Carg12373 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg12373
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	methyl-CpG-binding domain-containing protein 5-like
Location	Carg_Chr01: 3247727 .. 3250083 (+)
RNA-Seq Expression	Carg12373
Synteny	Carg12373

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGCTTCTGGAACTTCGTTTCCGGACCCCGACTGGCCCCGTCAAGGTTCCACCCGACCCGACTTACCTTCTCCCCACCACTTCCCTCCCGACCCTCTCCTCTCCTCTGGCTCCTTCATCGACTCCTCCACCGCTCGATGCGGAACCCTACCTTCTTCTCCCGACTACGCCCGAGATCTTGACGGGAATCATCGCAACAAGCCTGACACCTCCGCCACTCTCCGATCTCCATTGCCTCCTGACCCTCTCAACCCTAAGAAGCTTCCTCCCGATTCTCCTACTCCAGGAAATGGAGATTCTTCGGCACCCAAGAAGGTGTCCGCCTCCAGAGGAACCGACGCCTCCCCCAAATCCGCCTTATCGGAAAGGCCTAATTGGCTCCCACCTGGCTGGGTGGTGGAAGATAGAGTTCGCGCTTCCGGTGCTACAGCTGGAACGGTTGATAAGGTGAATTGATTCCTTCTCTTATGCCTTCAATCCTTTACGAATGTTCCATTTCTTAGTTCATTCTCTTGTCTGGTGGTTCTGAGGAATATGTTTTGGTAATTAATCGACCATGCAAGTATTAGTCTATGCCTCTGGCTACTGACCTTTTTCTCTGCAATTTTATGTTTGACGATAGAACAGGGTCTTACTGTCTTTTATTATTATTATTTTTTCTTTCTACTCTACCTGTTTGACAATCGGTTTAGAATTTTCAACCAGTAATGGATGATTTTTTGTGGTACTGTTACGTTTACTCCTACTGCGTTGGAAACCTCGGATAAGAACATGAACCAATCAGAAGAAATGCTCATTGATTACCGAAAATGATCTTTTGTTTTTGCCTTAAAGGGTTGGTTGTACCATTCCTTCTCAGTTGTTCTCCTATCAATTCTGGAAAGAAAGAGTTATATCAAGTAGTAAGGATTTAGTAACATTCTGGATGGGTGATCATCTGAAAAATGGATCACTAGCTAAACTCTGTTATATTGATGGATACTGCAGTTTTAGTTACCTATTTGGTGATTAAAAAGTTCAATAGGAGCAAGTAAACTAAAGGGATTCATTTCATCCACATGGTCAGGGGTCTTCCGTAGATTTGTTGGAGTTTTTTTGTCCTCTATTTGGTATGGCATTTAATTATGTTCATGTCCTTGCTTTTGAATCAGCTTATTTGACAATCCAAGCAATTCTGTCTCGCAGTTACTTAGAACAAACTTTCTTGGTATTTTTCTCTGGATAGTGAACAAGACTCCACGAACTTTGATATAGATTAGGTGCTTCTTTGGATTTTAGTATTCTAGCTAACTTTGCACTTATATGAATTCAATTAGCATAGCAGAGTTTGGTTGTTAGGATGGAGACCATTGGAAAAAGCTTTACACAAACCTCCACTGCTGTGTTGATAACCAGTTCATAAATGGTCTGGGTCGAATTTGTAGAATAATGTTCATCATTTGATCTCTCCTTGCGTTTTGGTGAATAGCTTTGGACTCGATATTTGTAGATTTCAAATGCTCTTGCTGGAATCGTGCACCTCATACGATATGTGGCTGGTGCTTTGTGCTTGGCGTATGATGCTTCACTAATTGTCATGTTTGAGATGGGTTCTACCTTAGTTTTGTATTCATGAGTAGCTTTGTTTAAAACCATATTCACATTGCTGATAGACAAAACAAGTGCAAGCAATCAAGTACGGTCACAAGTACCATCTAGCATTTAATTATTGAGAAAGAGTTCGTATGGAAATTTGCTTATGAATTGAGTTCCTTTCTCTTTTTTCCTTTTGTTTTTGTCATGTCGTTCTGAATTAATTGTGAGCATGCTTGGGCCCCATTTATTACTTGAGGTTCCCCTTTCCTTTTATTCCGTTTTAAATGTTTATTGAACAAACAAACAGAAAAGAATGTTGAGAAAAATCTAATATCCCCATGTCCCTTGCAGTACTACTTTGACCCAAACTCAGGTCGTCGCTTCCGGTCTAAGATTGAAGTTCTTTACTTTCTCGAAACAGGAACGTTAAGGAAACGGAAGAAATCTTTAGACGGCAACGTGAGTCGAAAGCTAACACTCCTTCTTTTTAGCACCAAATAGATATTCAGATCTTCTCATCAATTTTTCACTTTTACTGATTTGCAACTCTGCAGTCTGCTGATGGCTCCGAAGAACCAAAGAGCAAGAAATCTTCAAGCAATGCTAAATCTGCTCCTTTAAACTTCGATTTCTTCAATGTGCCTGAAAAGGTCGAGTGGGTTCTCACAGACCCTTCTCAGGAGGCCTGGACGCCGTTTATTAACAACGAGAAAGTACCTGAATCGACTAAACGCGAATGGGTAGCAGCCTTTCAACTCCTCGGGCGATCGAAAGTCTGA

mRNA sequence

ATGTCTGCTTCTGGAACTTCGTTTCCGGACCCCGACTGGCCCCGTCAAGGTTCCACCCGACCCGACTTACCTTCTCCCCACCACTTCCCTCCCGACCCTCTCCTCTCCTCTGGCTCCTTCATCGACTCCTCCACCGCTCGATGCGGAACCCTACCTTCTTCTCCCGACTACGCCCGAGATCTTGACGGGAATCATCGCAACAAGCCTGACACCTCCGCCACTCTCCGATCTCCATTGCCTCCTGACCCTCTCAACCCTAAGAAGCTTCCTCCCGATTCTCCTACTCCAGGAAATGGAGATTCTTCGGCACCCAAGAAGGTGTCCGCCTCCAGAGGAACCGACGCCTCCCCCAAATCCGCCTTATCGGAAAGGCCTAATTGGCTCCCACCTGGCTGGGTGGTGGAAGATAGAGTTCGCGCTTCCGGTGCTACAGCTGGAACGGTTGATAAGTACTACTTTGACCCAAACTCAGGTCGTCGCTTCCGGTCTAAGATTGAAGTTCTTTACTTTCTCGAAACAGGAACGTTAAGGAAACGGAAGAAATCTTTAGACGGCAACTCTGCTGATGGCTCCGAAGAACCAAAGAGCAAGAAATCTTCAAGCAATGCTAAATCTGCTCCTTTAAACTTCGATTTCTTCAATGTGCCTGAAAAGGTCGAGTGGGTTCTCACAGACCCTTCTCAGGAGGCCTGGACGCCGTTTATTAACAACGAGAAAGTACCTGAATCGACTAAACGCGAATGGGTAGCAGCCTTTCAACTCCTCGGGCGATCGAAAGTCTGA

Coding sequence (CDS)

ATGTCTGCTTCTGGAACTTCGTTTCCGGACCCCGACTGGCCCCGTCAAGGTTCCACCCGACCCGACTTACCTTCTCCCCACCACTTCCCTCCCGACCCTCTCCTCTCCTCTGGCTCCTTCATCGACTCCTCCACCGCTCGATGCGGAACCCTACCTTCTTCTCCCGACTACGCCCGAGATCTTGACGGGAATCATCGCAACAAGCCTGACACCTCCGCCACTCTCCGATCTCCATTGCCTCCTGACCCTCTCAACCCTAAGAAGCTTCCTCCCGATTCTCCTACTCCAGGAAATGGAGATTCTTCGGCACCCAAGAAGGTGTCCGCCTCCAGAGGAACCGACGCCTCCCCCAAATCCGCCTTATCGGAAAGGCCTAATTGGCTCCCACCTGGCTGGGTGGTGGAAGATAGAGTTCGCGCTTCCGGTGCTACAGCTGGAACGGTTGATAAGTACTACTTTGACCCAAACTCAGGTCGTCGCTTCCGGTCTAAGATTGAAGTTCTTTACTTTCTCGAAACAGGAACGTTAAGGAAACGGAAGAAATCTTTAGACGGCAACTCTGCTGATGGCTCCGAAGAACCAAAGAGCAAGAAATCTTCAAGCAATGCTAAATCTGCTCCTTTAAACTTCGATTTCTTCAATGTGCCTGAAAAGGTCGAGTGGGTTCTCACAGACCCTTCTCAGGAGGCCTGGACGCCGTTTATTAACAACGAGAAAGTACCTGAATCGACTAAACGCGAATGGGTAGCAGCCTTTCAACTCCTCGGGCGATCGAAAGTCTGA

Protein sequence

MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARDLDGNHRNKPDTSATLRSPLPPDPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSALSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRKKSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKVPESTKREWVAAFQLLGRSKV

Homology

[Close]

BLAST of Carg12373 vs. NCBI nr
Match: KAG7036930.1 (Methyl-CpG-binding domain-containing protein 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 524.6 bits (1350), Expect = 4.8e-145
Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0


Query: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60
           MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD
Sbjct: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60

Query: 61  LDGNHRNKPDTSATLRSPLPPDPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSA 120
           LDGNHRNKPDTSATLRSPLPPDPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSA
Sbjct: 61  LDGNHRNKPDTSATLRSPLPPDPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSA 120

Query: 121 LSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK 180
           LSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK
Sbjct: 121 LSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK 180

Query: 181 KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV 240
           KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV
Sbjct: 181 KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV 240

Query: 241 PESTKREWVAAFQLLGRSKV 261
           PESTKREWVAAFQLLGRSKV
Sbjct: 241 PESTKREWVAAFQLLGRSKV 260

[Close]

BLAST of Carg12373 vs. NCBI nr
Match: XP_022948611.1 (methyl-CpG-binding domain-containing protein 5-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 518.8 bits (1335), Expect = 2.6e-143
Identity = 257/260 (98.85%), Postives = 258/260 (99.23%), Query Frame = 0


Query: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60
           MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD
Sbjct: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60

Query: 61  LDGNHRNKPDTSATLRSPLPPDPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSA 120
           LDGNHRNKPDTSATLRSPLP DPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSA
Sbjct: 61  LDGNHRNKPDTSATLRSPLPADPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSA 120

Query: 121 LSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK 180
           LSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDP SGRRFRSKIEVLYFLETGTLRKRK
Sbjct: 121 LSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPKSGRRFRSKIEVLYFLETGTLRKRK 180

Query: 181 KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV 240
           KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV
Sbjct: 181 KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV 240

Query: 241 PESTKREWVAAFQLLGRSKV 261
           PESTKREWVAAFQLLGRSK+
Sbjct: 241 PESTKREWVAAFQLLGRSKI 260

[Close]

BLAST of Carg12373 vs. NCBI nr
Match: KAG6607246.1 (Methyl-CpG-binding domain-containing protein 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 518.5 bits (1334), Expect = 3.4e-143
Identity = 258/260 (99.23%), Postives = 258/260 (99.23%), Query Frame = 0


Query: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60
           MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD
Sbjct: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60

Query: 61  LDGNHRNKPDTSATLRSPLPPDPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSA 120
           LDGNHRNKPDTSATLRSPLP DPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSA
Sbjct: 61  LDGNHRNKPDTSATLRSPLPADPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSA 120

Query: 121 LSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK 180
           LSERPNWLP GWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK
Sbjct: 121 LSERPNWLPTGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK 180

Query: 181 KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV 240
           KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV
Sbjct: 181 KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV 240

Query: 241 PESTKREWVAAFQLLGRSKV 261
           PESTKREWVAAFQLLGRSKV
Sbjct: 241 PESTKREWVAAFQLLGRSKV 260

[Close]

BLAST of Carg12373 vs. NCBI nr
Match: XP_023523162.1 (methyl-CpG-binding domain-containing protein 5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 515.4 bits (1326), Expect = 2.9e-142
Identity = 256/260 (98.46%), Postives = 256/260 (98.46%), Query Frame = 0


Query: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60
           MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD
Sbjct: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60

Query: 61  LDGNHRNKPDTSATLRSPLPPDPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSA 120
           LDG HR KPDTSATLRSPLP DPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSA
Sbjct: 61  LDGTHRKKPDTSATLRSPLPADPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSA 120

Query: 121 LSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK 180
           LSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK
Sbjct: 121 LSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK 180

Query: 181 KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV 240
           KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQE WTPFINNEKV
Sbjct: 181 KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEVWTPFINNEKV 240

Query: 241 PESTKREWVAAFQLLGRSKV 261
           PESTKREWVAAFQLLGRSKV
Sbjct: 241 PESTKREWVAAFQLLGRSKV 260

[Close]

BLAST of Carg12373 vs. NCBI nr
Match: XP_022998336.1 (methyl-CpG-binding domain-containing protein 5-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 515.0 bits (1325), Expect = 3.8e-142
Identity = 256/260 (98.46%), Postives = 257/260 (98.85%), Query Frame = 0


Query: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60
           MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD
Sbjct: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60

Query: 61  LDGNHRNKPDTSATLRSPLPPDPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSA 120
           LDGNHR KPDTSATLRSPLP DPLNPKKL PDSPTPGNGDSSAPKKVSASRGTDASPKSA
Sbjct: 61  LDGNHRKKPDTSATLRSPLPADPLNPKKLAPDSPTPGNGDSSAPKKVSASRGTDASPKSA 120

Query: 121 LSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK 180
           LS+RPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK
Sbjct: 121 LSDRPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK 180

Query: 181 KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV 240
           KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV
Sbjct: 181 KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV 240

Query: 241 PESTKREWVAAFQLLGRSKV 261
           PESTKREWVAAFQLLGRSKV
Sbjct: 241 PESTKREWVAAFQLLGRSKV 260

[Close]

BLAST of Carg12373 vs. ExPASy Swiss-Prot
Match: Q9LTJ1 (Methyl-CpG-binding domain-containing protein 6 OS=Arabidopsis thaliana OX=3702 GN=MBD6 PE=1 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.1e-30
Identity = 89/241 (36.93%), Postives = 118/241 (48.96%), Query Frame = 0


Query: 29  FPPDPLLSSGSFIDSSTARCGTLPSSPDYARDLDGNHRNKPDTSATLRSPLPPDPLNPKK 88
           FPPDPLL+SG+FI  S+A  GTL SS                                 K
Sbjct: 9   FPPDPLLASGAFI--SSAGDGTLDSS--------------------------------AK 68

Query: 89  LPPDSPTPGNGDSSAPKKVSASRGTD-----ASPKSALSERP--NWLPPGWVVEDRVRAS 148
             P     G   S    ++  + GTD        KS     P  NWLPPGW VED++R S
Sbjct: 69  RRPIQGGIGISGSGESVRIGMANGTDQVNHQTESKSRKRAAPGDNWLPPGWRVEDKIRTS 128

Query: 149 GATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRKKSLDGN-------SADGSEEP 208
           GATAG+VDKYY++PN+GR+FRS+ EVLY+LE GT ++  K  +            GS   
Sbjct: 129 GATAGSVDKYYYEPNTGRKFRSRTEVLYYLEHGTSKRGTKKAENTYFNPDHFEGQGSNRV 188

Query: 209 KSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKVPESTKREWVAAFQL 256
               +       PL+FDF N P+KV W + +  +E W P I + KV +S +R+W  AF  
Sbjct: 189 TRTATVPPPPPPPLDFDFKNPPDKVSWSMANAGEEGWIPNIGDVKVQDSVRRDWSTAFTF 215

[Close]

BLAST of Carg12373 vs. ExPASy Swiss-Prot
Match: Q9SNC0 (Methyl-CpG-binding domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=MBD5 PE=1 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.4e-29
Identity = 73/169 (43.20%), Postives = 93/169 (55.03%), Query Frame = 0


Query: 97  GNGDSSAPKKVSASRGTDASPKSALSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPN 156
           G   +  P +  A+     S K A     NWLPP W  E RVR SG  AGTVDK+Y++P 
Sbjct: 4   GTDQAQPPPENPATPVDSKSRKRATPGDDNWLPPDWRTEIRVRTSGTKAGTVDKFYYEPI 63

Query: 157 SGRRFRSKIEVLYFLETGTLRKRKKSLDGNSADGSE----------EPKSKKSSSNAKSA 216
           +GR+FRSK EVLY+LE GT +K+      N    SE          + KS K  +     
Sbjct: 64  TGRKFRSKNEVLYYLEHGTPKKKSVKTAENGDSHSEHSEGRGSARRQTKSNKKVTEPPPK 123

Query: 217 PLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKVPESTKREWVAAFQLL 256
           PLNFDF NVPEKV W   + S+EAW PFI + K+ ES  ++W   F L+
Sbjct: 124 PLNFDFLNVPEKVTWTGINGSEEAWLPFIGDYKIQESVSQDWDRVFTLV 172

[Close]

BLAST of Carg12373 vs. ExPASy TrEMBL
Match: A0A6J1G9P7 (methyl-CpG-binding domain-containing protein 5-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111452236 PE=4 SV=1)

HSP 1 Score: 518.8 bits (1335), Expect = 1.3e-143
Identity = 257/260 (98.85%), Postives = 258/260 (99.23%), Query Frame = 0


Query: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60
           MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD
Sbjct: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60

Query: 61  LDGNHRNKPDTSATLRSPLPPDPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSA 120
           LDGNHRNKPDTSATLRSPLP DPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSA
Sbjct: 61  LDGNHRNKPDTSATLRSPLPADPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSA 120

Query: 121 LSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK 180
           LSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDP SGRRFRSKIEVLYFLETGTLRKRK
Sbjct: 121 LSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPKSGRRFRSKIEVLYFLETGTLRKRK 180

Query: 181 KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV 240
           KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV
Sbjct: 181 KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV 240

Query: 241 PESTKREWVAAFQLLGRSKV 261
           PESTKREWVAAFQLLGRSK+
Sbjct: 241 PESTKREWVAAFQLLGRSKI 260

[Close]

BLAST of Carg12373 vs. ExPASy TrEMBL
Match: A0A6J1K9Z4 (methyl-CpG-binding domain-containing protein 5-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111493004 PE=4 SV=1)

HSP 1 Score: 515.0 bits (1325), Expect = 1.8e-142
Identity = 256/260 (98.46%), Postives = 257/260 (98.85%), Query Frame = 0


Query: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60
           MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD
Sbjct: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60

Query: 61  LDGNHRNKPDTSATLRSPLPPDPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSA 120
           LDGNHR KPDTSATLRSPLP DPLNPKKL PDSPTPGNGDSSAPKKVSASRGTDASPKSA
Sbjct: 61  LDGNHRKKPDTSATLRSPLPADPLNPKKLAPDSPTPGNGDSSAPKKVSASRGTDASPKSA 120

Query: 121 LSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK 180
           LS+RPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK
Sbjct: 121 LSDRPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK 180

Query: 181 KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV 240
           KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV
Sbjct: 181 KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV 240

Query: 241 PESTKREWVAAFQLLGRSKV 261
           PESTKREWVAAFQLLGRSKV
Sbjct: 241 PESTKREWVAAFQLLGRSKV 260

[Close]

BLAST of Carg12373 vs. ExPASy TrEMBL
Match: A0A6J1GAC7 (methyl-CpG-binding domain-containing protein 5-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111452236 PE=4 SV=1)

HSP 1 Score: 513.8 bits (1322), Expect = 4.1e-142
Identity = 257/262 (98.09%), Postives = 258/262 (98.47%), Query Frame = 0


Query: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60
           MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD
Sbjct: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60

Query: 61  LDGNHRNKPDTSATLRSPLPPDPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSA 120
           LDGNHRNKPDTSATLRSPLP DPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSA
Sbjct: 61  LDGNHRNKPDTSATLRSPLPADPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSA 120

Query: 121 LSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK 180
           LSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDP SGRRFRSKIEVLYFLETGTLRKRK
Sbjct: 121 LSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPKSGRRFRSKIEVLYFLETGTLRKRK 180

Query: 181 KSLDGN--SADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNE 240
           KSLDGN  SADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNE
Sbjct: 181 KSLDGNVKSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNE 240

Query: 241 KVPESTKREWVAAFQLLGRSKV 261
           KVPESTKREWVAAFQLLGRSK+
Sbjct: 241 KVPESTKREWVAAFQLLGRSKI 262

[Close]

BLAST of Carg12373 vs. ExPASy TrEMBL
Match: A0A6J1KC76 (methyl-CpG-binding domain-containing protein 5-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111493004 PE=4 SV=1)

HSP 1 Score: 510.0 bits (1312), Expect = 5.9e-141
Identity = 256/262 (97.71%), Postives = 257/262 (98.09%), Query Frame = 0


Query: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60
           MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD
Sbjct: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60

Query: 61  LDGNHRNKPDTSATLRSPLPPDPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSA 120
           LDGNHR KPDTSATLRSPLP DPLNPKKL PDSPTPGNGDSSAPKKVSASRGTDASPKSA
Sbjct: 61  LDGNHRKKPDTSATLRSPLPADPLNPKKLAPDSPTPGNGDSSAPKKVSASRGTDASPKSA 120

Query: 121 LSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK 180
           LS+RPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK
Sbjct: 121 LSDRPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK 180

Query: 181 KSLDGN--SADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNE 240
           KSLDGN  SADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNE
Sbjct: 181 KSLDGNAMSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNE 240

Query: 241 KVPESTKREWVAAFQLLGRSKV 261
           KVPESTKREWVAAFQLLGRSKV
Sbjct: 241 KVPESTKREWVAAFQLLGRSKV 262

[Close]

BLAST of Carg12373 vs. ExPASy TrEMBL
Match: A0A6J1HLU8 (methyl-CpG-binding domain-containing protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111464796 PE=4 SV=1)

HSP 1 Score: 402.5 bits (1033), Expect = 1.3e-108
Identity = 207/262 (79.01%), Postives = 224/262 (85.50%), Query Frame = 0


Query: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60
           MSA GTS  DPDWPR+  TR +LP  +H PPDPLL +GSFIDSS ARCGTLPSSP+++RD
Sbjct: 1   MSAFGTSLSDPDWPRRDPTRFNLPFSNHLPPDPLLDAGSFIDSSAARCGTLPSSPNHSRD 60

Query: 61  LDGNHRNKPDTSATLRSPLPPDPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSA 120
           LD NHR K +TS+TLRSP   DPLN           GNGDS A KK+S SRGTDASPKSA
Sbjct: 61  LDLNHRKKAETSSTLRSPFRADPLN----------AGNGDSPATKKLSGSRGTDASPKSA 120

Query: 121 LSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK 180
            SE+PNWLPPGW++EDRVR SGATAGTVDKYYFDP SGRRFRSKIEVLYFLETGTLRKRK
Sbjct: 121 SSEKPNWLPPGWIMEDRVRTSGATAGTVDKYYFDPVSGRRFRSKIEVLYFLETGTLRKRK 180

Query: 181 KSLDGN--SADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNE 240
           KSLDGN  SADG EEPK+KKSS+NAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNE
Sbjct: 181 KSLDGNGMSADGPEEPKNKKSSNNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNE 240

Query: 241 KVPESTKREWVAAFQLLGRSKV 261
           KVP+STKREWVAAF+LL RSKV
Sbjct: 241 KVPQSTKREWVAAFKLLSRSKV 252

[Close]

BLAST of Carg12373 vs. TAIR 10
Match: AT5G59380.1 (methyl-CPG-binding domain 6 )

HSP 1 Score: 135.2 bits (339), Expect = 7.6e-32
Identity = 89/241 (36.93%), Postives = 118/241 (48.96%), Query Frame = 0


Query: 29  FPPDPLLSSGSFIDSSTARCGTLPSSPDYARDLDGNHRNKPDTSATLRSPLPPDPLNPKK 88
           FPPDPLL+SG+FI  S+A  GTL SS                                 K
Sbjct: 9   FPPDPLLASGAFI--SSAGDGTLDSS--------------------------------AK 68

Query: 89  LPPDSPTPGNGDSSAPKKVSASRGTD-----ASPKSALSERP--NWLPPGWVVEDRVRAS 148
             P     G   S    ++  + GTD        KS     P  NWLPPGW VED++R S
Sbjct: 69  RRPIQGGIGISGSGESVRIGMANGTDQVNHQTESKSRKRAAPGDNWLPPGWRVEDKIRTS 128

Query: 149 GATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRKKSLDGN-------SADGSEEP 208
           GATAG+VDKYY++PN+GR+FRS+ EVLY+LE GT ++  K  +            GS   
Sbjct: 129 GATAGSVDKYYYEPNTGRKFRSRTEVLYYLEHGTSKRGTKKAENTYFNPDHFEGQGSNRV 188

Query: 209 KSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKVPESTKREWVAAFQL 256
               +       PL+FDF N P+KV W + +  +E W P I + KV +S +R+W  AF  
Sbjct: 189 TRTATVPPPPPPPLDFDFKNPPDKVSWSMANAGEEGWIPNIGDVKVQDSVRRDWSTAFTF 215

[Close]

BLAST of Carg12373 vs. TAIR 10
Match: AT3G46580.1 (methyl-CPG-binding domain protein 5 )

HSP 1 Score: 130.2 bits (326), Expect = 2.4e-30
Identity = 73/169 (43.20%), Postives = 93/169 (55.03%), Query Frame = 0


Query: 97  GNGDSSAPKKVSASRGTDASPKSALSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPN 156
           G   +  P +  A+     S K A     NWLPP W  E RVR SG  AGTVDK+Y++P 
Sbjct: 4   GTDQAQPPPENPATPVDSKSRKRATPGDDNWLPPDWRTEIRVRTSGTKAGTVDKFYYEPI 63

Query: 157 SGRRFRSKIEVLYFLETGTLRKRKKSLDGNSADGSE----------EPKSKKSSSNAKSA 216
           +GR+FRSK EVLY+LE GT +K+      N    SE          + KS K  +     
Sbjct: 64  TGRKFRSKNEVLYYLEHGTPKKKSVKTAENGDSHSEHSEGRGSARRQTKSNKKVTEPPPK 123

Query: 217 PLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKVPESTKREWVAAFQLL 256
           PLNFDF NVPEKV W   + S+EAW PFI + K+ ES  ++W   F L+
Sbjct: 124 PLNFDFLNVPEKVTWTGINGSEEAWLPFIGDYKIQESVSQDWDRVFTLV 172

The following BLAST results are available for this feature:

BLAST of Carg12373 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7036930.1	4.8e-145	100.00	Methyl-CpG-binding domain-containing protein 6, partial [Cucurbita argyrosperma ...	[more]
XP_022948611.1	2.6e-143	98.85	methyl-CpG-binding domain-containing protein 5-like isoform X2 [Cucurbita moscha...	[more]
KAG6607246.1	3.4e-143	99.23	Methyl-CpG-binding domain-containing protein 6, partial [Cucurbita argyrosperma ...	[more]
XP_023523162.1	2.9e-142	98.46	methyl-CpG-binding domain-containing protein 5-like [Cucurbita pepo subsp. pepo]	[more]
XP_022998336.1	3.8e-142	98.46	methyl-CpG-binding domain-containing protein 5-like isoform X2 [Cucurbita maxima...	[more]

BLAST of Carg12373 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LTJ1	1.1e-30	36.93	Methyl-CpG-binding domain-containing protein 6 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9SNC0	3.4e-29	43.20	Methyl-CpG-binding domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of Carg12373 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G9P7	1.3e-143	98.85	methyl-CpG-binding domain-containing protein 5-like isoform X2 OS=Cucurbita mosc...	[more]
A0A6J1K9Z4	1.8e-142	98.46	methyl-CpG-binding domain-containing protein 5-like isoform X2 OS=Cucurbita maxi...	[more]
A0A6J1GAC7	4.1e-142	98.09	methyl-CpG-binding domain-containing protein 5-like isoform X1 OS=Cucurbita mosc...	[more]
A0A6J1KC76	5.9e-141	97.71	methyl-CpG-binding domain-containing protein 5-like isoform X1 OS=Cucurbita maxi...	[more]
A0A6J1HLU8	1.3e-108	79.01	methyl-CpG-binding domain-containing protein 5-like OS=Cucurbita moschata OX=366...	[more]

BLAST of Carg12373 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59380.1	7.6e-32	36.93	methyl-CPG-binding domain 6	[more]
AT3G46580.1	2.4e-30	43.20	methyl-CPG-binding domain protein 5	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.890.10		coord: 95..209 e-value: 6.8E-22 score: 79.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 181..207
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 181..199
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..133
None	No IPR available	PANTHER	PTHR12396:SF46	METHYL-CPG BINDING DOMAIN PROTEIN-LIKE, ISOFORM C	coord: 110..248
None	No IPR available	PANTHER	PTHR12396	METHYL-CPG BINDING PROTEIN, MBD	coord: 110..248
IPR001739	Methyl-CpG DNA binding	PFAM	PF01429	MBD	coord: 121..218 e-value: 1.7E-14 score: 53.2
IPR001739	Methyl-CpG DNA binding	PROSITE	PS50982	MBD	coord: 118..190 score: 15.109206
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 112..175

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12373-RA	Carg12373-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding