Carg12399 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg12399
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Copper transporter
Location	Carg_Chr01: 3388971 .. 3389357 (+)
RNA-Seq Expression	Carg12399
Synteny	Carg12399

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATTCCACATGACATTTTTCTGGGGAAAGTCGGCGGAGATTCTGTTCGCCGGCTGGCCTGGCCGGAGCTCACTCTCTTACGCCATCGCCTTAGTCTTCGTCTTTCTCGTAGCCTTCGCCGTGGAGTGGCTGTCGCACACTAAACTCACCGCCTCTGTCGCCGATGACGTCTTCGCCGGCTTTGTTCAGACCGCCCTGTACGGCGTCCGGGTGGGGTTGGCTTTTGTCGTCATGCTGGCCGTCATGTCATTCAATGTCGGAGTCCTGCTTGCGGCGGTGGCCGGGTATTCGGTCGGGTTCTTGGTTTATGGGAGCCGGGTTTTTAATAGATCCAAAATTGACCTAAATTTGAATATGTCTGATATACCACCGCTTAATTGTTAA

mRNA sequence

ATGGAATTCCACATGACATTTTTCTGGGGAAAGTCGGCGGAGATTCTGTTCGCCGGCTGGCCTGGCCGGAGCTCACTCTCTTACGCCATCGCCTTAGTCTTCGTCTTTCTCGTAGCCTTCGCCGTGGAGTGGCTGTCGCACACTAAACTCACCGCCTCTGTCGCCGATGACGTCTTCGCCGGCTTTGTTCAGACCGCCCTGTACGGCGTCCGGGTGGGGTTGGCTTTTGTCGTCATGCTGGCCGTCATGTCATTCAATGTCGGAGTCCTGCTTGCGGCGGTGGCCGGGTATTCGGTCGGGTTCTTGGTTTATGGGAGCCGGGTTTTTAATAGATCCAAAATTGACCTAAATTTGAATATGTCTGATATACCACCGCTTAATTGTTAA

Coding sequence (CDS)

ATGGAATTCCACATGACATTTTTCTGGGGAAAGTCGGCGGAGATTCTGTTCGCCGGCTGGCCTGGCCGGAGCTCACTCTCTTACGCCATCGCCTTAGTCTTCGTCTTTCTCGTAGCCTTCGCCGTGGAGTGGCTGTCGCACACTAAACTCACCGCCTCTGTCGCCGATGACGTCTTCGCCGGCTTTGTTCAGACCGCCCTGTACGGCGTCCGGGTGGGGTTGGCTTTTGTCGTCATGCTGGCCGTCATGTCATTCAATGTCGGAGTCCTGCTTGCGGCGGTGGCCGGGTATTCGGTCGGGTTCTTGGTTTATGGGAGCCGGGTTTTTAATAGATCCAAAATTGACCTAAATTTGAATATGTCTGATATACCACCGCTTAATTGTTAA

Protein sequence

MEFHMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFAGFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLNMSDIPPLNC

Homology

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BLAST of Carg12399 vs. NCBI nr
Match: XP_023525766.1 (copper transporter 1-like [Cucurbita pepo subsp. pepo] >KAG7036956.1 Copper transporter 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 247.7 bits (631), Expect = 5.5e-62
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MEFHMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFA 60
           MEFHMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFA
Sbjct: 1   MEFHMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFA 60

Query: 61  GFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLNM 120
           GFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLNM
Sbjct: 61  GFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLNM 120

Query: 121 SDIPPLNC 129
           SDIPPLNC
Sbjct: 121 SDIPPLNC 128

[Close]

BLAST of Carg12399 vs. NCBI nr
Match: XP_022998910.1 (copper transporter 1-like [Cucurbita maxima])

HSP 1 Score: 247.3 bits (630), Expect = 7.2e-62
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MEFHMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFA 60
           MEFHMTFFWGKSAEILFAGWPGRSSLSYAIALVF+FLVAFAVEWLSHTKLTASVADDVFA
Sbjct: 1   MEFHMTFFWGKSAEILFAGWPGRSSLSYAIALVFIFLVAFAVEWLSHTKLTASVADDVFA 60

Query: 61  GFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLNM 120
           GFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLNM
Sbjct: 61  GFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLNM 120

Query: 121 SDIPPLNC 129
           SDIPPLNC
Sbjct: 121 SDIPPLNC 128

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BLAST of Carg12399 vs. NCBI nr
Match: XP_022948639.1 (copper transporter 1-like [Cucurbita moschata])

HSP 1 Score: 246.5 bits (628), Expect = 1.2e-61
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MEFHMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFA 60
           MEFHMTFFWGKSAEILFAGWPGR+SLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFA
Sbjct: 1   MEFHMTFFWGKSAEILFAGWPGRNSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFA 60

Query: 61  GFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLNM 120
           GFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLNM
Sbjct: 61  GFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLNM 120

Query: 121 SDIPPLNC 129
           SDIPPLNC
Sbjct: 121 SDIPPLNC 128

[Close]

BLAST of Carg12399 vs. NCBI nr
Match: KAG6607279.1 (Copper transporter 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 202.6 bits (514), Expect = 2.0e-48
Identity = 106/107 (99.07%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MEFHMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFA 60
           MEFHMTFFWGKSAEILFAGWPGR+SLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFA
Sbjct: 1   MEFHMTFFWGKSAEILFAGWPGRNSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFA 60

Query: 61  GFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSR 108
           GFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSR
Sbjct: 61  GFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSR 107

[Close]

BLAST of Carg12399 vs. NCBI nr
Match: KAA0031772.1 (putative Copper transporter [Cucumis melo var. makuwa])

HSP 1 Score: 194.9 bits (494), Expect = 4.3e-46
Identity = 97/130 (74.62%), Postives = 112/130 (86.15%), Query Frame = 0


Query: 1   MEFHMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFA 60
           ME HMTF+WGK+ EILF GWPGRS  SY +AL+FVFL+AF VEWLSHTK T  V  ++ A
Sbjct: 3   METHMTFYWGKTVEILFVGWPGRSFFSYTVALIFVFLLAFTVEWLSHTKFTTLVVGNLTA 62

Query: 61  GFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKID--LNL 120
           G VQT LYGVRVGLAF+VMLAVMS+NVGVLLAAV GYS+GFLVYGSRVF+RSK+D  LNL
Sbjct: 63  GLVQTILYGVRVGLAFIVMLAVMSYNVGVLLAAVTGYSMGFLVYGSRVFSRSKVDQNLNL 122

Query: 121 NMSDIPPLNC 129
           ++SD+PPLNC
Sbjct: 123 DLSDLPPLNC 132

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BLAST of Carg12399 vs. ExPASy Swiss-Prot
Match: Q39065 (Copper transporter 1 OS=Arabidopsis thaliana OX=3702 GN=COPT1 PE=2 SV=2)

HSP 1 Score: 132.9 bits (333), Expect = 2.6e-30
Identity = 67/131 (51.15%), Postives = 90/131 (68.70%), Query Frame = 0


Query: 1   MEFHMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDV-- 60
           M  HMTFFWGK+ E+LF+GWPG SS  YA+ L+FVF +A   EWL+H+ L      D   
Sbjct: 40  MMMHMTFFWGKNTEVLFSGWPGTSSGMYALCLIFVFFLAVLTEWLAHSSLLRGSTGDSAN 99

Query: 61  -FAGFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLN 120
             AG +QTA+Y +R+GLA++VMLAVMSFN GV L A+AG++VGF+++GS+ F  +  D  
Sbjct: 100 RAAGLIQTAVYTLRIGLAYLVMLAVMSFNAGVFLVALAGHAVGFMLFGSQTFRNTSDDRK 159

Query: 121 LNMSDIPPLNC 129
            N   +PP  C
Sbjct: 160 TNY--VPPSGC 168

[Close]

BLAST of Carg12399 vs. ExPASy Swiss-Prot
Match: Q9STG2 (Copper transporter 2 OS=Arabidopsis thaliana OX=3702 GN=COPT2 PE=2 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 6.0e-27
Identity = 60/116 (51.72%), Postives = 82/116 (70.69%), Query Frame = 0


Query: 1   MEFHMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTK-LTASVADDVF 60
           M  HMTFFWGK+ E+LF+GWPG SS  YA+ L+ +FL+A   EWL+H+  L  S + +  
Sbjct: 28  MMMHMTFFWGKNTEVLFSGWPGTSSGMYALCLIVIFLLAVIAEWLAHSPILRVSGSTNRA 87

Query: 61  AGFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKID 116
           AG  QTA+Y ++ GL+++VMLAVMSFN GV + A+AGY VGF ++GS  F +   D
Sbjct: 88  AGLAQTAVYTLKTGLSYLVMLAVMSFNAGVFIVAIAGYGVGFFLFGSTTFKKPSDD 143

[Close]

BLAST of Carg12399 vs. ExPASy Swiss-Prot
Match: Q8GWP3 (Copper transporter 6 OS=Arabidopsis thaliana OX=3702 GN=COPT6 PE=2 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.5e-25
Identity = 59/113 (52.21%), Postives = 79/113 (69.91%), Query Frame = 0


Query: 4   HMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFA-GF 63
           HMTFFWGK+ EILF+GWPG S   Y + L+ VFL+A  VEWL+H+ +         A G 
Sbjct: 26  HMTFFWGKNTEILFSGWPGTSLGMYVLCLIVVFLLAVIVEWLAHSSILRGRGSTSRAKGL 85

Query: 64  VQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKID 116
           VQTA+Y ++ GLA++VMLAVMSFN GV + A+AG++VGF+++GS  F     D
Sbjct: 86  VQTAVYTLKTGLAYLVMLAVMSFNGGVFIVAIAGFAVGFMLFGSTAFKNPSDD 138

[Close]

BLAST of Carg12399 vs. ExPASy Swiss-Prot
Match: Q9FGU8 (Copper transporter 3 OS=Arabidopsis thaliana OX=3702 GN=COPT3 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.8e-21
Identity = 52/106 (49.06%), Postives = 72/106 (67.92%), Query Frame = 0


Query: 4   HMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFAGFV 63
           HMTFFWGK+ E+LF GWPG S   Y + L  +F+++   E LS      S    +  G +
Sbjct: 31  HMTFFWGKTTEVLFDGWPGTSLKMYWVCLAVIFVISAFSECLSRCGFMKSGPASLGGGLL 90

Query: 64  QTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVF 110
           QTA+Y VR  L+++VMLAVMSFN GV +AA+AG+ +GF+++GSR F
Sbjct: 91  QTAVYTVRAALSYLVMLAVMSFNGGVFVAAMAGFGLGFMIFGSRAF 136

[Close]

BLAST of Carg12399 vs. ExPASy Swiss-Prot
Match: Q8SAA5 (Copper transporter 4 OS=Arabidopsis thaliana OX=3702 GN=COPT4 PE=2 SV=2)

HSP 1 Score: 97.1 bits (240), Expect = 1.6e-19
Identity = 50/114 (43.86%), Postives = 75/114 (65.79%), Query Frame = 0


Query: 4   HMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASV---ADDVFA 63
           H TF+WG + ++LF+GWPG     YA+AL+FVF +AF  EWL+     +S+   AD +  
Sbjct: 31  HPTFYWGYNCQVLFSGWPGSDRGMYALALIFVFFLAFLAEWLARCSDASSIKQGADKLAK 90

Query: 64  GFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKI 115
              +TA+Y V+ G +++V+LAV+SFN GV LAA+ G+++GF V+  R F    I
Sbjct: 91  VAFRTAMYTVKSGFSYLVILAVVSFNGGVFLAAIFGHALGFAVFRGRAFRNRDI 144

[Close]

BLAST of Carg12399 vs. ExPASy TrEMBL
Match: A0A6J1KDT9 (Copper transporter OS=Cucurbita maxima OX=3661 GN=LOC111493433 PE=3 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 3.5e-62
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MEFHMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFA 60
           MEFHMTFFWGKSAEILFAGWPGRSSLSYAIALVF+FLVAFAVEWLSHTKLTASVADDVFA
Sbjct: 1   MEFHMTFFWGKSAEILFAGWPGRSSLSYAIALVFIFLVAFAVEWLSHTKLTASVADDVFA 60

Query: 61  GFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLNM 120
           GFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLNM
Sbjct: 61  GFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLNM 120

Query: 121 SDIPPLNC 129
           SDIPPLNC
Sbjct: 121 SDIPPLNC 128

[Close]

BLAST of Carg12399 vs. ExPASy TrEMBL
Match: A0A6J1GAH5 (Copper transporter OS=Cucurbita moschata OX=3662 GN=LOC111452258 PE=3 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 6.0e-62
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MEFHMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFA 60
           MEFHMTFFWGKSAEILFAGWPGR+SLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFA
Sbjct: 1   MEFHMTFFWGKSAEILFAGWPGRNSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFA 60

Query: 61  GFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLNM 120
           GFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLNM
Sbjct: 61  GFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLNM 120

Query: 121 SDIPPLNC 129
           SDIPPLNC
Sbjct: 121 SDIPPLNC 128

[Close]

BLAST of Carg12399 vs. ExPASy TrEMBL
Match: A0A5A7SL08 (Copper transporter OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00120 PE=3 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 2.1e-46
Identity = 97/130 (74.62%), Postives = 112/130 (86.15%), Query Frame = 0


Query: 1   MEFHMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFA 60
           ME HMTF+WGK+ EILF GWPGRS  SY +AL+FVFL+AF VEWLSHTK T  V  ++ A
Sbjct: 3   METHMTFYWGKTVEILFVGWPGRSFFSYTVALIFVFLLAFTVEWLSHTKFTTLVVGNLTA 62

Query: 61  GFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKID--LNL 120
           G VQT LYGVRVGLAF+VMLAVMS+NVGVLLAAV GYS+GFLVYGSRVF+RSK+D  LNL
Sbjct: 63  GLVQTILYGVRVGLAFIVMLAVMSYNVGVLLAAVTGYSMGFLVYGSRVFSRSKVDQNLNL 122

Query: 121 NMSDIPPLNC 129
           ++SD+PPLNC
Sbjct: 123 DLSDLPPLNC 132

[Close]

BLAST of Carg12399 vs. ExPASy TrEMBL
Match: A0A5D3BC00 (Copper transporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G001700 PE=3 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 6.0e-46
Identity = 96/130 (73.85%), Postives = 112/130 (86.15%), Query Frame = 0


Query: 1   MEFHMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFA 60
           ME HMTF+WGK+ EILF GWPGRS  SY +AL+FVFL+AF VEWLSHTK T  V  ++ A
Sbjct: 3   METHMTFYWGKTVEILFVGWPGRSFFSYTVALIFVFLLAFTVEWLSHTKFTTLVVGNLTA 62

Query: 61  GFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKID--LNL 120
           G VQT LYGVRVGLAF+VMLAVMS+NVGVLLAAV GYS+GFLVYGS+VF+RSK+D  LNL
Sbjct: 63  GLVQTILYGVRVGLAFIVMLAVMSYNVGVLLAAVTGYSMGFLVYGSQVFSRSKVDQNLNL 122

Query: 121 NMSDIPPLNC 129
           ++SD+PPLNC
Sbjct: 123 DLSDLPPLNC 132

[Close]

BLAST of Carg12399 vs. ExPASy TrEMBL
Match: A0A0A0LXH5 (Copper transporter OS=Cucumis sativus OX=3659 GN=Csa_1G526835 PE=3 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 3.0e-45
Identity = 94/130 (72.31%), Postives = 109/130 (83.85%), Query Frame = 0


Query: 1   MEFHMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFA 60
           ME HMTF+WGK+ EILF GWPGRS  S  I L+FVFL+AF VEWLSHTK T S  D++ A
Sbjct: 1   METHMTFYWGKTIEILFPGWPGRSFFSSVIVLIFVFLLAFTVEWLSHTKFTTSAMDNLTA 60

Query: 61  GFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLNM 120
           G VQT LYG+RVGLAF+VMLAVMS+NVG+LLAAV GYS+GFLVYGS++FNRSKID NLN+
Sbjct: 61  GLVQTILYGIRVGLAFIVMLAVMSYNVGILLAAVTGYSIGFLVYGSKIFNRSKIDPNLNL 120

Query: 121 S--DIPPLNC 129
              D+PPLNC
Sbjct: 121 DSLDLPPLNC 130

[Close]

BLAST of Carg12399 vs. TAIR 10
Match: AT5G59030.1 (copper transporter 1 )

HSP 1 Score: 132.9 bits (333), Expect = 1.9e-31
Identity = 67/131 (51.15%), Postives = 90/131 (68.70%), Query Frame = 0


Query: 1   MEFHMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDV-- 60
           M  HMTFFWGK+ E+LF+GWPG SS  YA+ L+FVF +A   EWL+H+ L      D   
Sbjct: 40  MMMHMTFFWGKNTEVLFSGWPGTSSGMYALCLIFVFFLAVLTEWLAHSSLLRGSTGDSAN 99

Query: 61  -FAGFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLN 120
             AG +QTA+Y +R+GLA++VMLAVMSFN GV L A+AG++VGF+++GS+ F  +  D  
Sbjct: 100 RAAGLIQTAVYTLRIGLAYLVMLAVMSFNAGVFLVALAGHAVGFMLFGSQTFRNTSDDRK 159

Query: 121 LNMSDIPPLNC 129
            N   +PP  C
Sbjct: 160 TNY--VPPSGC 168

[Close]

BLAST of Carg12399 vs. TAIR 10
Match: AT3G46900.1 (copper transporter 2 )

HSP 1 Score: 121.7 bits (304), Expect = 4.3e-28
Identity = 60/116 (51.72%), Postives = 82/116 (70.69%), Query Frame = 0


Query: 1   MEFHMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTK-LTASVADDVF 60
           M  HMTFFWGK+ E+LF+GWPG SS  YA+ L+ +FL+A   EWL+H+  L  S + +  
Sbjct: 28  MMMHMTFFWGKNTEVLFSGWPGTSSGMYALCLIVIFLLAVIAEWLAHSPILRVSGSTNRA 87

Query: 61  AGFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKID 116
           AG  QTA+Y ++ GL+++VMLAVMSFN GV + A+AGY VGF ++GS  F +   D
Sbjct: 88  AGLAQTAVYTLKTGLSYLVMLAVMSFNAGVFIVAIAGYGVGFFLFGSTTFKKPSDD 143

[Close]

BLAST of Carg12399 vs. TAIR 10
Match: AT2G26975.1 (Ctr copper transporter family )

HSP 1 Score: 116.3 bits (290), Expect = 1.8e-26
Identity = 59/113 (52.21%), Postives = 79/113 (69.91%), Query Frame = 0


Query: 4   HMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFA-GF 63
           HMTFFWGK+ EILF+GWPG S   Y + L+ VFL+A  VEWL+H+ +         A G 
Sbjct: 26  HMTFFWGKNTEILFSGWPGTSLGMYVLCLIVVFLLAVIVEWLAHSSILRGRGSTSRAKGL 85

Query: 64  VQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKID 116
           VQTA+Y ++ GLA++VMLAVMSFN GV + A+AG++VGF+++GS  F     D
Sbjct: 86  VQTAVYTLKTGLAYLVMLAVMSFNGGVFIVAIAGFAVGFMLFGSTAFKNPSDD 138

[Close]

BLAST of Carg12399 vs. TAIR 10
Match: AT5G59040.1 (copper transporter 3 )

HSP 1 Score: 102.4 bits (254), Expect = 2.7e-22
Identity = 52/106 (49.06%), Postives = 72/106 (67.92%), Query Frame = 0


Query: 4   HMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFAGFV 63
           HMTFFWGK+ E+LF GWPG S   Y + L  +F+++   E LS      S    +  G +
Sbjct: 31  HMTFFWGKTTEVLFDGWPGTSLKMYWVCLAVIFVISAFSECLSRCGFMKSGPASLGGGLL 90

Query: 64  QTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVF 110
           QTA+Y VR  L+++VMLAVMSFN GV +AA+AG+ +GF+++GSR F
Sbjct: 91  QTAVYTVRAALSYLVMLAVMSFNGGVFVAAMAGFGLGFMIFGSRAF 136

[Close]

BLAST of Carg12399 vs. TAIR 10
Match: AT2G37925.1 (copper transporter 4 )

HSP 1 Score: 97.1 bits (240), Expect = 1.1e-20
Identity = 50/114 (43.86%), Postives = 75/114 (65.79%), Query Frame = 0


Query: 4   HMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASV---ADDVFA 63
           H TF+WG + ++LF+GWPG     YA+AL+FVF +AF  EWL+     +S+   AD +  
Sbjct: 31  HPTFYWGYNCQVLFSGWPGSDRGMYALALIFVFFLAFLAEWLARCSDASSIKQGADKLAK 90

Query: 64  GFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKI 115
              +TA+Y V+ G +++V+LAV+SFN GV LAA+ G+++GF V+  R F    I
Sbjct: 91  VAFRTAMYTVKSGFSYLVILAVVSFNGGVFLAAIFGHALGFAVFRGRAFRNRDI 144

The following BLAST results are available for this feature:

BLAST of Carg12399 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023525766.1	5.5e-62	100.00	copper transporter 1-like [Cucurbita pepo subsp. pepo] >KAG7036956.1 Copper tran...	[more]
XP_022998910.1	7.2e-62	99.22	copper transporter 1-like [Cucurbita maxima]	[more]
XP_022948639.1	1.2e-61	99.22	copper transporter 1-like [Cucurbita moschata]	[more]
KAG6607279.1	2.0e-48	99.07	Copper transporter 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAA0031772.1	4.3e-46	74.62	putative Copper transporter [Cucumis melo var. makuwa]	[more]

BLAST of Carg12399 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39065	2.6e-30	51.15	Copper transporter 1 OS=Arabidopsis thaliana OX=3702 GN=COPT1 PE=2 SV=2	[more]
Q9STG2	6.0e-27	51.72	Copper transporter 2 OS=Arabidopsis thaliana OX=3702 GN=COPT2 PE=2 SV=1	[more]
Q8GWP3	2.5e-25	52.21	Copper transporter 6 OS=Arabidopsis thaliana OX=3702 GN=COPT6 PE=2 SV=1	[more]
Q9FGU8	3.8e-21	49.06	Copper transporter 3 OS=Arabidopsis thaliana OX=3702 GN=COPT3 PE=2 SV=1	[more]
Q8SAA5	1.6e-19	43.86	Copper transporter 4 OS=Arabidopsis thaliana OX=3702 GN=COPT4 PE=2 SV=2	[more]

BLAST of Carg12399 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KDT9	3.5e-62	99.22	Copper transporter OS=Cucurbita maxima OX=3661 GN=LOC111493433 PE=3 SV=1	[more]
A0A6J1GAH5	6.0e-62	99.22	Copper transporter OS=Cucurbita moschata OX=3662 GN=LOC111452258 PE=3 SV=1	[more]
A0A5A7SL08	2.1e-46	74.62	Copper transporter OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G0...	[more]
A0A5D3BC00	6.0e-46	73.85	Copper transporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G0...	[more]
A0A0A0LXH5	3.0e-45	72.31	Copper transporter OS=Cucumis sativus OX=3659 GN=Csa_1G526835 PE=3 SV=1	[more]

BLAST of Carg12399 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59030.1	1.9e-31	51.15	copper transporter 1	[more]
AT3G46900.1	4.3e-28	51.72	copper transporter 2	[more]
AT2G26975.1	1.8e-26	52.21	Ctr copper transporter family	[more]
AT5G59040.1	2.7e-22	49.06	copper transporter 3	[more]
AT2G37925.1	1.1e-20	43.86	copper transporter 4	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007274	Ctr copper transporter	PFAM	PF04145	Ctr	coord: 5..50 e-value: 2.3E-7 score: 31.5 coord: 59..103 e-value: 2.0E-8 score: 34.9
IPR007274	Ctr copper transporter	PANTHER	PTHR12483	SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS	coord: 1..127
None	No IPR available	PANTHER	PTHR12483:SF86	SUBFAMILY NOT NAMED	coord: 1..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12399-RA	Carg12399-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006878	cellular copper ion homeostasis
biological_process	GO:0035434	copper ion transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005375	copper ion transmembrane transporter activity