbjct: 61  IEEKYLIPRLEPDQFSAEKAENQWDFDWFSRVKMPLQPSLPRSVVVPTWELPFRRQKED- 120

Query: 121 TTGGTWEPCSVQVDVSELNVEAQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSVD 180
           T  G WEP SV+VD+SE     Q+SG  PR+ GP KDF+RGS+NNRPFRPGGL+DSQS +
Sbjct: 121 TENGAWEPKSVEVDLSEQMYGDQDSGFFPRMVGPPKDFLRGSVNNRPFRPGGLEDSQSSE 180

Query: 181 RILPDAASNGEWVQEILNGGRAQFVPPILKQGLDLGDLKEYPNSWNVYEDQSLFKTSPVE 240
           R+LP+  S+G+WVQE+LNGG AQ VPP  KQ LDLGDL  YP +W+VYED S    +  E
Sbjct: 181 RVLPEGVSSGQWVQELLNGGPAQTVPPSFKQSLDLGDLMPYPQTWSVYEDHSSHGNASDE 240

Query: 241 NLQKEMSVQFDDLFKKAWEEEAIVSVE--DGVCSGESPKAESIKLEVQVNELEGTSIAPA 300
           N  K +S+QFDDLFKKAWEE+    +E  D     ESPKAE+   E          ++  
Sbjct: 241 NSSK-LSIQFDDLFKKAWEEDTFSELEGDDHTAGSESPKAEA---EPDAKASISNEVSKG 300

Query: 301 LEK--SVLDEILSLDSGGLSLRSDQATDHGREK--KKEAWVVVGGREEISLHFHELVPDM 360
           LE   +VLDEILS  S   ++ S++A     +K  +KE W   G  ++I+  F+ELVPDM
Sbjct: 301 LETDVTVLDEILS--SAKTAIMSEEAVTGSSDKQLRKEGWATKGDSQDIADRFYELVPDM 360

Query: 361 ALDFPFELDTFQKE----------------------------------HCTRAVYTAPIK 420
           A++FPFELD FQKE                                  HCTRAVYTAPIK
Sbjct: 361 AIEFPFELDNFQKEAICCLEKGESVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIK 420

Query: 421 TISNQKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 437
           TISNQKYRDFCGKFDVGLLTGDVS+RPEASCLIMTTEILRSMLYRGADIIRDIEWV
Sbjct: 421 TISNQKYRDFCGKFDVGLLTGDVSIRPEASCLIMTTEILRSMLYRGADIIRDIEWV 469

[Close]

BLAST of Carg12414 vs. TAIR 10
Match: AT1G59760.1 (RNA helicase, ATP-dependent, SK12/DOB1 protein )

HSP 1 Score: 98.6 bits (244), Expect = 1.3e-20
Identity = 53/117 (45.30%), Postives = 70/117 (59.83%), Query Frame = 0


Query: 355 ALDFPFELDTFQKE---------------HCT-------------------RAVYTAPIK 414
           A DFPF LD+FQ E               H +                   R +YT+PIK
Sbjct: 61  AKDFPFTLDSFQSEAIKCLDNGESVMVSAHTSAGKTVVASYAIAMSLKENQRVIYTSPIK 120

Query: 415 TISNQKYRDFCGKF-DVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWV 437
            +SNQKYRDF  +F DVGL+TGDV++ P ASCL+MTTEILRSM Y+G++I+R++ W+
Sbjct: 121 ALSNQKYRDFKEEFSDVGLMTGDVTIDPNASCLVMTTEILRSMQYKGSEIMREVAWI 177

[Close]

BLAST of Carg12414 vs. TAIR 10
Match: AT2G06990.1 (RNA helicase, ATP-dependent, SK12/DOB1 protein )

HSP 1 Score: 94.7 bits (234), Expect = 1.9e-19
Identity = 40/66 (60.61%), Postives = 57/66 (86.36%), Query Frame = 0


Query: 372 RAVYTAPIKTISNQKYRDFCGKF-DVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADII 431
           R +YT+P+K +SNQKYR+   +F DVGL+TGDV+L P ASCL+MTTEILR+MLYRG++++
Sbjct: 126 RVIYTSPLKALSNQKYRELQHEFKDVGLMTGDVTLSPNASCLVMTTEILRAMLYRGSEVL 185

Query: 432 RDIEWV 437
           +++ WV
Sbjct: 186 KEVAWV 191

[Close]

BLAST of Carg12414 vs. TAIR 10
Match: AT1G70070.1 (DEAD/DEAH box helicase, putative )

HSP 1 Score: 63.9 bits (154), Expect = 3.6e-10
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 372 RAVYTAPIKTISNQKYRDF---CGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYR 426
           R  YT P+K +SNQK+R+F    G  +VGLLTGD ++  +A  +IMTTEILR+MLY+
Sbjct: 199 RLFYTTPLKALSNQKFREFRETFGDDNVGLLTGDSAINKDAQIVIMTTEILRNMLYQ 255

The following BLAST results are available for this feature:

BLAST of Carg12414 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7036971.1	3.8e-259	100.00	DExH-box ATP-dependent RNA helicase DExH11 [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022948672.1	2.3e-248	92.13	DExH-box ATP-dependent RNA helicase DExH11 isoform X1 [Cucurbita moschata]	[more]
XP_023522326.1	1.6e-246	91.49	DExH-box ATP-dependent RNA helicase DExH11-like, partial [Cucurbita pepo subsp. ...	[more]
XP_022948673.1	1.6e-246	91.91	DExH-box ATP-dependent RNA helicase DExH11 isoform X2 [Cucurbita moschata]	[more]
XP_022997907.1	2.8e-246	91.49	DExH-box ATP-dependent RNA helicase DExH11 isoform X1 [Cucurbita maxima]	[more]

BLAST of Carg12414 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JAA5	1.5e-149	58.40	DExH-box ATP-dependent RNA helicase DExH11 OS=Arabidopsis thaliana OX=3702 GN=SK...	[more]
P35207	1.0e-33	30.88	Antiviral helicase SKI2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)...	[more]
O59801	3.9e-33	31.18	Putative ATP-dependent RNA helicase C550.03c OS=Schizosaccharomyces pombe (strai...	[more]
Q15477	9.0e-30	30.50	Helicase SKI2W OS=Homo sapiens OX=9606 GN=SKIV2L PE=1 SV=3	[more]
Q9XIF2	1.9e-19	45.30	DExH-box ATP-dependent RNA helicase DExH9 OS=Arabidopsis thaliana OX=3702 GN=MTR...	[more]

BLAST of Carg12414 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G9W4	1.1e-248	92.13	DExH-box ATP-dependent RNA helicase DExH11 isoform X1 OS=Cucurbita moschata OX=3...	[more]
A0A6J1G9Z1	7.9e-247	91.91	DExH-box ATP-dependent RNA helicase DExH11 isoform X2 OS=Cucurbita moschata OX=3...	[more]
A0A6J1K6C8	1.4e-246	91.49	DExH-box ATP-dependent RNA helicase DExH11 isoform X1 OS=Cucurbita maxima OX=366...	[more]
A0A6J1KFA8	9.7e-245	91.28	DExH-box ATP-dependent RNA helicase DExH11 isoform X2 OS=Cucurbita maxima OX=366...	[more]
A0A6J1GAL5	3.7e-244	91.28	DExH-box ATP-dependent RNA helicase DExH11 isoform X3 OS=Cucurbita moschata OX=3...	[more]

BLAST of Carg12414 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46960.1	1.1e-150	58.40	RNA helicase, ATP-dependent, SK12/DOB1 protein	[more]
AT1G59760.1	1.3e-20	45.30	RNA helicase, ATP-dependent, SK12/DOB1 protein	[more]
AT2G06990.1	1.9e-19	60.61	RNA helicase, ATP-dependent, SK12/DOB1 protein	[more]
AT1G70070.1	3.6e-10	54.39	DEAD/DEAH box helicase, putative	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040801	Ski2, N-terminal domain	PFAM	PF17911	Ski2_N	coord: 79..224 e-value: 4.9E-18 score: 65.2
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 367..437 e-value: 1.2E-21 score: 78.6
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 368..431
None	No IPR available	PANTHER	PTHR12131:SF8	HELICASE SKI2W	coord: 140..436
None	No IPR available	PANTHER	PTHR12131	ATP-DEPENDENT RNA AND DNA HELICASE	coord: 140..436

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12414-RA	Carg12414-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070478	nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay
cellular_component	GO:0055087	Ski complex
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003724	RNA helicase activity