Carg12350 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg12350
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	CCT domain-containing protein
Location	Carg_Chr01: 3081297 .. 3081994 (+)
RNA-Seq Expression	Carg12350
Synteny	Carg12350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACAGTCACTCAGCCGCCACCGCAGATGCCTCCCTGAGCCACCTCCAACCGCCGCCACCTTTCCCGTCGTTCTCAAATTTGATACATTCCCACAACCCTTTCCCAATGGTAGAGGCATTGGAGGTTAGTTATAGTGGGAGTAGTAGTGGAGGTTGTAGTTATAGTAGCTACGGGTCTCCAACATCGCACCCTGGGCTAAGCCATGGTCCAACCTCTCGCCGACCACTCACAAGGGCTTACAGCTCCGGTCATAATGAGAGAGGAGGCGAAGAGAGGGCATGGTCCAGTGAAAGCAGTTTGATAATAGAAGGAATGAGAAGAGCTTCCCCATATACTCCCCAAGAGAAGAGACACAGAATTGAGAGATACAAAACCAAGAGAAACCAAAGGAATTTTAATAAGAAGATTAAGGTAATTAATTTTATTAATTTATTTTTTTTAATTTTATGTATATAAAATGTTAAAAGTTCGAATTTTTATAAGTCCGGAAAATTTGGCAGTATGAATGTAGGAAGACACTGGCAGATAGTAGAAAGCGCATACGAGGGAGATTTGCGAGAAATGAAGAAGCTGAGAATAGTAACTCGACTAGCTCGCCGGTCGAGACATGGAGCTGCTACGACAATGCCATGGCCGAGGACGATGCCTCTTGGACAACCTTTCTTGATTCTTACTCTCTTAACTTCGTTCCTTGA

mRNA sequence

ATGCACAGTCACTCAGCCGCCACCGCAGATGCCTCCCTGAGCCACCTCCAACCGCCGCCACCTTTCCCGTCGTTCTCAAATTTGATACATTCCCACAACCCTTTCCCAATGGTAGAGGCATTGGAGGTTAGTTATAGTGGGAGTAGTAGTGGAGGTTGTAGTTATAGTAGCTACGGGTCTCCAACATCGCACCCTGGGCTAAGCCATGGTCCAACCTCTCGCCGACCACTCACAAGGGCTTACAGCTCCGGTCATAATGAGAGAGGAGGCGAAGAGAGGGCATGGTCCAGTGAAAGCAGTTTGATAATAGAAGGAATGAGAAGAGCTTCCCCATATACTCCCCAAGAGAAGAGACACAGAATTGAGAGATACAAAACCAAGAGAAACCAAAGGAATTTTAATAAGAAGATTAAGTATGAATGTAGGAAGACACTGGCAGATAGTAGAAAGCGCATACGAGGGAGATTTGCGAGAAATGAAGAAGCTGAGAATAGTAACTCGACTAGCTCGCCGGTCGAGACATGGAGCTGCTACGACAATGCCATGGCCGAGGACGATGCCTCTTGGACAACCTTTCTTGATTCTTACTCTCTTAACTTCGTTCCTTGA

Coding sequence (CDS)

ATGCACAGTCACTCAGCCGCCACCGCAGATGCCTCCCTGAGCCACCTCCAACCGCCGCCACCTTTCCCGTCGTTCTCAAATTTGATACATTCCCACAACCCTTTCCCAATGGTAGAGGCATTGGAGGTTAGTTATAGTGGGAGTAGTAGTGGAGGTTGTAGTTATAGTAGCTACGGGTCTCCAACATCGCACCCTGGGCTAAGCCATGGTCCAACCTCTCGCCGACCACTCACAAGGGCTTACAGCTCCGGTCATAATGAGAGAGGAGGCGAAGAGAGGGCATGGTCCAGTGAAAGCAGTTTGATAATAGAAGGAATGAGAAGAGCTTCCCCATATACTCCCCAAGAGAAGAGACACAGAATTGAGAGATACAAAACCAAGAGAAACCAAAGGAATTTTAATAAGAAGATTAAGTATGAATGTAGGAAGACACTGGCAGATAGTAGAAAGCGCATACGAGGGAGATTTGCGAGAAATGAAGAAGCTGAGAATAGTAACTCGACTAGCTCGCCGGTCGAGACATGGAGCTGCTACGACAATGCCATGGCCGAGGACGATGCCTCTTGGACAACCTTTCTTGATTCTTACTCTCTTAACTTCGTTCCTTGA

Protein sequence

MHSHSAATADASLSHLQPPPPFPSFSNLIHSHNPFPMVEALEVSYSGSSSGGCSYSSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDDASWTTFLDSYSLNFVP

Homology

[Close]

BLAST of Carg12350 vs. NCBI nr
Match: KAG7036907.1 (Zinc finger protein CONSTANS-LIKE 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 399.1 bits (1024), Expect = 2.3e-107
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 1   MHSHSAATADASLSHLQPPPPFPSFSNLIHSHNPFPMVEALEVSYSGSSSGGCSYSSYGS 60
           MHSHSAATADASLSHLQPPPPFPSFSNLIHSHNPFPMVEALEVSYSGSSSGGCSYSSYGS
Sbjct: 1   MHSHSAATADASLSHLQPPPPFPSFSNLIHSHNPFPMVEALEVSYSGSSSGGCSYSSYGS 60

Query: 61  PTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHR 120
           PTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHR
Sbjct: 61  PTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHR 120

Query: 121 IERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDN 180
           IERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDN
Sbjct: 121 IERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDN 180

Query: 181 AMAEDDASWTTFLDSYSLNFVP 203
           AMAEDDASWTTFLDSYSLNFVP
Sbjct: 181 AMAEDDASWTTFLDSYSLNFVP 202

[Close]

BLAST of Carg12350 vs. NCBI nr
Match: KAG6607222.1 (Zinc finger protein CONSTANS-LIKE 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 396.7 bits (1018), Expect = 1.2e-106
Identity = 201/202 (99.50%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 1   MHSHSAATADASLSHLQPPPPFPSFSNLIHSHNPFPMVEALEVSYSGSSSGGCSYSSYGS 60
           MHSHSAATADASLSHLQPPPPFPSFSNLI+SHNPFPMVEALEVSYSGSSSGGCSYSSYGS
Sbjct: 1   MHSHSAATADASLSHLQPPPPFPSFSNLIYSHNPFPMVEALEVSYSGSSSGGCSYSSYGS 60

Query: 61  PTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHR 120
           PTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHR
Sbjct: 61  PTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHR 120

Query: 121 IERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDN 180
           IERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDN
Sbjct: 121 IERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDN 180

Query: 181 AMAEDDASWTTFLDSYSLNFVP 203
           AMAEDDASWTTFLDSYSLNFVP
Sbjct: 181 AMAEDDASWTTFLDSYSLNFVP 202

[Close]

BLAST of Carg12350 vs. NCBI nr
Match: XP_022949263.1 (zinc finger protein CONSTANS-LIKE 4-like [Cucurbita moschata])

HSP 1 Score: 381.7 bits (979), Expect = 3.9e-102
Identity = 196/202 (97.03%), Postives = 198/202 (98.02%), Query Frame = 0


Query: 1   MHSHSAATADASLSHLQPPPPFPSFSNLIHSHNPFPMVEALEVSYSGSSSGGCSYSSYGS 60
           MHSH+AATADASLSHLQPPPPFPSFSN I+SHNP PMVEALEVSYSGSSSGGC  SSYGS
Sbjct: 1   MHSHAAATADASLSHLQPPPPFPSFSNFIYSHNPSPMVEALEVSYSGSSSGGC--SSYGS 60

Query: 61  PTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHR 120
           PTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHR
Sbjct: 61  PTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHR 120

Query: 121 IERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDN 180
           IERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDN
Sbjct: 121 IERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDN 180

Query: 181 AMAEDDASWTTFLDSYSLNFVP 203
           AMAEDDASWTTFLDSYSLNFVP
Sbjct: 181 AMAEDDASWTTFLDSYSLNFVP 200

[Close]

BLAST of Carg12350 vs. NCBI nr
Match: XP_022998187.1 (zinc finger protein CONSTANS-LIKE 4-like [Cucurbita maxima])

HSP 1 Score: 380.9 bits (977), Expect = 6.6e-102
Identity = 195/202 (96.53%), Postives = 199/202 (98.51%), Query Frame = 0


Query: 1   MHSHSAATADASLSHLQPPPPFPSFSNLIHSHNPFPMVEALEVSYSGSSSGGCSYSSYGS 60
           MHSHSAATADASLSHLQPPPPFPSFSNLI+SHNPFP+VEALEVSYSGSSSGGC  SSYGS
Sbjct: 1   MHSHSAATADASLSHLQPPPPFPSFSNLIYSHNPFPIVEALEVSYSGSSSGGC--SSYGS 60

Query: 61  PTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHR 120
           PTSHPGLSHGP+SRRPLTRAYSSGHNER GEERAWSSESSLIIEGMRRASPYTPQEKRHR
Sbjct: 61  PTSHPGLSHGPSSRRPLTRAYSSGHNERRGEERAWSSESSLIIEGMRRASPYTPQEKRHR 120

Query: 121 IERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDN 180
           IERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSP+ETWSCYDN
Sbjct: 121 IERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPIETWSCYDN 180

Query: 181 AMAEDDASWTTFLDSYSLNFVP 203
           AMAEDDASWTTFLDSYSLNFVP
Sbjct: 181 AMAEDDASWTTFLDSYSLNFVP 200

[Close]

BLAST of Carg12350 vs. NCBI nr
Match: XP_023524572.1 (uncharacterized protein LOC111788469 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 313.5 bits (802), Expect = 1.3e-81
Identity = 160/166 (96.39%), Postives = 161/166 (96.99%), Query Frame = 0


Query: 37  MVEALEVSYSGSSSGGCSYSSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWS 96
           MVEALEVSYSGSSSGGCSYSSYGSPTSHPGLSH PTSRRPLTRAYSSGHNER GEER WS
Sbjct: 1   MVEALEVSYSGSSSGGCSYSSYGSPTSHPGLSHAPTSRRPLTRAYSSGHNERRGEERTWS 60

Query: 97  SESSLIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRF 156
           SESS+IIEGMRRASPYTPQEKRHRIERYK KRNQRNFNKKIKYECRKTLADSRKRIRGRF
Sbjct: 61  SESSMIIEGMRRASPYTPQEKRHRIERYKIKRNQRNFNKKIKYECRKTLADSRKRIRGRF 120

Query: 157 ARNEEAENSNSTSSPVETWSCYDNAMAEDDASWTTFLDSYSLNFVP 203
           ARNEEAENSNSTSSPVETWSCYDNAM EDDASWTTFLDSYSLNFVP
Sbjct: 121 ARNEEAENSNSTSSPVETWSCYDNAMPEDDASWTTFLDSYSLNFVP 166

[Close]

BLAST of Carg12350 vs. ExPASy Swiss-Prot
Match: Q940T9 (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=COL4 PE=2 SV=2)

HSP 1 Score: 50.4 bits (119), Expect = 2.7e-05
Identity = 28/62 (45.16%), Postives = 37/62 (59.68%), Query Frame = 0


Query: 105 GMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAEN 164
           G +RA P T  E+  R+ RY+ KR  R F K I+Y  RK  A+ R RI+GRFA+  +   
Sbjct: 283 GTQRAVPLTSAEREARVMRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDTNE 342

Query: 165 SN 167
           SN
Sbjct: 343 SN 344

[Close]

BLAST of Carg12350 vs. ExPASy TrEMBL
Match: A0A6J1GBJ0 (zinc finger protein CONSTANS-LIKE 4-like OS=Cucurbita moschata OX=3662 GN=LOC111452672 PE=4 SV=1)

HSP 1 Score: 381.7 bits (979), Expect = 1.9e-102
Identity = 196/202 (97.03%), Postives = 198/202 (98.02%), Query Frame = 0


Query: 1   MHSHSAATADASLSHLQPPPPFPSFSNLIHSHNPFPMVEALEVSYSGSSSGGCSYSSYGS 60
           MHSH+AATADASLSHLQPPPPFPSFSN I+SHNP PMVEALEVSYSGSSSGGC  SSYGS
Sbjct: 1   MHSHAAATADASLSHLQPPPPFPSFSNFIYSHNPSPMVEALEVSYSGSSSGGC--SSYGS 60

Query: 61  PTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHR 120
           PTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHR
Sbjct: 61  PTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHR 120

Query: 121 IERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDN 180
           IERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDN
Sbjct: 121 IERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDN 180

Query: 181 AMAEDDASWTTFLDSYSLNFVP 203
           AMAEDDASWTTFLDSYSLNFVP
Sbjct: 181 AMAEDDASWTTFLDSYSLNFVP 200

[Close]

BLAST of Carg12350 vs. ExPASy TrEMBL
Match: A0A6J1K781 (zinc finger protein CONSTANS-LIKE 4-like OS=Cucurbita maxima OX=3661 GN=LOC111492912 PE=4 SV=1)

HSP 1 Score: 380.9 bits (977), Expect = 3.2e-102
Identity = 195/202 (96.53%), Postives = 199/202 (98.51%), Query Frame = 0


Query: 1   MHSHSAATADASLSHLQPPPPFPSFSNLIHSHNPFPMVEALEVSYSGSSSGGCSYSSYGS 60
           MHSHSAATADASLSHLQPPPPFPSFSNLI+SHNPFP+VEALEVSYSGSSSGGC  SSYGS
Sbjct: 1   MHSHSAATADASLSHLQPPPPFPSFSNLIYSHNPFPIVEALEVSYSGSSSGGC--SSYGS 60

Query: 61  PTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHR 120
           PTSHPGLSHGP+SRRPLTRAYSSGHNER GEERAWSSESSLIIEGMRRASPYTPQEKRHR
Sbjct: 61  PTSHPGLSHGPSSRRPLTRAYSSGHNERRGEERAWSSESSLIIEGMRRASPYTPQEKRHR 120

Query: 121 IERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDN 180
           IERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSP+ETWSCYDN
Sbjct: 121 IERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPIETWSCYDN 180

Query: 181 AMAEDDASWTTFLDSYSLNFVP 203
           AMAEDDASWTTFLDSYSLNFVP
Sbjct: 181 AMAEDDASWTTFLDSYSLNFVP 200

[Close]

BLAST of Carg12350 vs. ExPASy TrEMBL
Match: A0A6J1I3X3 (zinc finger protein CONSTANS-LIKE 5-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469436 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.7e-47
Identity = 135/234 (57.69%), Postives = 155/234 (66.24%), Query Frame = 0


Query: 1   MHSHSAATADASLSHLQ------PPPPFPSFSNLIHSHNPF------PMVE-----ALEV 60
           MH+ S+AT +ASL HL        PP   SF + I SH+        PM+E       E+
Sbjct: 1   MHAFSSATLEASLCHLPTPDLAVSPPLLASFPHFISSHSSLLASELAPMLEPSGLLPSEL 60

Query: 61  SYSGSSSGGCSYSSYGSPTSHP--GLSHGP--------TSRRPLTRAYSSGHNERGGEER 120
           SYS  SSG C  SSY SPTS P   +SHGP             + RAY S ++ +G  E 
Sbjct: 61  SYS-CSSGPC--SSYESPTSKPQRSMSHGPGVQISMLFDLESSVRRAYRS-NDLQGRTEM 120

Query: 121 AWSSESSLIIEGM-RRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRI 180
             S+ESSLIIEGM  +A  Y+P+EKR RIE+YKTKRNQRNFNKKIKYECRKTLADSR+RI
Sbjct: 121 TNSNESSLIIEGMSTKACRYSPEEKRQRIEKYKTKRNQRNFNKKIKYECRKTLADSRRRI 180

Query: 181 RGRFARNEEAENSNSTSSPVETWSCYDNAMAE----DDASWTTFLDSYSLNFVP 203
           RGRFARNEE ENSNSTSSP ETWSCYDNA  E    DD SW TFLDSYS+NF+P
Sbjct: 181 RGRFARNEEVENSNSTSSPTETWSCYDNATTEEDGQDDGSWITFLDSYSVNFIP 230

[Close]

BLAST of Carg12350 vs. ExPASy TrEMBL
Match: A0A6J1HLZ0 (zinc finger protein CONSTANS-LIKE 5-like OS=Cucurbita moschata OX=3662 GN=LOC111464822 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 1.2e-45
Identity = 134/234 (57.26%), Postives = 154/234 (65.81%), Query Frame = 0


Query: 1   MHSHSAATADASLSHL------QPPPPFPSFSNLIHSHNP----------FPMVEA---- 60
           MH+ S+AT +ASL HL        PP   SF + I SH+            PM+E+    
Sbjct: 1   MHAFSSATLEASLCHLPAPDLAMSPPLLASFPHFISSHSSSFSSLLASDLVPMLESPGLL 60

Query: 61  -LEVSYSGSSSGGCSYSSYGSPTSHP--GLSHGPTSR--------RPLTRAYSSGHNERG 120
             E+SYS  SSG C  SSYGSPTS P   + H P  +          + RAYS  ++ +G
Sbjct: 61  PSELSYS-CSSGPC--SSYGSPTSKPQRSMRHRPNVQISTLFDLESSVRRAYSF-NDLQG 120

Query: 121 GEERAWSSESSLIIEGM-RRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADS 180
             E A SSESSLIIEGM  +A  Y+P+EKR RIE+YKTKRNQRNFNKKIKYECRKTLADS
Sbjct: 121 RTEMASSSESSLIIEGMSTKACRYSPEEKRQRIEKYKTKRNQRNFNKKIKYECRKTLADS 180

Query: 181 RKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAE----DDASWTTFLDSYSL 199
           R+RIRGRFARNEE ENSNSTSSP ETWSCYDNA AE    DD SW TFLDSYS+
Sbjct: 181 RRRIRGRFARNEEVENSNSTSSPTETWSCYDNATAEEVGQDDGSWITFLDSYSV 230

[Close]

BLAST of Carg12350 vs. ExPASy TrEMBL
Match: A0A0A0LUR6 (CCT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G497300 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 4.0e-44
Identity = 135/249 (54.22%), Postives = 150/249 (60.24%), Query Frame = 0


Query: 1   MHSHSAATADASLSHLQ------PPPPFPSFSNLIHSHNPF-----------PMVEALE- 60
           MHS S A  D S+ HL        PP FPSF N   SH+             P++E+ E 
Sbjct: 1   MHSFSPA-VDTSIFHLHSPDLIVSPPLFPSFPNFSSSHSSSFLLAYSQLALNPVLESPEL 60

Query: 61  -----VSYSGSSSGGCSYSSYGSPT-SHPGL---------------SHGP---------T 120
                +SYSG SSG C  SSYGSPT S P L                HGP         T
Sbjct: 61  LPSEVISYSG-SSGPC--SSYGSPTSSQPSLIQRSMSSQSLQKDRVRHGPGARISSLIDT 120

Query: 121 SRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHRIERYKTKRNQRN 180
               + R YSSG + +G  ER  SSESSLIIEGM +A  Y+P+EKR RIERYKTKRNQRN
Sbjct: 121 DMPAVRRVYSSG-DLQGRTERGCSSESSLIIEGMTKACRYSPEEKRERIERYKTKRNQRN 180

Query: 181 FNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAE-----DDA 197
           FNKKIKYECRKTLADSR+RIRGRFARNEE EN NSTSSP+E WSCY+N M E     DD 
Sbjct: 181 FNKKIKYECRKTLADSRRRIRGRFARNEEIENGNSTSSPLEAWSCYENPMVEEDTVQDDG 240

[Close]

BLAST of Carg12350 vs. TAIR 10
Match: AT5G59990.1 (CCT motif family protein )

HSP 1 Score: 103.6 bits (257), Expect = 1.9e-22
Identity = 85/214 (39.72%), Postives = 108/214 (50.47%), Query Frame = 0


Query: 15  HLQPPPPFPSFSNLIHSHNPFPMVEALE------------------VSYSGSSSGGCSYS 74
           H  PPPP    + L+ S N     EA+                    S S   SGG S  
Sbjct: 36  HQFPPPP---LALLMMSQNSLYAAEAVSGFGYFDSGMNGGGGSSSCDSPSSMGSGGESLV 95

Query: 75  SYGSPTSHPGLSHGPTSRR--------PLTRAYSSG---HNERGGEERAWSSESSLIIEG 134
              S +SH G S   T+          P+ RA S+G    + R      W SES+ IIEG
Sbjct: 96  MQRSVSSHNGFSGNYTAAHDFVNDDDGPVRRALSAGDLPRSSRRESSTVW-SESNAIIEG 155

Query: 135 MRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENS 194
           M +A  Y+P+EK+ +IE+Y++KRN RNFNK+IKYECRKTLADSR RIRGRFARN+E    
Sbjct: 156 MSKAYKYSPEEKKEKIEKYRSKRNLRNFNKRIKYECRKTLADSRPRIRGRFARNDEISQQ 215

Query: 195 NSTSSPVETWSCYDNAMAEDDASWTTFLDSYSLN 200
                          A+  D  +W +FLDS+S N
Sbjct: 216 EQVD--------VMEAVVGDVDTWASFLDSFSAN 237

[Close]

BLAST of Carg12350 vs. TAIR 10
Match: AT5G41380.1 (CCT motif family protein )

HSP 1 Score: 72.4 bits (176), Expect = 4.7e-13
Identity = 57/161 (35.40%), Postives = 85/161 (52.80%), Query Frame = 0


Query: 36  PMVEALEVSYSGSSSGGCSYSSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAW 95
           PM+++  +SY+  SS   ++ S                   + R YS+G  +   E +  
Sbjct: 149 PMMDSSNLSYNNLSSPENAFFS-----------------SQMRRVYSTGDLQNNMEMQRS 208

Query: 96  SSESSLII--EGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIR 155
           S  S++    E   +   Y+ +E++ +I +Y+ KRNQRNF K IKY CRKTLADSR RIR
Sbjct: 209 SENSTMPFSEEQNFKVGRYSAEERKEKISKYRAKRNQRNFTKTIKYACRKTLADSRPRIR 268

Query: 156 GRFARNEE-AENSNSTSSPVETWSCYDNAMAEDDASWTTFL 194
           GRFARN+E  E  N      E W   D    +++AS ++F+
Sbjct: 269 GRFARNDEVVEIPNIEDDDSELWK-LDGLHEKEEASVSSFV 291

[Close]

BLAST of Carg12350 vs. TAIR 10
Match: AT2G33350.1 (CCT motif family protein )

HSP 1 Score: 69.7 bits (169), Expect = 3.0e-12
Identity = 38/81 (46.91%), Postives = 54/81 (66.67%), Query Frame = 0


Query: 106 MRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENS 165
           + +    +P++++ +I RY  KRN+RNFNKKIKY CRKTLADSR R+RGRFA+N+E    
Sbjct: 300 LNKVGKLSPEQRKEKIRRYMKKRNERNFNKKIKYACRKTLADSRPRVRGRFAKNDEFGEP 359

Query: 166 NSTSSPVETWSCYDNAMAEDD 187
           N      + +S + +   EDD
Sbjct: 360 NR-----QAFSSHHDDEDEDD 375

[Close]

BLAST of Carg12350 vs. TAIR 10
Match: AT2G33350.2 (CCT motif family protein )

HSP 1 Score: 69.7 bits (169), Expect = 3.0e-12
Identity = 38/81 (46.91%), Postives = 54/81 (66.67%), Query Frame = 0


Query: 106 MRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENS 165
           + +    +P++++ +I RY  KRN+RNFNKKIKY CRKTLADSR R+RGRFA+N+E    
Sbjct: 299 LNKVGKLSPEQRKEKIRRYMKKRNERNFNKKIKYACRKTLADSRPRVRGRFAKNDEFGEP 358

Query: 166 NSTSSPVETWSCYDNAMAEDD 187
           N      + +S + +   EDD
Sbjct: 359 NR-----QAFSSHHDDEDEDD 374

[Close]

BLAST of Carg12350 vs. TAIR 10
Match: AT3G12890.1 (activator of spomin::LUC2 )

HSP 1 Score: 69.3 bits (168), Expect = 4.0e-12
Identity = 38/72 (52.78%), Postives = 49/72 (68.06%), Query Frame = 0


Query: 90  GEERAWSSESSLIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSR 149
           GE+   +SE  +  E   +   Y+ +E++ RI RY  K+NQRNFNK IKY CRKTLAD R
Sbjct: 112 GEQSWGNSEGGIQAEPNTKVGRYSVEERKDRIMRYLKKKNQRNFNKTIKYVCRKTLADRR 171

Query: 150 KRIRGRFARNEE 162
            R+RGRFARN +
Sbjct: 172 VRVRGRFARNND 183

The following BLAST results are available for this feature:

BLAST of Carg12350 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7036907.1	2.3e-107	100.00	Zinc finger protein CONSTANS-LIKE 4, partial [Cucurbita argyrosperma subsp. argy...	[more]
KAG6607222.1	1.2e-106	99.50	Zinc finger protein CONSTANS-LIKE 4, partial [Cucurbita argyrosperma subsp. soro...	[more]
XP_022949263.1	3.9e-102	97.03	zinc finger protein CONSTANS-LIKE 4-like [Cucurbita moschata]	[more]
XP_022998187.1	6.6e-102	96.53	zinc finger protein CONSTANS-LIKE 4-like [Cucurbita maxima]	[more]
XP_023524572.1	1.3e-81	96.39	uncharacterized protein LOC111788469 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg12350 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q940T9	2.7e-05	45.16	Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=COL4 PE=2...	[more]

BLAST of Carg12350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GBJ0	1.9e-102	97.03	zinc finger protein CONSTANS-LIKE 4-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1K781	3.2e-102	96.53	zinc finger protein CONSTANS-LIKE 4-like OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A6J1I3X3	1.7e-47	57.69	zinc finger protein CONSTANS-LIKE 5-like isoform X1 OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1HLZ0	1.2e-45	57.26	zinc finger protein CONSTANS-LIKE 5-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A0A0LUR6	4.0e-44	54.22	CCT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G497300 PE=4 SV...	[more]

BLAST of Carg12350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59990.1	1.9e-22	39.72	CCT motif family protein	[more]
AT5G41380.1	4.7e-13	35.40	CCT motif family protein	[more]
AT2G33350.1	3.0e-12	46.91	CCT motif family protein	[more]
AT2G33350.2	3.0e-12	46.91	CCT motif family protein	[more]
AT3G12890.1	4.0e-12	52.78	activator of spomin::LUC2	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010402	CCT domain	PFAM	PF06203	CCT	coord: 118..159 e-value: 5.5E-17 score: 61.6
IPR010402	CCT domain	PROSITE	PS51017	CCT	coord: 117..159 score: 14.743135
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..98
None	No IPR available	PANTHER	PTHR31319:SF73	CCT MOTIF FAMILY PROTEIN	coord: 75..197
None	No IPR available	PANTHER	PTHR31319	ZINC FINGER PROTEIN CONSTANS-LIKE 4	coord: 75..197

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12350-RA	Carg12350-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009909	regulation of flower development
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding