Carg12352 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg12352
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Protein unc-80 like
Location	Carg_Chr01: 3094984 .. 3095373 (+)
RNA-Seq Expression	Carg12352
Synteny	Carg12352

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCCGTCTGCATATCAGAATGCGTCGACAACGTCTGCGTCGTCCCGGGCGGCCGCCCGACCCACGTGAACCTGCAGCGGTGTCCGGAGGAGGAGAACGACTCTGCAGAGAGAGAACGCCGCCGCCCACGGCCGAGAGGGGCTCGCCGACAAATGTATCTGAGGAGCTACACCTTTTCTAGAGAGGATGCCGTCGCCCCTAAGGGTACAACTCAGCACTGCCTTGGGAAGCTCAGGTCATTTCGGAAGCCGGAGGAGATCCGCGAAGGGCTGAGGAAGAGGAGGAGCCGCTGTTTCGCCGTTGCTAGGGCCGCCGCCAAGCAGGGTTCTTCCGGTGGTGCGTTGCTATCCATGTTTCGACGGCTGGTTTGTTGTGGCGGCCGGTAA

mRNA sequence

ATGGCCTCCGTCTGCATATCAGAATGCGTCGACAACGTCTGCGTCGTCCCGGGCGGCCGCCCGACCCACGTGAACCTGCAGCGGTGTCCGGAGGAGGAGAACGACTCTGCAGAGAGAGAACGCCGCCGCCCACGGCCGAGAGGGGCTCGCCGACAAATGTATCTGAGGAGCTACACCTTTTCTAGAGAGGATGCCGTCGCCCCTAAGGGTACAACTCAGCACTGCCTTGGGAAGCTCAGGTCATTTCGGAAGCCGGAGGAGATCCGCGAAGGGCTGAGGAAGAGGAGGAGCCGCTGTTTCGCCGTTGCTAGGGCCGCCGCCAAGCAGGGTTCTTCCGGTGGTGCGTTGCTATCCATGTTTCGACGGCTGGTTTGTTGTGGCGGCCGGTAA

Coding sequence (CDS)

ATGGCCTCCGTCTGCATATCAGAATGCGTCGACAACGTCTGCGTCGTCCCGGGCGGCCGCCCGACCCACGTGAACCTGCAGCGGTGTCCGGAGGAGGAGAACGACTCTGCAGAGAGAGAACGCCGCCGCCCACGGCCGAGAGGGGCTCGCCGACAAATGTATCTGAGGAGCTACACCTTTTCTAGAGAGGATGCCGTCGCCCCTAAGGGTACAACTCAGCACTGCCTTGGGAAGCTCAGGTCATTTCGGAAGCCGGAGGAGATCCGCGAAGGGCTGAGGAAGAGGAGGAGCCGCTGTTTCGCCGTTGCTAGGGCCGCCGCCAAGCAGGGTTCTTCCGGTGGTGCGTTGCTATCCATGTTTCGACGGCTGGTTTGTTGTGGCGGCCGGTAA

Protein sequence

MASVCISECVDNVCVVPGGRPTHVNLQRCPEEENDSAERERRRPRPRGARRQMYLRSYTFSREDAVAPKGTTQHCLGKLRSFRKPEEIREGLRKRRSRCFAVARAAAKQGSSGGALLSMFRRLVCCGGR

Homology

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BLAST of Carg12352 vs. NCBI nr
Match: KAG7036909.1 (hypothetical protein SDJN02_00529, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 259.2 bits (661), Expect = 1.9e-65
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MASVCISECVDNVCVVPGGRPTHVNLQRCPEEENDSAERERRRPRPRGARRQMYLRSYTF 60
           MASVCISECVDNVCVVPGGRPTHVNLQRCPEEENDSAERERRRPRPRGARRQMYLRSYTF
Sbjct: 1   MASVCISECVDNVCVVPGGRPTHVNLQRCPEEENDSAERERRRPRPRGARRQMYLRSYTF 60

Query: 61  SREDAVAPKGTTQHCLGKLRSFRKPEEIREGLRKRRSRCFAVARAAAKQGSSGGALLSMF 120
           SREDAVAPKGTTQHCLGKLRSFRKPEEIREGLRKRRSRCFAVARAAAKQGSSGGALLSMF
Sbjct: 61  SREDAVAPKGTTQHCLGKLRSFRKPEEIREGLRKRRSRCFAVARAAAKQGSSGGALLSMF 120

Query: 121 RRLVCCGGR 130
           RRLVCCGGR
Sbjct: 121 RRLVCCGGR 129

[Close]

BLAST of Carg12352 vs. NCBI nr
Match: XP_022949319.1 (uncharacterized protein LOC111452708 [Cucurbita moschata] >KAG6607224.1 hypothetical protein SDJN03_00566, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 257.7 bits (657), Expect = 5.4e-65
Identity = 128/129 (99.22%), Postives = 128/129 (99.22%), Query Frame = 0


Query: 1   MASVCISECVDNVCVVPGGRPTHVNLQRCPEEENDSAERERRRPRPRGARRQMYLRSYTF 60
           MASVCISECVDNVCVVPGGRPTHVNLQRCPEEENDSAERERRRPRPRGARRQMYLRSYTF
Sbjct: 1   MASVCISECVDNVCVVPGGRPTHVNLQRCPEEENDSAERERRRPRPRGARRQMYLRSYTF 60

Query: 61  SREDAVAPKGTTQHCLGKLRSFRKPEEIREGLRKRRSRCFAVARAAAKQGSSGGALLSMF 120
           SREDAVAPKGTTQHCLGKLRSFRKPEEIREGLRKRRSRCFAVAR AAKQGSSGGALLSMF
Sbjct: 61  SREDAVAPKGTTQHCLGKLRSFRKPEEIREGLRKRRSRCFAVARTAAKQGSSGGALLSMF 120

Query: 121 RRLVCCGGR 130
           RRLVCCGGR
Sbjct: 121 RRLVCCGGR 129

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BLAST of Carg12352 vs. NCBI nr
Match: XP_023524571.1 (uncharacterized protein LOC111788468 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 251.5 bits (641), Expect = 3.9e-63
Identity = 126/129 (97.67%), Postives = 127/129 (98.45%), Query Frame = 0


Query: 1   MASVCISECVDNVCVVPGGRPTHVNLQRCPEEENDSAERERRRPRPRGARRQMYLRSYTF 60
           MASVCISECVDNVCVVPGGRPTHVNLQR PEEENDSAERERRRPRPRGARRQMYLRSYTF
Sbjct: 1   MASVCISECVDNVCVVPGGRPTHVNLQRWPEEENDSAERERRRPRPRGARRQMYLRSYTF 60

Query: 61  SREDAVAPKGTTQHCLGKLRSFRKPEEIREGLRKRRSRCFAVARAAAKQGSSGGALLSMF 120
           SREDAVAPKGTTQHCLGKLRSFRKPE+IREGLRKRRSRCFAVARAAAKQ SSGGALLSMF
Sbjct: 61  SREDAVAPKGTTQHCLGKLRSFRKPEDIREGLRKRRSRCFAVARAAAKQASSGGALLSMF 120

Query: 121 RRLVCCGGR 130
           RRLVCCGGR
Sbjct: 121 RRLVCCGGR 129

[Close]

BLAST of Carg12352 vs. NCBI nr
Match: XP_022997982.1 (uncharacterized protein LOC111492773 [Cucurbita maxima])

HSP 1 Score: 242.3 bits (617), Expect = 2.3e-60
Identity = 122/127 (96.06%), Postives = 125/127 (98.43%), Query Frame = 0


Query: 1   MASVCISECVDNVCVVPGGRPTHVNLQRCPEEENDSAERERRRPRPRGARRQMYLRSYTF 60
           MASVCISECVDNVCVVPGGRPTHVNL+RCPEEENDSAE+ERRRPRPRGARRQMYLRSYTF
Sbjct: 1   MASVCISECVDNVCVVPGGRPTHVNLKRCPEEENDSAEKERRRPRPRGARRQMYLRSYTF 60

Query: 61  SREDAVAPKGTTQHCLGKLRSFRKPEEIREGLRKRRSRCFAVARAAAKQGSSGGALLSMF 120
           SREDAVAP GTTQHCLGKLRSFRKPEEIR+GLRKRRSRCFAVARAAAKQGSSGGALLSMF
Sbjct: 61  SREDAVAPVGTTQHCLGKLRSFRKPEEIRQGLRKRRSRCFAVARAAAKQGSSGGALLSMF 120

Query: 121 RR-LVCC 127
           RR LVCC
Sbjct: 121 RRLLVCC 127

[Close]

BLAST of Carg12352 vs. NCBI nr
Match: XP_011648508.1 (uncharacterized protein LOC105434501 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 7.9e-32
Identity = 87/131 (66.41%), Postives = 97/131 (74.05%), Query Frame = 0


Query: 1   MASVCISECVDNVCVVPGGRPTHVNLQRCPEEENDSAERERRRPRPRGA----RRQMYLR 60
           MASVCISECVDN C+V   RPT+VNLQR  EEE  S   ERRRPRPR A    RRQMYLR
Sbjct: 1   MASVCISECVDNACIVSAARPTYVNLQRWSEEEKWST--ERRRPRPRAADGISRRQMYLR 60

Query: 61  SYTFSREDAVAPKGTTQHCLGKL-RSFRKPEEIREGLRKRRSRCFAVARAAAKQGSSGGA 120
           SYTFSRED V P+ TTQ+C GK+ R  RKP  IR G  +RRSRC A+ +AAA Q SS GA
Sbjct: 61  SYTFSREDIVVPETTTQNCFGKIRRRRRKPATIRGG--RRRSRCLAMVKAAASQVSS-GA 120

Query: 121 LLSMFRRLVCC 127
           LL +FRRL+CC
Sbjct: 121 LLFLFRRLLCC 126

[Close]

BLAST of Carg12352 vs. ExPASy TrEMBL
Match: A0A6J1GCH4 (uncharacterized protein LOC111452708 OS=Cucurbita moschata OX=3662 GN=LOC111452708 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 2.6e-65
Identity = 128/129 (99.22%), Postives = 128/129 (99.22%), Query Frame = 0


Query: 1   MASVCISECVDNVCVVPGGRPTHVNLQRCPEEENDSAERERRRPRPRGARRQMYLRSYTF 60
           MASVCISECVDNVCVVPGGRPTHVNLQRCPEEENDSAERERRRPRPRGARRQMYLRSYTF
Sbjct: 1   MASVCISECVDNVCVVPGGRPTHVNLQRCPEEENDSAERERRRPRPRGARRQMYLRSYTF 60

Query: 61  SREDAVAPKGTTQHCLGKLRSFRKPEEIREGLRKRRSRCFAVARAAAKQGSSGGALLSMF 120
           SREDAVAPKGTTQHCLGKLRSFRKPEEIREGLRKRRSRCFAVAR AAKQGSSGGALLSMF
Sbjct: 61  SREDAVAPKGTTQHCLGKLRSFRKPEEIREGLRKRRSRCFAVARTAAKQGSSGGALLSMF 120

Query: 121 RRLVCCGGR 130
           RRLVCCGGR
Sbjct: 121 RRLVCCGGR 129

[Close]

BLAST of Carg12352 vs. ExPASy TrEMBL
Match: A0A6J1K6K9 (uncharacterized protein LOC111492773 OS=Cucurbita maxima OX=3661 GN=LOC111492773 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.1e-60
Identity = 122/127 (96.06%), Postives = 125/127 (98.43%), Query Frame = 0


Query: 1   MASVCISECVDNVCVVPGGRPTHVNLQRCPEEENDSAERERRRPRPRGARRQMYLRSYTF 60
           MASVCISECVDNVCVVPGGRPTHVNL+RCPEEENDSAE+ERRRPRPRGARRQMYLRSYTF
Sbjct: 1   MASVCISECVDNVCVVPGGRPTHVNLKRCPEEENDSAEKERRRPRPRGARRQMYLRSYTF 60

Query: 61  SREDAVAPKGTTQHCLGKLRSFRKPEEIREGLRKRRSRCFAVARAAAKQGSSGGALLSMF 120
           SREDAVAP GTTQHCLGKLRSFRKPEEIR+GLRKRRSRCFAVARAAAKQGSSGGALLSMF
Sbjct: 61  SREDAVAPVGTTQHCLGKLRSFRKPEEIRQGLRKRRSRCFAVARAAAKQGSSGGALLSMF 120

Query: 121 RR-LVCC 127
           RR LVCC
Sbjct: 121 RRLLVCC 127

[Close]

BLAST of Carg12352 vs. ExPASy TrEMBL
Match: A0A0A0LXY3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G497810 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 3.8e-32
Identity = 87/131 (66.41%), Postives = 97/131 (74.05%), Query Frame = 0


Query: 1   MASVCISECVDNVCVVPGGRPTHVNLQRCPEEENDSAERERRRPRPRGA----RRQMYLR 60
           MASVCISECVDN C+V   RPT+VNLQR  EEE  S   ERRRPRPR A    RRQMYLR
Sbjct: 1   MASVCISECVDNACIVSAARPTYVNLQRWSEEEKWST--ERRRPRPRAADGISRRQMYLR 60

Query: 61  SYTFSREDAVAPKGTTQHCLGKL-RSFRKPEEIREGLRKRRSRCFAVARAAAKQGSSGGA 120
           SYTFSRED V P+ TTQ+C GK+ R  RKP  IR G  +RRSRC A+ +AAA Q SS GA
Sbjct: 61  SYTFSREDIVVPETTTQNCFGKIRRRRRKPATIRGG--RRRSRCLAMVKAAASQVSS-GA 120

Query: 121 LLSMFRRLVCC 127
           LL +FRRL+CC
Sbjct: 121 LLFLFRRLLCC 126

[Close]

BLAST of Carg12352 vs. ExPASy TrEMBL
Match: A0A6J1I3Q2 (uncharacterized protein LOC111469389 OS=Cucurbita maxima OX=3661 GN=LOC111469389 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 5.0e-32
Identity = 83/130 (63.85%), Postives = 97/130 (74.62%), Query Frame = 0


Query: 1   MASVCISECVDNVCVVPGGRPTHVNLQRCPEEENDSAERERRRPRPRGA----RRQMYLR 60
           MASVCISEC+++ C++P GRPT+ +LQR PEEE+ S   E RRPR R A    RRQMYLR
Sbjct: 1   MASVCISECINDACIIPAGRPTYFSLQRWPEEEDGSV--EPRRPRLRAADGISRRQMYLR 60

Query: 61  SYTFSREDAVAPKGTTQHCLGKLRSFRKPEEIREGLRKRRSRCFAVARAAAKQGSSGGAL 120
           SYTFSRED    + T Q CLGKL+  R+P EIR G   RRSRCFA+ RAAA + SS GAL
Sbjct: 61  SYTFSREDTEVHESTAQTCLGKLKRRRRPAEIRGG--GRRSRCFAIVRAAAAKASS-GAL 120

Query: 121 LSMFRRLVCC 127
           LSMFRRL+CC
Sbjct: 121 LSMFRRLLCC 125

[Close]

BLAST of Carg12352 vs. ExPASy TrEMBL
Match: A0A5A7SXG3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00460 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 8.5e-32
Identity = 85/131 (64.89%), Postives = 97/131 (74.05%), Query Frame = 0


Query: 1   MASVCISECVDNVCVVPGGRPTHVNLQRCPEEENDSAERERRRPRPRGA----RRQMYLR 60
           MASVCISECVDN C+V   +PT+VNLQR  EEE  S   ERRRPRPR A    RRQMYLR
Sbjct: 1   MASVCISECVDNACIVSAAQPTYVNLQRWSEEEKWST--ERRRPRPRAAEGISRRQMYLR 60

Query: 61  SYTFSREDAVAPKGTTQHCLGKLRSFR-KPEEIREGLRKRRSRCFAVARAAAKQGSSGGA 120
           SYTFSRED V P+ TTQ+C GK+R  R +P  IR    +RRSRCFA+ +AAA Q SS GA
Sbjct: 61  SYTFSREDTVVPETTTQNCFGKIRRRRQRPARIRGS--RRRSRCFAMVKAAATQASS-GA 120

Query: 121 LLSMFRRLVCC 127
           L+ MFRRL+CC
Sbjct: 121 LVLMFRRLLCC 126

[Close]

BLAST of Carg12352 vs. TAIR 10
Match: AT5G02640.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46300.1); Has 37 Blast hits to 37 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 54.3 bits (129), Expect = 8.4e-08
Identity = 53/151 (35.10%), Postives = 70/151 (46.36%), Query Frame = 0


Query: 1   MASVCISECVDNV----CVVPGGRPTHVNLQRCPEEENDSAERERRRPRPRGAR------ 60
           M SVCIS C+++       V   R ++VNL + PE + +     RR      AR      
Sbjct: 1   MNSVCISSCINDAHDPRVPVRPVRASYVNLYKWPESDAEFVRSVRRGGGLPAARVVDSIS 60

Query: 61  -RQMYLRSYTFSRED-----AVAPKGTTQHCLGKLR----SFRKPEE-----IREGLRKR 120
            RQMYLRSYTFSRED          GT   CLG+++    S RK +E     I E  + R
Sbjct: 61  CRQMYLRSYTFSREDDESKSEKVSSGTQTSCLGRVKGTASSRRKSKEENGIIIVESTKPR 120

Query: 121 RSRCFAVARAAAKQGSSGGALLSMFRRLVCC 127
           R           KQ  +   +L +FRRL+ C
Sbjct: 121 RRGEKRRVSRKNKQEQACSVILRIFRRLLSC 151

The following BLAST results are available for this feature:

BLAST of Carg12352 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7036909.1	1.9e-65	100.00	hypothetical protein SDJN02_00529, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022949319.1	5.4e-65	99.22	uncharacterized protein LOC111452708 [Cucurbita moschata] >KAG6607224.1 hypothet...	[more]
XP_023524571.1	3.9e-63	97.67	uncharacterized protein LOC111788468 [Cucurbita pepo subsp. pepo]	[more]
XP_022997982.1	2.3e-60	96.06	uncharacterized protein LOC111492773 [Cucurbita maxima]	[more]
XP_011648508.1	7.9e-32	66.41	uncharacterized protein LOC105434501 [Cucumis sativus]	[more]

BLAST of Carg12352 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg12352 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GCH4	2.6e-65	99.22	uncharacterized protein LOC111452708 OS=Cucurbita moschata OX=3662 GN=LOC1114527...	[more]
A0A6J1K6K9	1.1e-60	96.06	uncharacterized protein LOC111492773 OS=Cucurbita maxima OX=3661 GN=LOC111492773...	[more]
A0A0A0LXY3	3.8e-32	66.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G497810 PE=4 SV=1	[more]
A0A6J1I3Q2	5.0e-32	63.85	uncharacterized protein LOC111469389 OS=Cucurbita maxima OX=3661 GN=LOC111469389...	[more]
A0A5A7SXG3	8.5e-32	64.89	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Carg12352 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02640.1	8.4e-08	35.10	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..51
None	No IPR available	PANTHER	PTHR35304:SF2	SUBFAMILY NOT NAMED	coord: 1..126
None	No IPR available	PANTHER	PTHR35304	OS05G0120300 PROTEIN-RELATED	coord: 1..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12352-RA	Carg12352-RA	mRNA