Carg12412 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg12412
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Serine/arginine-rich splicing factor SR45a-like
Location	Carg_Chr01: 3439541 .. 3441883 (-)
RNA-Seq Expression	Carg12412
Synteny	Carg12412

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTATTGCATGCGCTTTCGTGCGAGATATTACTAACGTTGAATACTCGGTTGCATTTCCTTTCGATTTTGGTTTTGCTTCTGCAGTTTGGGCGGTAAATTCTTTCTCTATCTCTCATTTCATGAACTCTTGCATTTATTTTCGTTGATTGAGATGATACGTTTGATTCTTGATTTCGATGATGTTTATGGAGAGAATTAGGGTAGGGTTATTGCTAGATTGTTTTTCGTGTGATTAGCATATTCATTTTCGAGTATTTCTTTCTATTGGAAGTCATGGATATTGTATTTCTTCATTTTCTTGTTCTTCACGAGTGTTAAACTGACGTTCCGATTTACCAGCTGCTCTATTCGAGAAACAAAATCATTGTAATTCCGTTGTACTCTTCTTTAGTAAATGCTGATCGTGTTAGGCTTGTCTTGGCTGATCAGGTCGCAGATGTCGTACTCCAGAAGGTCTAGGTACTCCCGCTCTCCTTCATACAAACGATCGGTCTCAAGGTCCCTGTCAAGGTCAAGGAGCCGTTCAAGGTATTTCTTGCTCAGGAACCCTTTGCTTGGTCGGTTTTTCCCATATTCTCTAGATCATCTGTATGATACATTTACTTCTATTTTGTGGATTTTTCTTTTCAGGAGCCCTTCTAGTGACGTTGAAAATCCTGGTAACAATTTGTACGTCACTGGTTTGTCACATAGAATTACAAGGAGAGAACTCGAGAAGCATTTTTCTGCTGAAGGAACAGTATGTCGCAGATCTTATTTTCTTCAAAATTTTTCTTTGGCTTGTACTTTTGATGGTGGTGTATGTGTTTTGTTCTTTCTGTTGGTGATTGAATTTATGGACTATTTTCTCTTTTCGTGAATGAATTTTTCATTCTCCAGGTGCTAGATGTTCATCTCGTGACTGATCCATGGACTAGAGAATCCCGTGGTTTTGGATTCATTACCATGTCTAGTAATGATGAGGCTGAACGTTGCATCAAATATCTAAATCGATCTGTACTTGAAGGTCGATTAATCACCGTGGAGAAGGTAAAAAATTAAACCAAGTACAATTTCATAGTCTCGAGATGTTTCTCATCATTAATGTTGTCTAAATTGTTCAACTTCAAATATTTACGGGATCTCTGGATGGTTTGTTGCAAGAGATTTGAGATTTTTGCTTCTGTGCACTTGAAGTTTTTTTGGCAGCAGGTTAGCTGTGTGTAGCAGCTCTTCATCAAACTCAAACTACAACTAATCAAACAAAACAAACACATGAAGTCTCAGAACATTGGGGTTGTATGCCCTGCATTTCTCTCTTTTATCTGCTAATTGATTCCTGTAGCCCTACTTTCCTCTCTACTGTGGCATGTTCCCCTGCTCTGCTGTTTTTCTTCAATTGACAATTGAATTGTCTCATTTTACATCTCTTATTTTCTGATAGGCTCGAAGACGGAGAGGTAGAACTCCGACTCCAGGGAGATACTTTGGACTTAGAACAGTCCGTGGTGAGCTTTTAATCTAATGTTTGATTTATTTCTATGAAGTATTGCGCTATTTTTTTTTTCTTTTGTCTAATCCTATGTTTATAACAGTGAGACGTAGATCGCGCAGCTACTCTTCTCGGCGTTCTCCCAGCTACTCTCCTTATAGCAGGAGCTTGAGCTGTTTGTCTAATTATTCATCTGACCGTAGCAGGAGCAGATCCCATTCTCCCAATCGACGCCGAAGATCAAATGACTCGCCATACCACCGCTATAGATCATACTCCCCTTATAGCCGCCGAAGATATGATTCTCCATACTATAGGCGTCATAGGTCGTATTCTCGATCGCACTCTCCATGTAGTAGGTCGCCTACCAGGAGACGTGACAGGTCGTATTCTCGATCCCACTCTCCATGTAGTAGGTTGCCTACCAGGAGACACGACAGGTCGTACTCACCTTACGACTATTGCTCCCCTGATCCATACTACAGAAGGCACAGGGATCGGTCAGTTTCTAGGAGTGTCTCACCAAAGGCAAGGGTTTCTAGTAGACGTTATTCCCGCAGTTATTCTCCTAGGCACCGTAGAAGCGCCTCGAGGAGTTACTCCCGTAGCAGAAGTTATTCACGCAGTCTTTCCCCTGAACGAAGCAGGAGATTCAGGAGCCATTCACACAGTATCTCTCCTGAACGAAGGAGCTCGAGGAGTCGCTCTCGCAGCCATACTCCAAGGCACCATAAGAGAGGAGGATATTCTGGTGGGAGTGGAAGCGTGGCTTCAAGGTCTGTTAGTCCTGCTTGATTTACTGATCTACTTCCTTGCTACTACCTTGATGGTCATGAATGTTGGTATTTTTAATTCACTCACTATTTTCTAA

mRNA sequence

TTTATTGCATGCGCTTTCGTGCGAGATATTACTAACGTTGAATACTCGGTTGCATTTCCTTTCGATTTTGGTTTTGCTTCTGCAGTTTGGGCGGTCGCAGATGTCGTACTCCAGAAGGTCTAGGTACTCCCGCTCTCCTTCATACAAACGATCGGTCTCAAGGTCCCTGTCAAGGTCAAGGAGCCGTTCAAGGAGCCCTTCTAGTGACGTTGAAAATCCTGGTAACAATTTGTACGTCACTGGTTTGTCACATAGAATTACAAGGAGAGAACTCGAGAAGCATTTTTCTGCTGAAGGAACAGTGCTAGATGTTCATCTCGTGACTGATCCATGGACTAGAGAATCCCGTGGTTTTGGATTCATTACCATGTCTAGTAATGATGAGGCTGAACGTTGCATCAAATATCTAAATCGATCTGTACTTGAAGGTCGATTAATCACCGTGGAGAAGAGATTTGAGATTTTTGCTTCTGTGCACTTGAAGTTTTTTTGGCAGCAGGCTCGAAGACGGAGAGGTAGAACTCCGACTCCAGGGAGATACTTTGGACTTAGAACAGTCCGTGGAGCAGATCCCATTCTCCCAATCGACGCCGAAGATCAAATGACTCGCCATACCACCGCTATAGATCATACTCCCCTTATAGCCGCCGAAGATATGATTCTCCATACTATAGGCGTCATAGGTCGTATTCTCGATCGCACTCTCCATGTAGTAGGTCGCCTACCAGGAGACGTGACAGGTCGTATTCTCGATCCCACTCTCCATGTAGTAGGTTGCCTACCAGGAGACACGACAGGTCGTACTCACCTTACGACTATTGCTCCCCTGATCCATACTACAGAAGGCACAGGGATCGGTCAGTTTCTAGGAGTGTCTCACCAAAGGCAAGGGTTTCTAGTAGACGTTATTCCCGCAGTTATTCTCCTAGGCACCGTAGAAGCGCCTCGAGGAGTTACTCCCGTAGCAGAAGTTATTCACGCAGTCTTTCCCCTGAACGAAGCAGGAGATTCAGGAGCCATTCACACAGTATCTCTCCTGAACGAAGGAGCTCGAGGAGTCGCTCTCGCAGCCATACTCCAAGGCACCATAAGAGAGGAGGATATTCTGGTGGGAGTGGAAGCGTGGCTTCAAGGTCTGTTAGTCCTGCTTGATTTACTGATCTACTTCCTTGCTACTACCTTGATGGTCATGAATGTTGGTATTTTTAATTCACTCACTATTTTCTAA

Coding sequence (CDS)

ATGTCGTACTCCAGAAGGTCTAGGTACTCCCGCTCTCCTTCATACAAACGATCGGTCTCAAGGTCCCTGTCAAGGTCAAGGAGCCGTTCAAGGAGCCCTTCTAGTGACGTTGAAAATCCTGGTAACAATTTGTACGTCACTGGTTTGTCACATAGAATTACAAGGAGAGAACTCGAGAAGCATTTTTCTGCTGAAGGAACAGTGCTAGATGTTCATCTCGTGACTGATCCATGGACTAGAGAATCCCGTGGTTTTGGATTCATTACCATGTCTAGTAATGATGAGGCTGAACGTTGCATCAAATATCTAAATCGATCTGTACTTGAAGGTCGATTAATCACCGTGGAGAAGAGATTTGAGATTTTTGCTTCTGTGCACTTGAAGTTTTTTTGGCAGCAGGCTCGAAGACGGAGAGGTAGAACTCCGACTCCAGGGAGATACTTTGGACTTAGAACAGTCCGTGGAGCAGATCCCATTCTCCCAATCGACGCCGAAGATCAAATGACTCGCCATACCACCGCTATAGATCATACTCCCCTTATAGCCGCCGAAGATATGATTCTCCATACTATAGGCGTCATAGGTCGTATTCTCGATCGCACTCTCCATGTAGTAGGTCGCCTACCAGGAGACGTGACAGGTCGTATTCTCGATCCCACTCTCCATGTAGTAGGTTGCCTACCAGGAGACACGACAGGTCGTACTCACCTTACGACTATTGCTCCCCTGATCCATACTACAGAAGGCACAGGGATCGGTCAGTTTCTAGGAGTGTCTCACCAAAGGCAAGGGTTTCTAGTAGACGTTATTCCCGCAGTTATTCTCCTAGGCACCGTAGAAGCGCCTCGAGGAGTTACTCCCGTAGCAGAAGTTATTCACGCAGTCTTTCCCCTGAACGAAGCAGGAGATTCAGGAGCCATTCACACAGTATCTCTCCTGAACGAAGGAGCTCGAGGAGTCGCTCTCGCAGCCATACTCCAAGGCACCATAAGAGAGGAGGATATTCTGGTGGGAGTGGAAGCGTGGCTTCAAGGTCTGTTAGTCCTGCTTGATTTACTGATCTACTTCCTTGCTACTACCTTGATGGTCATGAATGTTGGTATTTTTAATTCACTCACTATTTTCTAA

Protein sequence

MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKRFEIFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVRGADPILPIDAEDQMTRHTTAIDHTPLIAAEDMILHTIGVIGRILDRTLHVVGRLPGDVTGRILDPTLHVVGCLPGDTTGRTHLTTIAPLIHTTEGTGIGQFLGVSHQRQGFLVDVIPAVILLGTVEAPRGVTPVAEVIHAVFPLNEAGDSGAIHTVSLLNEGARGVALAAILQGTIREEDILVGVEAWLQGLLVLLDLLIYFLATTLMVMNVGIFNSLTIF

Homology

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BLAST of Carg12412 vs. NCBI nr
Match: KAG7036969.1 (Serine/arginine-rich splicing factor SR45a [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 721.8 bits (1862), Expect = 2.9e-204
Identity = 375/375 (100.00%), Postives = 375/375 (100.00%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 60
           MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKRFE 120
           HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKRFE
Sbjct: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKRFE 120

Query: 121 IFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVRGADPILPIDAEDQMTRHTTAIDHTPL 180
           IFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVRGADPILPIDAEDQMTRHTTAIDHTPL
Sbjct: 121 IFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVRGADPILPIDAEDQMTRHTTAIDHTPL 180

Query: 181 IAAEDMILHTIGVIGRILDRTLHVVGRLPGDVTGRILDPTLHVVGCLPGDTTGRTHLTTI 240
           IAAEDMILHTIGVIGRILDRTLHVVGRLPGDVTGRILDPTLHVVGCLPGDTTGRTHLTTI
Sbjct: 181 IAAEDMILHTIGVIGRILDRTLHVVGRLPGDVTGRILDPTLHVVGCLPGDTTGRTHLTTI 240

Query: 241 APLIHTTEGTGIGQFLGVSHQRQGFLVDVIPAVILLGTVEAPRGVTPVAEVIHAVFPLNE 300
           APLIHTTEGTGIGQFLGVSHQRQGFLVDVIPAVILLGTVEAPRGVTPVAEVIHAVFPLNE
Sbjct: 241 APLIHTTEGTGIGQFLGVSHQRQGFLVDVIPAVILLGTVEAPRGVTPVAEVIHAVFPLNE 300

Query: 301 AGDSGAIHTVSLLNEGARGVALAAILQGTIREEDILVGVEAWLQGLLVLLDLLIYFLATT 360
           AGDSGAIHTVSLLNEGARGVALAAILQGTIREEDILVGVEAWLQGLLVLLDLLIYFLATT
Sbjct: 301 AGDSGAIHTVSLLNEGARGVALAAILQGTIREEDILVGVEAWLQGLLVLLDLLIYFLATT 360

Query: 361 LMVMNVGIFNSLTIF 376
           LMVMNVGIFNSLTIF
Sbjct: 361 LMVMNVGIFNSLTIF 375

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BLAST of Carg12412 vs. NCBI nr
Match: KAA0031790.1 (serine/arginine-rich splicing factor SR45a-like [Cucumis melo var. makuwa])

HSP 1 Score: 302.4 bits (773), Expect = 5.5e-78
Identity = 190/311 (61.09%), Postives = 199/311 (63.99%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 60
           MSYSRRSRYSRSPS+KRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLS RITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKRFE 120
           HFSAEGTVLDVHLV DP TRESRGFGFITMSSNDEAE CIKYLNRSVLEGR+ITVEK   
Sbjct: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEK--- 120

Query: 121 IFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVR-------------------------- 180
                        ARRRRGRTPTPGRY GLRTV                           
Sbjct: 121 -------------ARRRRGRTPTPGRYLGLRTVHGREATHLAVLPATLHIGEALAALLII 180

Query: 181 -----GADPILPIDAEDQMTRHTTAIDHTPLIAAEDMILHTIGVIGRILDRTLHVVGRLP 240
                G DP+   D  D M    T +DHT LIA EDMILHTIG    IL  T+ ++    
Sbjct: 181 HLTVAGVDPVPSTDIVDHMV-PLTIVDHT-LIAGEDMILHTIG-DDMILQTTIGII---- 240

Query: 241 GDVTGRILDPTLHVVGCLPGDTTGRTHLTTIAPLIHTTEGTGIGQFLGVSHQRQGFLVDV 281
               G ILDP   + G   G  TG THL    PLI TTEGTG GQFLG  HQ QG    +
Sbjct: 241 ----GHILDPAHRIGG---GAATGHTHLMITIPLILTTEGTGTGQFLGAFHQSQG-TAGI 280

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BLAST of Carg12412 vs. NCBI nr
Match: TYJ97341.1 (serine/arginine-rich splicing factor SR45a-like [Cucumis melo var. makuwa])

HSP 1 Score: 301.2 bits (770), Expect = 1.2e-77
Identity = 189/311 (60.77%), Postives = 199/311 (63.99%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 60
           MSYSRRSRYSRSPS+KRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLS RITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKRFE 120
           HFSAEGTVLDVHL+ DP TRESRGFGFITMSSNDEAE CIKYLNRSVLEGR+ITVEK   
Sbjct: 61  HFSAEGTVLDVHLLADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEK--- 120

Query: 121 IFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVR-------------------------- 180
                        ARRRRGRTPTPGRY GLRTV                           
Sbjct: 121 -------------ARRRRGRTPTPGRYLGLRTVHGREATHLAVLPATLHIGEALAALLII 180

Query: 181 -----GADPILPIDAEDQMTRHTTAIDHTPLIAAEDMILHTIGVIGRILDRTLHVVGRLP 240
                G DP+   D  D M    T +DHT LIA EDMILHTIG    IL  T+ ++    
Sbjct: 181 HLTVAGVDPVPSTDIVDHMV-PLTIVDHT-LIAGEDMILHTIG-DDMILQTTIGII---- 240

Query: 241 GDVTGRILDPTLHVVGCLPGDTTGRTHLTTIAPLIHTTEGTGIGQFLGVSHQRQGFLVDV 281
               G ILDP   + G   G  TG THL    PLI TTEGTG GQFLG  HQ QG    +
Sbjct: 241 ----GHILDPAHRIGG---GAATGHTHLMITIPLILTTEGTGTGQFLGAFHQSQG-TAGI 280

[Close]

BLAST of Carg12412 vs. NCBI nr
Match: KAG6607292.1 (Serine/arginine-rich splicing factor SR45a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 258.1 bits (658), Expect = 1.2e-64
Identity = 138/154 (89.61%), Postives = 138/154 (89.61%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 60
           MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK
Sbjct: 33  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 92

Query: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKRFE 120
           HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEK   
Sbjct: 93  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEK--- 152

Query: 121 IFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVR 155
                        ARRRRGRTPTPGRYFGLRTVR
Sbjct: 153 -------------ARRRRGRTPTPGRYFGLRTVR 170

[Close]

BLAST of Carg12412 vs. NCBI nr
Match: XP_022998028.1 (serine/arginine-rich splicing factor SR45a-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 257.3 bits (656), Expect = 2.0e-64
Identity = 137/154 (88.96%), Postives = 138/154 (89.61%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 60
           MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKRFE 120
           HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGR+ITVEK   
Sbjct: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEK--- 120

Query: 121 IFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVR 155
                        ARRRRGRTPTPGRYFGLRTVR
Sbjct: 121 -------------ARRRRGRTPTPGRYFGLRTVR 138

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BLAST of Carg12412 vs. ExPASy Swiss-Prot
Match: Q84TH4 (Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana OX=3702 GN=SR45A PE=1 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 4.2e-44
Identity = 103/158 (65.19%), Postives = 116/158 (73.42%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSHRITRRE 60
           MSYSRRSRYS S S Y +   RS+SRS SRS  RS SSD ENPGN+LYVTGLSHR+T R+
Sbjct: 31  MSYSRRSRYSPSLSPYDKRRGRSVSRSLSRSPTRSVSSDAENPGNSLYVTGLSHRVTERD 90

Query: 61  LEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEK 120
           LE HF+ EG V DVHLV DPWTRESRGFGFI+M S  +A RCI+ L+ SVL+GR+ITVEK
Sbjct: 91  LEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEK 150

Query: 121 RFEIFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVRG 156
                           ARRRRGRTPTPG+Y GLRT RG
Sbjct: 151 ----------------ARRRRGRTPTPGKYLGLRTARG 172

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BLAST of Carg12412 vs. ExPASy Swiss-Prot
Match: Q10422 (Uncharacterized RNA-binding protein C25G10.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC25G10.01 PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.7e-13
Identity = 45/130 (34.62%), Postives = 71/130 (54.62%), Query Frame = 0


Query: 20  SRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWT 79
           + S +  +   +S     EN GN+L+V+G++ R+   EL++ FS  GTV  V ++ +P T
Sbjct: 79  NESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVT 138

Query: 80  RESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKRFEIFASVHLKFFWQQARRRRG 139
           + SRGFGF++ S+ +EA   I  LN     GR++ V+K                A+R R 
Sbjct: 139 KASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQK----------------AKRSRP 192

Query: 140 RTPTPGRYFG 150
            +PTPG+Y G
Sbjct: 199 HSPTPGKYMG 192

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BLAST of Carg12412 vs. ExPASy Swiss-Prot
Match: Q80YR5 (Scaffold attachment factor B2 OS=Mus musculus OX=10090 GN=Safb2 PE=1 SV=2)

HSP 1 Score: 72.4 bits (176), Expect = 1.2e-11
Identity = 34/77 (44.16%), Postives = 53/77 (68.83%), Query Frame = 0


Query: 41  GNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCI 100
           G NL+V+GLS      +L+  FS  G V+   +VT+  +  +R +GF+TMS++DEA +CI
Sbjct: 450 GRNLWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSDEATKCI 509

Query: 101 KYLNRSVLEGRLITVEK 118
            +L+R+ L GR+I+VEK
Sbjct: 510 SHLHRTELHGRMISVEK 526

[Close]

BLAST of Carg12412 vs. ExPASy Swiss-Prot
Match: Q14151 (Scaffold attachment factor B2 OS=Homo sapiens OX=9606 GN=SAFB2 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.7e-11
Identity = 34/77 (44.16%), Postives = 53/77 (68.83%), Query Frame = 0


Query: 41  GNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCI 100
           G NL+V+GLS      +L+  FS  G V+   +VT+  +  +R +GF+TMS++DEA +CI
Sbjct: 406 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEATKCI 465

Query: 101 KYLNRSVLEGRLITVEK 118
            +L+R+ L GR+I+VEK
Sbjct: 466 SHLHRTELHGRMISVEK 482

[Close]

BLAST of Carg12412 vs. ExPASy Swiss-Prot
Match: Q3ZBT6 (Transformer-2 protein homolog beta OS=Bos taurus OX=9913 GN=TRA2B PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.1e-09
Identity = 62/170 (36.47%), Postives = 75/170 (44.12%), Query Frame = 0


Query: 6   RSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVE---------------------NPGNN- 65
           RSR S    Y RS SRS S  RSRSRS S D                       NP  N 
Sbjct: 59  RSRRSSRRHYTRSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMSTRRRHVGNRANPDPNC 118

Query: 66  -LYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKY 125
            L V GLS   T R+L + FS  G + DV +V D  +R SRGF F+   + D+A+   + 
Sbjct: 119 CLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER 178

Query: 126 LNRSVLEGRLITVEKRFEIFASVHLKFFWQQARRRRGRTPTPGRYFGLRT 153
            N   L+GR I V+  F I               +R  TPTPG Y G  T
Sbjct: 179 ANGMELDGRRIRVD--FSI--------------TKRPHTPTPGIYMGRPT 212

[Close]

BLAST of Carg12412 vs. ExPASy TrEMBL
Match: A0A5A7SM07 (Serine/arginine-rich splicing factor SR45a-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00310 PE=4 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 2.7e-78
Identity = 190/311 (61.09%), Postives = 199/311 (63.99%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 60
           MSYSRRSRYSRSPS+KRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLS RITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKRFE 120
           HFSAEGTVLDVHLV DP TRESRGFGFITMSSNDEAE CIKYLNRSVLEGR+ITVEK   
Sbjct: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEK--- 120

Query: 121 IFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVR-------------------------- 180
                        ARRRRGRTPTPGRY GLRTV                           
Sbjct: 121 -------------ARRRRGRTPTPGRYLGLRTVHGREATHLAVLPATLHIGEALAALLII 180

Query: 181 -----GADPILPIDAEDQMTRHTTAIDHTPLIAAEDMILHTIGVIGRILDRTLHVVGRLP 240
                G DP+   D  D M    T +DHT LIA EDMILHTIG    IL  T+ ++    
Sbjct: 181 HLTVAGVDPVPSTDIVDHMV-PLTIVDHT-LIAGEDMILHTIG-DDMILQTTIGII---- 240

Query: 241 GDVTGRILDPTLHVVGCLPGDTTGRTHLTTIAPLIHTTEGTGIGQFLGVSHQRQGFLVDV 281
               G ILDP   + G   G  TG THL    PLI TTEGTG GQFLG  HQ QG    +
Sbjct: 241 ----GHILDPAHRIGG---GAATGHTHLMITIPLILTTEGTGTGQFLGAFHQSQG-TAGI 280

[Close]

BLAST of Carg12412 vs. ExPASy TrEMBL
Match: A0A5D3BFE7 (Serine/arginine-rich splicing factor SR45a-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G001490 PE=4 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 6.0e-78
Identity = 189/311 (60.77%), Postives = 199/311 (63.99%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 60
           MSYSRRSRYSRSPS+KRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLS RITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKRFE 120
           HFSAEGTVLDVHL+ DP TRESRGFGFITMSSNDEAE CIKYLNRSVLEGR+ITVEK   
Sbjct: 61  HFSAEGTVLDVHLLADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEK--- 120

Query: 121 IFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVR-------------------------- 180
                        ARRRRGRTPTPGRY GLRTV                           
Sbjct: 121 -------------ARRRRGRTPTPGRYLGLRTVHGREATHLAVLPATLHIGEALAALLII 180

Query: 181 -----GADPILPIDAEDQMTRHTTAIDHTPLIAAEDMILHTIGVIGRILDRTLHVVGRLP 240
                G DP+   D  D M    T +DHT LIA EDMILHTIG    IL  T+ ++    
Sbjct: 181 HLTVAGVDPVPSTDIVDHMV-PLTIVDHT-LIAGEDMILHTIG-DDMILQTTIGII---- 240

Query: 241 GDVTGRILDPTLHVVGCLPGDTTGRTHLTTIAPLIHTTEGTGIGQFLGVSHQRQGFLVDV 281
               G ILDP   + G   G  TG THL    PLI TTEGTG GQFLG  HQ QG    +
Sbjct: 241 ----GHILDPAHRIGG---GAATGHTHLMITIPLILTTEGTGTGQFLGAFHQSQG-TAGI 280

[Close]

BLAST of Carg12412 vs. ExPASy TrEMBL
Match: A0A6J1KD79 (serine/arginine-rich splicing factor SR45a-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111492800 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 9.9e-65
Identity = 137/154 (88.96%), Postives = 138/154 (89.61%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 60
           MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKRFE 120
           HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGR+ITVEK   
Sbjct: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEK--- 120

Query: 121 IFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVR 155
                        ARRRRGRTPTPGRYFGLRTVR
Sbjct: 121 -------------ARRRRGRTPTPGRYFGLRTVR 138

[Close]

BLAST of Carg12412 vs. ExPASy TrEMBL
Match: A0A6J1KFN0 (serine/arginine-rich splicing factor SR45a-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111492800 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 9.9e-65
Identity = 137/154 (88.96%), Postives = 138/154 (89.61%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 60
           MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKRFE 120
           HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGR+ITVEK   
Sbjct: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEK--- 120

Query: 121 IFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVR 155
                        ARRRRGRTPTPGRYFGLRTVR
Sbjct: 121 -------------ARRRRGRTPTPGRYFGLRTVR 138

[Close]

BLAST of Carg12412 vs. ExPASy TrEMBL
Match: A0A6J1GAU6 (serine/arginine-rich splicing factor SR45a-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111452466 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 1.7e-64
Identity = 137/153 (89.54%), Postives = 137/153 (89.54%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 60
           MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKRFE 120
           HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEK   
Sbjct: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEK--- 120

Query: 121 IFASVHLKFFWQQARRRRGRTPTPGRYFGLRTV 154
                        ARRRRGRTPTPGRYFGLRTV
Sbjct: 121 -------------ARRRRGRTPTPGRYFGLRTV 137

[Close]

BLAST of Carg12412 vs. TAIR 10
Match: AT1G07350.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 180.3 bits (456), Expect = 3.0e-45
Identity = 103/158 (65.19%), Postives = 116/158 (73.42%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSHRITRRE 60
           MSYSRRSRYS S S Y +   RS+SRS SRS  RS SSD ENPGN+LYVTGLSHR+T R+
Sbjct: 31  MSYSRRSRYSPSLSPYDKRRGRSVSRSLSRSPTRSVSSDAENPGNSLYVTGLSHRVTERD 90

Query: 61  LEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEK 120
           LE HF+ EG V DVHLV DPWTRESRGFGFI+M S  +A RCI+ L+ SVL+GR+ITVEK
Sbjct: 91  LEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEK 150

Query: 121 RFEIFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVRG 156
                           ARRRRGRTPTPG+Y GLRT RG
Sbjct: 151 ----------------ARRRRGRTPTPGKYLGLRTARG 172

[Close]

BLAST of Carg12412 vs. TAIR 10
Match: AT1G07350.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 152.9 bits (385), Expect = 5.1e-37
Identity = 88/136 (64.71%), Postives = 100/136 (73.53%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSHRITRRE 60
           MSYSRRSRYS S S Y +   RS+SRS SRS  RS SSD ENPGN+LYVTGLSHR+T R+
Sbjct: 1   MSYSRRSRYSPSLSPYDKRRGRSVSRSLSRSPTRSVSSDAENPGNSLYVTGLSHRVTERD 60

Query: 61  LEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEK 120
           LE HF+ EG V DVHLV DPWTRESRGFGFI+M S  +A RCI+ L+ SVL+GR+ITVE 
Sbjct: 61  LEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVE- 120

Query: 121 RFEIFASVHLKFFWQQ 134
                     KF WQQ
Sbjct: 121 ----------KFLWQQ 125

[Close]

BLAST of Carg12412 vs. TAIR 10
Match: AT4G35785.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 147.9 bits (372), Expect = 1.6e-35
Identity = 88/156 (56.41%), Postives = 103/156 (66.03%), Query Frame = 0


Query: 2   SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEKH 61
           S SR    SRS S  R VS S SR RSRSRS  S+VENPG  LYVTGLS R+T ++LE H
Sbjct: 31  SRSRPRLRSRSRSLPRPVSPSRSRGRSRSRSRGSEVENPGTTLYVTGLSTRVTDKDLEAH 90

Query: 62  FSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKRFEI 121
           F+ EG V    LV +P TR SRGF F+TMSS  +AERCIKYLN+SVLEGR ITVE+    
Sbjct: 91  FAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYITVER---- 150

Query: 122 FASVHLKFFWQQARRRRGRTPTPGRYFGLRTVRGAD 158
                       +RR+R RTPTPG Y GL++ R +D
Sbjct: 151 ------------SRRKRPRTPTPGHYLGLKSSRDSD 170

[Close]

BLAST of Carg12412 vs. TAIR 10
Match: AT4G35785.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 143.3 bits (360), Expect = 4.0e-34
Identity = 88/157 (56.05%), Postives = 103/157 (65.61%), Query Frame = 0


Query: 2   SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPS-SDVENPGNNLYVTGLSHRITRRELEK 61
           S SR    SRS S  R VS S SR RSRSRS   S+VENPG  LYVTGLS R+T ++LE 
Sbjct: 31  SRSRPRLRSRSRSLPRPVSPSRSRGRSRSRSRGRSEVENPGTTLYVTGLSTRVTDKDLEA 90

Query: 62  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKRFE 121
           HF+ EG V    LV +P TR SRGF F+TMSS  +AERCIKYLN+SVLEGR ITVE+   
Sbjct: 91  HFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYITVER--- 150

Query: 122 IFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVRGAD 158
                        +RR+R RTPTPG Y GL++ R +D
Sbjct: 151 -------------SRRKRPRTPTPGHYLGLKSSRDSD 171

[Close]

BLAST of Carg12412 vs. TAIR 10
Match: AT4G35785.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 124.4 bits (311), Expect = 1.9e-28
Identity = 74/118 (62.71%), Postives = 85/118 (72.03%), Query Frame = 0


Query: 2   SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPS-SDVENPGNNLYVTGLSHRITRRELEK 61
           S SR    SRS S  R VS S SR RSRSRS   S+VENPG  LYVTGLS R+T ++LE 
Sbjct: 31  SRSRPRLRSRSRSLPRPVSPSRSRGRSRSRSRGRSEVENPGTTLYVTGLSTRVTDKDLEA 90

Query: 62  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKR 119
           HF+ EG V    LV +P TR SRGF F+TMSS  +AERCIKYLN+SVLEGR ITVE++
Sbjct: 91  HFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYITVERK 148

The following BLAST results are available for this feature:

BLAST of Carg12412 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7036969.1	2.9e-204	100.00	Serine/arginine-rich splicing factor SR45a [Cucurbita argyrosperma subsp. argyro...	[more]
KAA0031790.1	5.5e-78	61.09	serine/arginine-rich splicing factor SR45a-like [Cucumis melo var. makuwa]	[more]
TYJ97341.1	1.2e-77	60.77	serine/arginine-rich splicing factor SR45a-like [Cucumis melo var. makuwa]	[more]
KAG6607292.1	1.2e-64	89.61	Serine/arginine-rich splicing factor SR45a, partial [Cucurbita argyrosperma subs...	[more]
XP_022998028.1	2.0e-64	88.96	serine/arginine-rich splicing factor SR45a-like isoform X1 [Cucurbita maxima]	[more]

BLAST of Carg12412 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84TH4	4.2e-44	65.19	Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]
Q10422	1.7e-13	34.62	Uncharacterized RNA-binding protein C25G10.01 OS=Schizosaccharomyces pombe (stra...	[more]
Q80YR5	1.2e-11	44.16	Scaffold attachment factor B2 OS=Mus musculus OX=10090 GN=Safb2 PE=1 SV=2	[more]
Q14151	2.7e-11	44.16	Scaffold attachment factor B2 OS=Homo sapiens OX=9606 GN=SAFB2 PE=1 SV=1	[more]
Q3ZBT6	1.1e-09	36.47	Transformer-2 protein homolog beta OS=Bos taurus OX=9913 GN=TRA2B PE=2 SV=1	[more]

BLAST of Carg12412 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SM07	2.7e-78	61.09	Serine/arginine-rich splicing factor SR45a-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3BFE7	6.0e-78	60.77	Serine/arginine-rich splicing factor SR45a-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A6J1KD79	9.9e-65	88.96	serine/arginine-rich splicing factor SR45a-like isoform X2 OS=Cucurbita maxima O...	[more]
A0A6J1KFN0	9.9e-65	88.96	serine/arginine-rich splicing factor SR45a-like isoform X1 OS=Cucurbita maxima O...	[more]
A0A6J1GAU6	1.7e-64	89.54	serine/arginine-rich splicing factor SR45a-like isoform X1 OS=Cucurbita moschata...	[more]

BLAST of Carg12412 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07350.1	3.0e-45	65.19	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G07350.2	5.1e-37	64.71	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G35785.1	1.6e-35	56.41	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G35785.2	4.0e-34	56.05	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G35785.3	1.9e-28	62.71	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 43..116 e-value: 2.3E-20 score: 83.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 44..113 e-value: 8.8E-15 score: 54.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 42..120 score: 16.107859
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..120 e-value: 1.9E-25 score: 91.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43
None	No IPR available	PANTHER	PTHR15241:SF351	SERINE/ARGININE-RICH SPLICING FACTOR SR45A-LIKE ISOFORM X1	coord: 9..156
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 9..156
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 30..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12412-RA	Carg12412-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048026	positive regulation of mRNA splicing, via spliceosome
cellular_component	GO:0005681	spliceosomal complex
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding