Carg12337 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg12337
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	cold-inducible RNA-binding protein B-like
Location	Carg_Chr01: 3019611 .. 3020754 (-)
RNA-Seq Expression	Carg12337
Synteny	Carg12337

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATATGGATTAAAAAGATGCAAATGCTCCTGAATGTTTGGAAGGAATGGCCAACCGACTCGGCACGCAGCTGTTCATCAGCAGTATATCTCTCTCACCTCACTCGCGAATGTTTCTTCTCAGTCTTTAAATTGATAATTTTAATTTTTGGCCCAGGACTGTCATCATACACTACGATCGAACGCCTCGAGACTCTGTTTTCACCATTCGGTTCAGTCTCTGAAGGTACATATCTCTCTTCCCATATCCCCTTTCAGTTCGTATTTCCTTTCCCTTCAATGGAAAATTTACCATGTGCAGCTCGGCTAATCAGAGACCCCAAAACCCAGAGGCCCAAAGGGTTCGGTTTTGTCACATTTCAGTCACCGGATGAGGCGAAGAAGGCTCTTCAAGCCATGGATGGTCGGGTATGTTGTCTCCCTGTTTACGCACATAACCTGTTCGACGAAATGTCTGACTGAAATTTTGTATGCAACTTGCAATTGTCCCATCTGTAATATGTATCTATTGGGCTTTATTGATATGAGCTTTCAACTAAGACTCTGATTTTGGTGATTAATGGTTATGGATAGTGTTTTAAGGTGTCATCGTCAAGGAGGTTACCTAAGATATATTTGAAAAATGATGCAGATAGTTGATGGAAGGTTGATTTTTGTTGAATTTGCGAAGACTAGCGGACATGGGGTGGATGCTGCATCTAGATAAAGAACATCATTCACTATGAGACTTGAAGGTTGATTTTTCTTCCCATTCATTTGAAAATAAAACTACAAGATTAGGAGTGTAATAAATCTAATGTTCTGTTGGGTTAACTTAGCTTCTCAGCTTGAAAGCCAACTATTTCAGCAGAACTTTGGTTTCGATAGGACATGGGACATGGGCCTTTACTTTCTTTGAATGCTTGCTATTTGCTTACATGGTGCTTGCCCACAAATGGTTTCTCTTAACTTTTGACTTATGTTCTTGGAGTTGTTCAAGCAACAAATTCTATGCGTGAAAGATGTCAAGTCAACTCCATGGGAATTAATAGTTGTCTCGATACACATTTTGATTCATGCAAGGTGTGTCTCATGCTTTCTTCTTGCATAAGGGTTCAAAGGTTTTCAAGTGATGGATCTTCTAGCTCTAACTTTGGTGAATGTCCT

mRNA sequence

TATATGGATTAAAAAGATGCAAATGCTCCTGAATGTTTGGAAGGAATGGCCAACCGACTCGGCACGCAGCTGTTCATCAGCAGACTGTCATCATACACTACGATCGAACGCCTCGAGACTCTGTTTTCACCATTCGGTTCAGTCTCTGAAGCTCGGCTAATCAGAGACCCCAAAACCCAGAGGCCCAAAGGGTTCGGTTTTGTCACATTTCAGTCACCGGATGAGGCGAAGAAGGCTCTTCAAGCCATGGATGGTCGGATAGTTGATGGAAGGTTGATTTTTGTTGAATTTGCGAAGACTAGCGGACATGGGGTGGATGCTGCATCTAGATAAAGAACATCATTCACTATGAGACTTGAAGGTTGATTTTTCTTCCCATTCATTTGAAAATAAAACTACAAGATTAGGAGTGTAATAAATCTAATGTTCTGTTGGGTTAACTTAGCTTCTCAGCTTGAAAGCCAACTATTTCAGCAGAACTTTGGTTTCGATAGGACATGGGACATGGGCCTTTACTTTCTTTGAATGCTTGCTATTTGCTTACATGGTGCTTGCCCACAAATGGTTTCTCTTAACTTTTGACTTATGTTCTTGGAGTTGTTCAAGCAACAAATTCTATGCGTGAAAGATGTCAAGTCAACTCCATGGGAATTAATAGTTGTCTCGATACACATTTTGATTCATGCAAGGTGTGTCTCATGCTTTCTTCTTGCATAAGGGTTCAAAGGTTTTCAAGTGATGGATCTTCTAGCTCTAACTTTGGTGAATGTCCT

Coding sequence (CDS)

ATGGCCAACCGACTCGGCACGCAGCTGTTCATCAGCAGACTGTCATCATACACTACGATCGAACGCCTCGAGACTCTGTTTTCACCATTCGGTTCAGTCTCTGAAGCTCGGCTAATCAGAGACCCCAAAACCCAGAGGCCCAAAGGGTTCGGTTTTGTCACATTTCAGTCACCGGATGAGGCGAAGAAGGCTCTTCAAGCCATGGATGGTCGGATAGTTGATGGAAGGTTGATTTTTGTTGAATTTGCGAAGACTAGCGGACATGGGGTGGATGCTGCATCTAGATAA

Protein sequence

MANRLGTQLFISRLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPDEAKKALQAMDGRIVDGRLIFVEFAKTSGHGVDAASR

Homology

[Close]

BLAST of Carg12337 vs. NCBI nr
Match: KAG6607208.1 (Cold-inducible RNA-binding protein B, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036894.1 Cold-inducible RNA-binding protein B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 188.3 bits (477), Expect = 3.0e-44
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MANRLGTQLFISRLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPDE 60
          MANRLGTQLFISRLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPDE
Sbjct: 1  MANRLGTQLFISRLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPDE 60

Query: 61 AKKALQAMDGRIVDGRLIFVEFAKTSGHGVDAASR 96
          AKKALQAMDGRIVDGRLIFVEFAKTSGHGVDAASR
Sbjct: 61 AKKALQAMDGRIVDGRLIFVEFAKTSGHGVDAASR 95

[Close]

BLAST of Carg12337 vs. NCBI nr
Match: XP_022949004.1 (cold-inducible RNA-binding protein B-like [Cucurbita moschata] >XP_022997823.1 cold-inducible RNA-binding protein B-like [Cucurbita maxima])

HSP 1 Score: 186.4 bits (472), Expect = 1.1e-43
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1  MANRLGTQLFISRLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPDE 60
          MANRLGTQLFISRLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPDE
Sbjct: 1  MANRLGTQLFISRLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPDE 60

Query: 61 AKKALQAMDGRIVDGRLIFVEFAKTSGHGVDAASR 96
          AKKALQAMDGRIVDGRLIFVEFAKT GHGVDAASR
Sbjct: 61 AKKALQAMDGRIVDGRLIFVEFAKTRGHGVDAASR 95

[Close]

BLAST of Carg12337 vs. NCBI nr
Match: XP_023523197.1 (cold-inducible RNA-binding protein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 177.2 bits (448), Expect = 6.8e-41
Identity = 90/95 (94.74%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 1  MANRLGTQLFISRLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPDE 60
          MANRLGTQLFISRLSSYTTIERLE+LFSPFGSVSEARLIRDPKTQRPKGFGFVTFQS DE
Sbjct: 1  MANRLGTQLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSLDE 60

Query: 61 AKKALQAMDGRIVDGRLIFVEFAKTSGHGVDAASR 96
          AKKAL AM+GRIVDGRLIFVEFAKT GHGVDAASR
Sbjct: 61 AKKALHAMNGRIVDGRLIFVEFAKTRGHGVDAASR 95

[Close]

BLAST of Carg12337 vs. NCBI nr
Match: XP_038895198.1 (small RNA-binding protein 11, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 173.7 bits (439), Expect = 7.5e-40
Identity = 88/95 (92.63%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 1   MANRLGTQLFISRLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPDE 60
           MANR+G+QLFISRLSSYTTIERLE+LFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSP E
Sbjct: 12  MANRVGSQLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVE 71

Query: 61  AKKALQAMDGRIVDGRLIFVEFAKTSGHGVDAASR 96
           AKKALQAM+GRIVDGRLIFVEFAKT  HGVDAASR
Sbjct: 72  AKKALQAMNGRIVDGRLIFVEFAKTRRHGVDAASR 106

[Close]

BLAST of Carg12337 vs. NCBI nr
Match: XP_008457543.1 (PREDICTED: cold-inducible RNA-binding protein B [Cucumis melo])

HSP 1 Score: 165.6 bits (418), Expect = 2.1e-37
Identity = 82/94 (87.23%), Postives = 89/94 (94.68%), Query Frame = 0


Query: 1  MANRLGTQLFISRLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPDE 60
          MANRLG++LFISRLSSYTTIERL++LFSPFGS+S+ARLIRDP+TQRPKGFGFVTFQSP E
Sbjct: 1  MANRLGSELFISRLSSYTTIERLKSLFSPFGSISQARLIRDPETQRPKGFGFVTFQSPVE 60

Query: 61 AKKALQAMDGRIVDGRLIFVEFAKTSGHGVDAAS 95
          AKKALQAMDGRIVDGRLIFVEFAKT  HGVD  S
Sbjct: 61 AKKALQAMDGRIVDGRLIFVEFAKTRKHGVDPTS 94

[Close]

BLAST of Carg12337 vs. ExPASy Swiss-Prot
Match: Q9DED4 (Cold-inducible RNA-binding protein B OS=Xenopus laevis OX=8355 GN=cirbp-b PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 6.7e-15
Identity = 41/81 (50.62%), Postives = 60/81 (74.07%), Query Frame = 0


Query: 8  QLFISRLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPDEAKKALQA 67
          +LFI  L+  T  E LE +FS +G +SE  +++D +T+R +GFGFVTF++PD+AK A+ A
Sbjct: 6  KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65

Query: 68 MDGRIVDGRLIFVEFA-KTSG 88
          M+G+ VDGR I V+ A K+SG
Sbjct: 66 MNGKAVDGRQIRVDQAGKSSG 86

[Close]

BLAST of Carg12337 vs. ExPASy Swiss-Prot
Match: Q28IQ9 (Cold-inducible RNA-binding protein OS=Xenopus tropicalis OX=8364 GN=cirbp PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 5.7e-14
Identity = 37/81 (45.68%), Postives = 59/81 (72.84%), Query Frame = 0


Query: 8  QLFISRLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPDEAKKALQA 67
          +LF+  L+  TT E LE +FS +G V+E  +++D +++R +GFGFVTF++P++AK A+ A
Sbjct: 7  KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66

Query: 68 MDGRIVDGRLIFVEFAKTSGH 89
          M+G+ VDGR I V+ A  S +
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSN 87

[Close]

BLAST of Carg12337 vs. ExPASy Swiss-Prot
Match: P60826 (Cold-inducible RNA-binding protein OS=Cricetulus griseus OX=10029 GN=CIRBP PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.3e-13
Identity = 38/79 (48.10%), Postives = 56/79 (70.89%), Query Frame = 0


Query: 8  QLFISRLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPDEAKKALQA 67
          +LF+  LS  T  + LE +FS +G +SE  +++D +TQR +GFGFVTF++ D+AK A+ A
Sbjct: 7  KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query: 68 MDGRIVDGRLIFVEFAKTS 87
          M+G+ VDGR I V+ A  S
Sbjct: 67 MNGKSVDGRQIRVDQAGKS 85

[Close]

BLAST of Carg12337 vs. ExPASy Swiss-Prot
Match: Q14011 (Cold-inducible RNA-binding protein OS=Homo sapiens OX=9606 GN=CIRBP PE=1 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.3e-13
Identity = 38/79 (48.10%), Postives = 56/79 (70.89%), Query Frame = 0


Query: 8  QLFISRLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPDEAKKALQA 67
          +LF+  LS  T  + LE +FS +G +SE  +++D +TQR +GFGFVTF++ D+AK A+ A
Sbjct: 7  KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query: 68 MDGRIVDGRLIFVEFAKTS 87
          M+G+ VDGR I V+ A  S
Sbjct: 67 MNGKSVDGRQIRVDQAGKS 85

[Close]

BLAST of Carg12337 vs. ExPASy Swiss-Prot
Match: P60824 (Cold-inducible RNA-binding protein OS=Mus musculus OX=10090 GN=Cirbp PE=1 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.3e-13
Identity = 38/79 (48.10%), Postives = 56/79 (70.89%), Query Frame = 0


Query: 8  QLFISRLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPDEAKKALQA 67
          +LF+  LS  T  + LE +FS +G +SE  +++D +TQR +GFGFVTF++ D+AK A+ A
Sbjct: 7  KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query: 68 MDGRIVDGRLIFVEFAKTS 87
          M+G+ VDGR I V+ A  S
Sbjct: 67 MNGKSVDGRQIRVDQAGKS 85

[Close]

BLAST of Carg12337 vs. ExPASy TrEMBL
Match: A0A6J1KF23 (cold-inducible RNA-binding protein B-like OS=Cucurbita maxima OX=3661 GN=LOC111492665 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 5.4e-44
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1  MANRLGTQLFISRLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPDE 60
          MANRLGTQLFISRLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPDE
Sbjct: 1  MANRLGTQLFISRLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPDE 60

Query: 61 AKKALQAMDGRIVDGRLIFVEFAKTSGHGVDAASR 96
          AKKALQAMDGRIVDGRLIFVEFAKT GHGVDAASR
Sbjct: 61 AKKALQAMDGRIVDGRLIFVEFAKTRGHGVDAASR 95

[Close]

BLAST of Carg12337 vs. ExPASy TrEMBL
Match: A0A6J1GBJ9 (cold-inducible RNA-binding protein B-like OS=Cucurbita moschata OX=3662 GN=LOC111452474 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 5.4e-44
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1  MANRLGTQLFISRLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPDE 60
          MANRLGTQLFISRLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPDE
Sbjct: 1  MANRLGTQLFISRLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPDE 60

Query: 61 AKKALQAMDGRIVDGRLIFVEFAKTSGHGVDAASR 96
          AKKALQAMDGRIVDGRLIFVEFAKT GHGVDAASR
Sbjct: 61 AKKALQAMDGRIVDGRLIFVEFAKTRGHGVDAASR 95

[Close]

BLAST of Carg12337 vs. ExPASy TrEMBL
Match: A0A1S3C5W5 (cold-inducible RNA-binding protein B OS=Cucumis melo OX=3656 GN=LOC103497209 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 9.9e-38
Identity = 82/94 (87.23%), Postives = 89/94 (94.68%), Query Frame = 0


Query: 1  MANRLGTQLFISRLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPDE 60
          MANRLG++LFISRLSSYTTIERL++LFSPFGS+S+ARLIRDP+TQRPKGFGFVTFQSP E
Sbjct: 1  MANRLGSELFISRLSSYTTIERLKSLFSPFGSISQARLIRDPETQRPKGFGFVTFQSPVE 60

Query: 61 AKKALQAMDGRIVDGRLIFVEFAKTSGHGVDAAS 95
          AKKALQAMDGRIVDGRLIFVEFAKT  HGVD  S
Sbjct: 61 AKKALQAMDGRIVDGRLIFVEFAKTRKHGVDPTS 94

[Close]

BLAST of Carg12337 vs. ExPASy TrEMBL
Match: A0A0A0KQ26 (Cold-inducible RNA binding protein OS=Cucumis sativus OX=3659 GN=Csa_5G593310 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 4.6e-35
Identity = 77/89 (86.52%), Postives = 84/89 (94.38%), Query Frame = 0


Query: 1  MANRLGTQLFISRLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPDE 60
          MANRLG++LFISRLSSYTT+ERL+ LFSPFGS+SEARLIRDPKT+RPKGFGFVTFQSP E
Sbjct: 1  MANRLGSELFISRLSSYTTLERLKNLFSPFGSISEARLIRDPKTERPKGFGFVTFQSPAE 60

Query: 61 AKKALQAMDGRIVDGRLIFVEFAKTSGHG 90
          AKKAL+AMDGRIVDGRLIFVEFAKT   G
Sbjct: 61 AKKALKAMDGRIVDGRLIFVEFAKTGDMG 89

[Close]

BLAST of Carg12337 vs. ExPASy TrEMBL
Match: A0A6J1DM71 (small RNA-binding protein 11, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111022472 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 4.8e-32
Identity = 72/90 (80.00%), Postives = 83/90 (92.22%), Query Frame = 0


Query: 1  MANRLGTQLFISRLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPDE 60
          MAN +G+Q+FISRLSSYTTIERL++LFS FG+VSEARL+RDPKT RPKGFGFVTFQSP E
Sbjct: 1  MANGVGSQVFISRLSSYTTIERLKSLFSVFGAVSEARLVRDPKTHRPKGFGFVTFQSPVE 60

Query: 61 AKKALQAMDGRIVDGRLIFVEFAKTSGHGV 91
          A+KA++AM+GRIVDGRLIFVEFA T G GV
Sbjct: 61 AEKAIRAMNGRIVDGRLIFVEFANTRGRGV 90

[Close]

BLAST of Carg12337 vs. TAIR 10
Match: AT3G46020.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 124.4 bits (311), Expect = 4.9e-29
Identity = 58/86 (67.44%), Postives = 72/86 (83.72%), Query Frame = 0


Query: 1  MANRLGTQLFISRLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPDE 60
          MA R+  QLF+SRLS+YTT + L  LFSPFG + EARLIRD +TQRPKGFGF+TF S D+
Sbjct: 1  MAKRISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDD 60

Query: 61 AKKALQAMDGRIVDGRLIFVEFAKTS 87
          A+KAL+++DG+IVDGRLIFVE AK +
Sbjct: 61 ARKALKSLDGKIVDGRLIFVEVAKNA 86

[Close]

BLAST of Carg12337 vs. TAIR 10
Match: AT5G59860.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 91.7 bits (226), Expect = 3.5e-19
Identity = 46/73 (63.01%), Postives = 60/73 (82.19%), Query Frame = 0


Query: 12  SRLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPDEAKKALQAMDGR 71
           S LS+YTT + L  LF+PF     ARLI+D +TQRPKGFGF+TF+S D+A+KAL+A++G+
Sbjct: 76  SGLSAYTTDQSLRQLFAPF-----ARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGK 135

Query: 72  IVDGRLIFVEFAK 85
           IV+GRLIFVE AK
Sbjct: 136 IVNGRLIFVETAK 143

[Close]

BLAST of Carg12337 vs. TAIR 10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 75.9 bits (185), Expect = 2.0e-14
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = 0


Query: 5   LGTQLFISRLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPDEAKKA 64
           + ++LFI  LS  TT + L   FS  G V EA+++ D  + R KGFGFVTF S DEA+KA
Sbjct: 32  VASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKA 91

Query: 65  LQAMDGRIVDGRLIFVEFAK 85
           L   +G+ ++GR IFV++AK
Sbjct: 92  LMEFNGQQLNGRTIFVDYAK 111

[Close]

BLAST of Carg12337 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 75.5 bits (184), Expect = 2.6e-14
Identity = 35/79 (44.30%), Postives = 52/79 (65.82%), Query Frame = 0


Query: 7   TQLFISRLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPDEAKKALQ 66
           T+L++S LS  TT + L   F  FG++    ++ D    RPKGF F+ +++ +EA KA+Q
Sbjct: 77  TKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQ 136

Query: 67  AMDGRIVDGRLIFVEFAKT 86
            M G+ +DGR+IFVE AKT
Sbjct: 137 GMHGKFLDGRVIFVEEAKT 155

[Close]

BLAST of Carg12337 vs. TAIR 10
Match: AT5G54580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 71.6 bits (174), Expect = 3.8e-13
Identity = 33/78 (42.31%), Postives = 52/78 (66.67%), Query Frame = 0


Query: 7   TQLFISRLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPDEAKKALQ 66
           T LF+S LS  TT E L T F+ FG V++A+++ D  +   KGFGFV + + +++ K + 
Sbjct: 56  TNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIA 115

Query: 67  AMDGRIVDGRLIFVEFAK 85
            MDG+ +DG +IF E+A+
Sbjct: 116 GMDGKFLDGWVIFAEYAR 133

The following BLAST results are available for this feature:

BLAST of Carg12337 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6607208.1	3.0e-44	100.00	Cold-inducible RNA-binding protein B, partial [Cucurbita argyrosperma subsp. sor...	[more]
XP_022949004.1	1.1e-43	98.95	cold-inducible RNA-binding protein B-like [Cucurbita moschata] >XP_022997823.1 c...	[more]
XP_023523197.1	6.8e-41	94.74	cold-inducible RNA-binding protein-like [Cucurbita pepo subsp. pepo]	[more]
XP_038895198.1	7.5e-40	92.63	small RNA-binding protein 11, chloroplastic-like [Benincasa hispida]	[more]
XP_008457543.1	2.1e-37	87.23	PREDICTED: cold-inducible RNA-binding protein B [Cucumis melo]	[more]

BLAST of Carg12337 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9DED4	6.7e-15	50.62	Cold-inducible RNA-binding protein B OS=Xenopus laevis OX=8355 GN=cirbp-b PE=1 S...	[more]
Q28IQ9	5.7e-14	45.68	Cold-inducible RNA-binding protein OS=Xenopus tropicalis OX=8364 GN=cirbp PE=2 S...	[more]
P60826	1.3e-13	48.10	Cold-inducible RNA-binding protein OS=Cricetulus griseus OX=10029 GN=CIRBP PE=2 ...	[more]
Q14011	1.3e-13	48.10	Cold-inducible RNA-binding protein OS=Homo sapiens OX=9606 GN=CIRBP PE=1 SV=1	[more]
P60824	1.3e-13	48.10	Cold-inducible RNA-binding protein OS=Mus musculus OX=10090 GN=Cirbp PE=1 SV=1	[more]

BLAST of Carg12337 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KF23	5.4e-44	98.95	cold-inducible RNA-binding protein B-like OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1GBJ9	5.4e-44	98.95	cold-inducible RNA-binding protein B-like OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A1S3C5W5	9.9e-38	87.23	cold-inducible RNA-binding protein B OS=Cucumis melo OX=3656 GN=LOC103497209 PE=...	[more]
A0A0A0KQ26	4.6e-35	86.52	Cold-inducible RNA binding protein OS=Cucumis sativus OX=3659 GN=Csa_5G593310 PE...	[more]
A0A6J1DM71	4.8e-32	80.00	small RNA-binding protein 11, chloroplastic OS=Momordica charantia OX=3673 GN=LO...	[more]

BLAST of Carg12337 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46020.1	4.9e-29	67.44	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G59860.1	3.5e-19	63.01	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G06210.1	2.0e-14	48.75	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G73530.1	2.6e-14	44.30	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G54580.1	3.8e-13	42.31	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 8..81 e-value: 7.5E-26 score: 101.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 9..78 e-value: 6.8E-23 score: 80.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 7..85 score: 20.149988
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..89 e-value: 2.8E-29 score: 104.1
None	No IPR available	PANTHER	PTHR15241:SF314	BNAA02G06700D PROTEIN	coord: 4..85
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 4..85
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 7..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12337-RA	Carg12337-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048026	positive regulation of mRNA splicing, via spliceosome
cellular_component	GO:0005681	spliceosomal complex
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding