Carg12311 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg12311
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	General transcription factor IIH subunit
Location	Carg_Chr01: 2869954 .. 2872523 (-)
RNA-Seq Expression	Carg12311
Synteny	Carg12311

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCATCTCTTCTCTTCACACTCGAATCCCACCCATCAAATTCATTCCCACCTCAGTTCTTTATTATCGATTCCTCAGCGCACCTTCAATCCCCGAATTGGCCCTCATTTTTCCATTTCTTTTGACCTACCTACTGTTACTCTTTAACTCCCCTAATGCTGCTTGTTCTCCAAGTATAGATTGTTTTCGATATTGGGGGTTCATCAATTTGATCTCATTTCAAAACCCTCAAGAAATTCCTTAGGAAAAACCATGAACAATGGCGAAAATCGGCGATTAAATGGTGAGGCCGAAGAAGAAGACGATGATGACGATGCCAATGGCGGAATGGCGGCCTGGGAAAGGACTTATGCCGATGATAGGTCGTGGGAAGCCCTACAAGAGGACGAGTCTGGGCTTCTTCGGCCGATTGACAATAAGGCCATTTTCCATGCCCAATATCGCAGACGTCTTCGTTCACTTTCTTCTTTAGCAACCACTGCTCGAATTCAAAAGGGTCTTATTCGCTATCTCTATGTCGTCATTGATTTCTCCAGGGTTGGTTTCCCTTTTCATTCATGTCTCTATTACTTCCTGCTATTTGATTTAATTTGACCTATGCCTTCGCTTTTGATGATCTTATTGAGAAAGGGGATTTGTGATGTTCATCAAGTTAAATGCATAGAATCTCTGCTGAAATGTTTTTCATTGAAAATATGGAGTAGATCACAAAACAAACAAACTTTCAAGTAATCTTAATTTCCAGAAACCAAATACTAACAATCAAATGATTATCATCAAATGATTATCAAACATGGACTTCTCCCAAGAACTATAATGTGGTATAATCTCATTTTTCCCAACTTGTTTGTTCTCTGATTATGTTAGGAAGTATTTTGTGAATGAGTTTAGTTTAGAGCATGAATTTCTGTCCATAGAAACTGTAAAAGTGATGGAATGGTGGTTTTTCCTTTTCTATTTCTCTTATTTTGCGTATCTCTCGACGTGCAGGCAGCTGCGGAAATGGATTTTCGACCGAGTCGAATGGCTGTGGTTGCAAAACATGTGGAAGCTTTTGTCAGGGAATTCTTTGACCAAAATCCTCTCAGTCAGATTGGTTTGGTGACTATAAAGGATGGAGTTGCTCATAGCTTAACAGATCTTGGTGGAAGTCCTGAGTCCCATGTTAAAGCATTAATGGGGAAACTGGAATGCTCAGGTGAAGCATCCTTGCAGAATGGTCTGGATCTTGTTTGTGGCTATCTAAGTCAAATACCATCATATGGGCATAGAGAAGTTTTAATCTTATACTCTGCTCTCAATTCCTGTGATCCTGGAGATATAATGGAGACAGTTCAGAAATGCAAAACATCTAAAATAAGGTGTTCAGTAATTGGTCTTACTGCTGAACTTTTTATATGCAGACATCTCTGTCAGGAAACCGGTGGCTCGTACTCGGTCGCATTGGATGAGGTGAGTTTAATTGGATGTGTCGGTTTCCTAAAATGAAGAACTAACCATAAAATTACTGCAGCAAGACTCTGTTGATGTTTTTATATGGGAGTACTTCGCTAAATGTTTGTGAAAAACTTGCCTTTTTTGTAGTCCCATTTCAAAGAGTTGCTATTAGAGCACGCACCCCCACCCCCAGCAATAGCAGACTCTGCAATGCCTAATTTGATCAAGATGGGGTTTCCACAAAGAGCAGGGGAGAGTTCTATTGCAATTTGTTCGTGTCACAAGGAAGCTAAAGTTGGAGGGGGCTATACTTGCCCTCGATGCAAAGCTCGAGTTTGCGAGCTGCCAACTGAGTGTCGAATTTGTGGATTGACACTTATTTCTTCACCTCATTTGGCTAGGTCGTATCATCATCTCTTTCCGATTATACCATTTGATGAAGTTTCTGATAAACTATTTCATGATCCACGACATCAACTACCGAAAGTTTGCTTTGGCTGCCAAGAAAACTTCACAAACCCTGGTAAGAACTCAAATGAACAGTATGTTTGGAATTATGGTCTTCTAGTAATATAATATACGTGTCGGATTAGTGAACGTGATATCTTAAAATCAGGTGGAGTGGGAAGAACAGACCTTCTTTTGTCTTTCTTACTCGGGTTTCTTTAAGCTGGGTGCTATTTTCGAATGGCCCATAATGTTTGATTCCTAAAGCAAAGAATGTTGTGTTTAAGAGAAACTTCGACGTCTTCTGTTCACGGTTTGGTCGTTCTTCATTACTAATTTTGTGCTGCATCAGTACTATGCTGAAACAATCTCATGGGGATTTAAGTTGTCTCTGTATTGGGTGACTTAAGATTATTACATTGCTCATATGTGATCCTGTTTAAGGCAATAGAAGCAACTTTATGAAGAAATATGGATGATTTCTGCACTTTCATCGAACTTTTGACTCATTGAAATGTACATTCTGTTCATATTAGGTACAGGTAACAGCCCAGGCATCCGAGTTTCTTGCCCAAAGTGCAAACAACACTTCTGTCTTGATTGTGATATTTATATTCACGAGAGCTTGCACAATTGCCCTGGCTGTGAGAGTTTCAGACGTCCCAAATCAGCGACTTCCGATGATTGA

mRNA sequence

TCATCTCTTCTCTTCACACTCGAATCCCACCCATCAAATTCATTCCCACCTCAGTTCTTTATTATCGATTCCTCAGCGCACCTTCAATCCCCGAATTGGCCCTCATTTTTCCATTTCTTTTGACCTACCTACTGTTACTCTTTAACTCCCCTAATGCTGCTTGTTCTCCAAGTATAGATTGTTTTCGATATTGGGGGTTCATCAATTTGATCTCATTTCAAAACCCTCAAGAAATTCCTTAGGAAAAACCATGAACAATGGCGAAAATCGGCGATTAAATGGTGAGGCCGAAGAAGAAGACGATGATGACGATGCCAATGGCGGAATGGCGGCCTGGGAAAGGACTTATGCCGATGATAGGTCGTGGGAAGCCCTACAAGAGGACGAGTCTGGGCTTCTTCGGCCGATTGACAATAAGGCCATTTTCCATGCCCAATATCGCAGACGTCTTCGTTCACTTTCTTCTTTAGCAACCACTGCTCGAATTCAAAAGGGTCTTATTCGCTATCTCTATGTCGTCATTGATTTCTCCAGGGCAGCTGCGGAAATGGATTTTCGACCGAGTCGAATGGCTGTGGTTGCAAAACATGTGGAAGCTTTTGTCAGGGAATTCTTTGACCAAAATCCTCTCAGTCAGATTGGTTTGGTGACTATAAAGGATGGAGTTGCTCATAGCTTAACAGATCTTGGTGGAAGTCCTGAGTCCCATGTTAAAGCATTAATGGGGAAACTGGAATGCTCAGGTGAAGCATCCTTGCAGAATGGTCTGGATCTTGTTTGTGGCTATCTAAGTCAAATACCATCATATGGGCATAGAGAAGTTTTAATCTTATACTCTGCTCTCAATTCCTGTGATCCTGGAGATATAATGGAGACAGTTCAGAAATGCAAAACATCTAAAATAAGGTGTTCAGTAATTGGTCTTACTGCTGAACTTTTTATATGCAGACATCTCTGTCAGGAAACCGGTGGCTCGTACTCGGTCGCATTGGATGAGTCCCATTTCAAAGAGTTGCTATTAGAGCACGCACCCCCACCCCCAGCAATAGCAGACTCTGCAATGCCTAATTTGATCAAGATGGGGTTTCCACAAAGAGCAGGGGAGAGTTCTATTGCAATTTGTTCGTGTCACAAGGAAGCTAAAGTTGGAGGGGGCTATACTTGCCCTCGATGCAAAGCTCGAGTTTGCGAGCTGCCAACTGAGTGTCGAATTTGTGGATTGACACTTATTTCTTCACCTCATTTGGCTAGGTCGTATCATCATCTCTTTCCGATTATACCATTTGATGAAGTTTCTGATAAACTATTTCATGATCCACGACATCAACTACCGAAAGTTTGCTTTGGCTGCCAAGAAAACTTCACAAACCCTGGTACAGGTAACAGCCCAGGCATCCGAGTTTCTTGCCCAAAGTGCAAACAACACTTCTGTCTTGATTGTGATATTTATATTCACGAGAGCTTGCACAATTGCCCTGGCTGTGAGAGTTTCAGACGTCCCAAATCAGCGACTTCCGATGATTGA

Coding sequence (CDS)

ATGAACAATGGCGAAAATCGGCGATTAAATGGTGAGGCCGAAGAAGAAGACGATGATGACGATGCCAATGGCGGAATGGCGGCCTGGGAAAGGACTTATGCCGATGATAGGTCGTGGGAAGCCCTACAAGAGGACGAGTCTGGGCTTCTTCGGCCGATTGACAATAAGGCCATTTTCCATGCCCAATATCGCAGACGTCTTCGTTCACTTTCTTCTTTAGCAACCACTGCTCGAATTCAAAAGGGTCTTATTCGCTATCTCTATGTCGTCATTGATTTCTCCAGGGCAGCTGCGGAAATGGATTTTCGACCGAGTCGAATGGCTGTGGTTGCAAAACATGTGGAAGCTTTTGTCAGGGAATTCTTTGACCAAAATCCTCTCAGTCAGATTGGTTTGGTGACTATAAAGGATGGAGTTGCTCATAGCTTAACAGATCTTGGTGGAAGTCCTGAGTCCCATGTTAAAGCATTAATGGGGAAACTGGAATGCTCAGGTGAAGCATCCTTGCAGAATGGTCTGGATCTTGTTTGTGGCTATCTAAGTCAAATACCATCATATGGGCATAGAGAAGTTTTAATCTTATACTCTGCTCTCAATTCCTGTGATCCTGGAGATATAATGGAGACAGTTCAGAAATGCAAAACATCTAAAATAAGGTGTTCAGTAATTGGTCTTACTGCTGAACTTTTTATATGCAGACATCTCTGTCAGGAAACCGGTGGCTCGTACTCGGTCGCATTGGATGAGTCCCATTTCAAAGAGTTGCTATTAGAGCACGCACCCCCACCCCCAGCAATAGCAGACTCTGCAATGCCTAATTTGATCAAGATGGGGTTTCCACAAAGAGCAGGGGAGAGTTCTATTGCAATTTGTTCGTGTCACAAGGAAGCTAAAGTTGGAGGGGGCTATACTTGCCCTCGATGCAAAGCTCGAGTTTGCGAGCTGCCAACTGAGTGTCGAATTTGTGGATTGACACTTATTTCTTCACCTCATTTGGCTAGGTCGTATCATCATCTCTTTCCGATTATACCATTTGATGAAGTTTCTGATAAACTATTTCATGATCCACGACATCAACTACCGAAAGTTTGCTTTGGCTGCCAAGAAAACTTCACAAACCCTGGTACAGGTAACAGCCCAGGCATCCGAGTTTCTTGCCCAAAGTGCAAACAACACTTCTGTCTTGATTGTGATATTTATATTCACGAGAGCTTGCACAATTGCCCTGGCTGTGAGAGTTTCAGACGTCCCAAATCAGCGACTTCCGATGATTGA

Protein sequence

MNNGENRRLNGEAEEEDDDDDANGGMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFHAQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVREFFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYLSQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETGGSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVGGGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQLPKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSATSDD

Homology

[Close]

BLAST of Carg12311 vs. NCBI nr
Match: KAG7036868.1 (General transcription factor IIH subunit 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 879.8 bits (2272), Expect = 9.5e-252
Identity = 424/424 (100.00%), Postives = 424/424 (100.00%), Query Frame = 0


Query: 1   MNNGENRRLNGEAEEEDDDDDANGGMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFH 60
           MNNGENRRLNGEAEEEDDDDDANGGMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFH
Sbjct: 1   MNNGENRRLNGEAEEEDDDDDANGGMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFH 60

Query: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE 120
           AQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE
Sbjct: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE 120

Query: 121 FFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL 180
           FFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL
Sbjct: 121 FFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL 180

Query: 181 SQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETG 240
           SQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETG
Sbjct: 181 SQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETG 240

Query: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVG 300
           GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVG
Sbjct: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVG 300

Query: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQL 360
           GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQL
Sbjct: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQL 360

Query: 361 PKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA 420
           PKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA
Sbjct: 361 PKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA 420

Query: 421 TSDD 425
           TSDD
Sbjct: 421 TSDD 424

[Close]

BLAST of Carg12311 vs. NCBI nr
Match: XP_022949453.1 (general transcription factor IIH subunit 2 [Cucurbita moschata] >XP_023525764.1 general transcription factor IIH subunit 2 [Cucurbita pepo subsp. pepo] >KAG6607180.1 General transcription factor IIH subunit 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 878.6 bits (2269), Expect = 2.1e-251
Identity = 423/424 (99.76%), Postives = 424/424 (100.00%), Query Frame = 0


Query: 1   MNNGENRRLNGEAEEEDDDDDANGGMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFH 60
           MNNGENRRLNGEAEEEDDDDDANGGMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFH
Sbjct: 1   MNNGENRRLNGEAEEEDDDDDANGGMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFH 60

Query: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE 120
           AQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE
Sbjct: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE 120

Query: 121 FFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL 180
           FFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL
Sbjct: 121 FFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL 180

Query: 181 SQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETG 240
           +QIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETG
Sbjct: 181 NQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETG 240

Query: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVG 300
           GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVG
Sbjct: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVG 300

Query: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQL 360
           GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQL
Sbjct: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQL 360

Query: 361 PKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA 420
           PKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA
Sbjct: 361 PKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA 420

Query: 421 TSDD 425
           TSDD
Sbjct: 421 TSDD 424

[Close]

BLAST of Carg12311 vs. NCBI nr
Match: XP_022998882.1 (general transcription factor IIH subunit 2 [Cucurbita maxima])

HSP 1 Score: 876.3 bits (2263), Expect = 1.1e-250
Identity = 422/424 (99.53%), Postives = 423/424 (99.76%), Query Frame = 0


Query: 1   MNNGENRRLNGEAEEEDDDDDANGGMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFH 60
           MNNGENRRLNGEAEEEDDDDDANGGMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFH
Sbjct: 1   MNNGENRRLNGEAEEEDDDDDANGGMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFH 60

Query: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE 120
           AQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE
Sbjct: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE 120

Query: 121 FFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL 180
           FFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL
Sbjct: 121 FFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL 180

Query: 181 SQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETG 240
           +QIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETG
Sbjct: 181 NQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETG 240

Query: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVG 300
           GSY VALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVG
Sbjct: 241 GSYLVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVG 300

Query: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQL 360
           GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQL
Sbjct: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQL 360

Query: 361 PKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA 420
           PKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA
Sbjct: 361 PKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA 420

Query: 421 TSDD 425
           TSDD
Sbjct: 421 TSDD 424

[Close]

BLAST of Carg12311 vs. NCBI nr
Match: XP_038874496.1 (general transcription factor IIH subunit 2 isoform X1 [Benincasa hispida])

HSP 1 Score: 844.7 bits (2181), Expect = 3.4e-241
Identity = 403/424 (95.05%), Postives = 417/424 (98.35%), Query Frame = 0


Query: 1   MNNGENRRLNGEAEEEDDDDDANGGMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFH 60
           MNNGENRRLNGEA+EEDDDDDANGG+AAWERTYADDRSWEALQEDESGLLRPIDNKAI+H
Sbjct: 1   MNNGENRRLNGEADEEDDDDDANGGLAAWERTYADDRSWEALQEDESGLLRPIDNKAIYH 60

Query: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE 120
           AQYRRRLRSLSSLATTARIQKGLIRYLY+VIDFSRAA EMDFRPSRMAVVAKHVEAFVRE
Sbjct: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYIVIDFSRAATEMDFRPSRMAVVAKHVEAFVRE 120

Query: 121 FFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL 180
           FFDQNPLSQIGLVTIKDGVAH LTDLGGSPESHVKALMGKLECSG+ASLQNGL+LV G+L
Sbjct: 121 FFDQNPLSQIGLVTIKDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHGFL 180

Query: 181 SQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETG 240
           +QIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAE+FICRHLCQETG
Sbjct: 181 NQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETG 240

Query: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVG 300
           GSYS+ALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRA ESSIAICSCHKEAKVG
Sbjct: 241 GSYSIALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVG 300

Query: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQL 360
           GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDK+ HDPR+QL
Sbjct: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVLHDPRNQL 360

Query: 361 PKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA 420
           PKVCFGCQE+  NPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA
Sbjct: 361 PKVCFGCQESLMNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA 420

Query: 421 TSDD 425
           TSD+
Sbjct: 421 TSDE 424

[Close]

BLAST of Carg12311 vs. NCBI nr
Match: XP_022157930.1 (general transcription factor IIH subunit 2 [Momordica charantia])

HSP 1 Score: 836.3 bits (2159), Expect = 1.2e-238
Identity = 398/424 (93.87%), Postives = 413/424 (97.41%), Query Frame = 0


Query: 1   MNNGENRRLNGEAEEEDDDDDANGGMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFH 60
           MNNGE  RLNGEA+EEDDDDD NGG+AAWERTYADDRSWEALQEDESGLLRPIDNKAI+H
Sbjct: 1   MNNGEGSRLNGEADEEDDDDDGNGGLAAWERTYADDRSWEALQEDESGLLRPIDNKAIYH 60

Query: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE 120
           AQYRRRLRSLSS+ATTARIQKGLIRYLY+VIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE
Sbjct: 61  AQYRRRLRSLSSIATTARIQKGLIRYLYIVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE 120

Query: 121 FFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL 180
           FFDQNPLSQIGLVTIKDGVAH LTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL
Sbjct: 121 FFDQNPLSQIGLVTIKDGVAHCLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL 180

Query: 181 SQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETG 240
           +QIPSYGHREVLILYSALNSCDPGDIMET+QKCKTSKIRCSVIGLTAE+FICRHLCQETG
Sbjct: 181 NQIPSYGHREVLILYSALNSCDPGDIMETIQKCKTSKIRCSVIGLTAEIFICRHLCQETG 240

Query: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVG 300
           GSYS+ALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRA ESSIAICSCHKEAKVG
Sbjct: 241 GSYSIALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVG 300

Query: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQL 360
           GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDK+ +DPRH+L
Sbjct: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVLNDPRHRL 360

Query: 361 PKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA 420
           PKVCFGCQE+  N GTGNS GIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA
Sbjct: 361 PKVCFGCQESLMNSGTGNSQGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA 420

Query: 421 TSDD 425
            S++
Sbjct: 421 ASNE 424

[Close]

BLAST of Carg12311 vs. ExPASy Swiss-Prot
Match: Q9ZVN9 (General transcription factor IIH subunit 2 OS=Arabidopsis thaliana OX=3702 GN=GTF2H2 PE=1 SV=1)

HSP 1 Score: 656.4 bits (1692), Expect = 2.2e-187
Identity = 314/420 (74.76%), Postives = 358/420 (85.24%), Query Frame = 0


Query: 3   NGENRRLNGEAEEEDDDDDANGGMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFHAQ 62
           + + +R N E EEEDD+D    G+  WER Y DDRSWE LQEDESGLLRPIDN AI+HAQ
Sbjct: 2   SNQRKRSNDEREEEDDEDAE--GIGEWERAYVDDRSWEELQEDESGLLRPIDNSAIYHAQ 61

Query: 63  YRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVREFF 122
           YRRRLR LS+ A   RIQKGLIRYLY+VIDFSRAAAEMDFRPSRMA++AKHVEAF+REFF
Sbjct: 62  YRRRLRMLSAAAAGTRIQKGLIRYLYIVIDFSRAAAEMDFRPSRMAIMAKHVEAFIREFF 121

Query: 123 DQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYLSQ 182
           DQNPLSQIGLV+IK+GVAH+LTDLGGSPE+H+KALMGKLE  G++SLQN L+LV  +L+Q
Sbjct: 122 DQNPLSQIGLVSIKNGVAHTLTDLGGSPETHIKALMGKLEALGDSSLQNALELVHEHLNQ 181

Query: 183 IPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETGGS 242
           +PSYGHREVLILYSAL +CDPGDIMET+QKCK SK+RCSVIGL+AE+FIC+HLCQETGG 
Sbjct: 182 VPSYGHREVLILYSALCTCDPGDIMETIQKCKKSKLRCSVIGLSAEMFICKHLCQETGGL 241

Query: 243 YSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVGGG 302
           YSVA+DE H K+LLLEHAPPPPAIA+ A+ NLIKMGFPQRA E S+AICSCHKE K+G G
Sbjct: 242 YSVAVDEVHLKDLLLEHAPPPPAIAEFAIANLIKMGFPQRAAEGSMAICSCHKEVKIGAG 301

Query: 303 YTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEV-SDKLFHDPRHQLP 362
           Y CPRCKARVC+LPTEC ICGLTL+SSPHLARSYHHLFPI PFDEV +    +D R +L 
Sbjct: 302 YMCPRCKARVCDLPTECTICGLTLVSSPHLARSYHHLFPIAPFDEVPALSSLNDNRRKLG 361

Query: 363 KVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSAT 422
           K CFGCQ++    G GN P   V+C KCK +FCLDCDIYIHESLHNCPGCES  RPKS +
Sbjct: 362 KSCFGCQQSLI--GAGNKPVPCVTCRKCKHYFCLDCDIYIHESLHNCPGCESIHRPKSVS 417

[Close]

BLAST of Carg12311 vs. ExPASy Swiss-Prot
Match: Q2TBV5 (General transcription factor IIH subunit 2 OS=Bos taurus OX=9913 GN=GTF2H2 PE=2 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 7.4e-90
Identity = 166/396 (41.92%), Postives = 240/396 (60.61%), Query Frame = 0


Query: 29  WERTYADDRSWEALQEDESGLLRPIDNKAIFHAQYRRRLRSLSSLATTARIQKGLIRYLY 88
           WE  Y  +R+WE L+EDESG L+      +F A+ +R            +++ G++R+LY
Sbjct: 11  WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEH------HGQVRLGMMRHLY 70

Query: 89  VVIDFSRAAAEMDFRPSRMAVVAKHVEAFVREFFDQNPLSQIGLVTIKDGVAHSLTDLGG 148
           VV+D SR   + D +P+R+    K +E FV E+FDQNP+SQIG++  K   A  LT+L G
Sbjct: 71  VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 130

Query: 149 SPESHVKALMGKLE--CSGEASLQNGLDLVCGYLSQIPSYGHREVLILYSALNSCDPGDI 208
           +P  H+ +L   ++  C GE SL N L +    L  +P +  REVLI++S+L +CDP +I
Sbjct: 131 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 190

Query: 209 METVQKCKTSKIRCSVIGLTAELFICRHLCQETGGSYSVALDESHFKELLLEHAPPPPAI 268
            + ++  K +KIR S+IGL+AE+ +C  L +ETGG+Y V LDESH+KELL  H  PPPA 
Sbjct: 191 YDLIKSLKAAKIRVSIIGLSAEVRVCTALARETGGTYHVILDESHYKELLTHHVSPPPAS 250

Query: 269 ADSAMPNLIKMGFPQRA--------GESSIAICSCHKEAKVG---GGYTCPRCKARVCEL 328
           ++S   +LI+MGFPQ           + S ++       + G   GGY CP+C+A+ CEL
Sbjct: 251 SNSEC-SLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCPQCRAKYCEL 310

Query: 329 PTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQLPKVCFGCQENFTNPG 388
           P EC+ICGLTL+S+PHLARSYHHLFP+  F E+  +      H   + C+ CQ    +  
Sbjct: 311 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLE-----EHNGERFCYACQGELKDQH 370

Query: 389 TGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGC 412
                     C  C+  FC+DCD+++H+SLH CPGC
Sbjct: 371 V-------YVCSVCQNVFCVDCDVFVHDSLHCCPGC 385

[Close]

BLAST of Carg12311 vs. ExPASy Swiss-Prot
Match: Q13888 (General transcription factor IIH subunit 2 OS=Homo sapiens OX=9606 GN=GTF2H2 PE=1 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 1.3e-89
Identity = 168/396 (42.42%), Postives = 242/396 (61.11%), Query Frame = 0


Query: 29  WERTYADDRSWEALQEDESGLLRPIDNKAIFHAQYRRRLRSLSSLATTARIQKGLIRYLY 88
           WE  Y  +R+WE L+EDESG L+      +F A+ +R            +++ G++R+LY
Sbjct: 11  WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEH------HGQVRLGMMRHLY 70

Query: 89  VVIDFSRAAAEMDFRPSRMAVVAKHVEAFVREFFDQNPLSQIGLVTIKDGVAHSLTDLGG 148
           VV+D SR   + D +P+R+    K +E FV E+FDQNP+SQIG++  K   A  LT+L G
Sbjct: 71  VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 130

Query: 149 SPESHVKALMGKLE--CSGEASLQNGLDLVCGYLSQIPSYGHREVLILYSALNSCDPGDI 208
           +P  H+ +L   ++  C GE SL N L +    L  +P +  REVLI++S+L +CDP +I
Sbjct: 131 NPRKHITSLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 190

Query: 209 METVQKCKTSKIRCSVIGLTAELFICRHLCQETGGSYSVALDESHFKELLLEHAPPPPAI 268
            + ++  K +KIR SVIGL+AE+ +C  L +ETGG+Y V LDESH+KELL  H  PPPA 
Sbjct: 191 YDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPA- 250

Query: 269 ADSAMPNLIKMGFPQRA--------GESSIAICSCHKEAKVG---GGYTCPRCKARVCEL 328
           + S+  +LI+MGFPQ           + S ++       + G   GGY CP+C+A+ CEL
Sbjct: 251 SSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCEL 310

Query: 329 PTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQLPKVCFGCQENFTNPG 388
           P EC+ICGLTL+S+PHLARSYHHLFP+  F E+  + ++  R      C+GCQ    +  
Sbjct: 311 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYNGER-----FCYGCQGELKDQH 370

Query: 389 TGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGC 412
                     C  C+  FC+DCD+++H+SLH CPGC
Sbjct: 371 V-------YVCAVCQNVFCVDCDVFVHDSLHCCPGC 385

[Close]

BLAST of Carg12311 vs. ExPASy Swiss-Prot
Match: Q6P1K8 (General transcription factor IIH subunit 2-like protein OS=Homo sapiens OX=9606 GN=GTF2H2C PE=1 SV=1)

HSP 1 Score: 331.3 bits (848), Expect = 1.7e-89
Identity = 168/396 (42.42%), Postives = 242/396 (61.11%), Query Frame = 0


Query: 29  WERTYADDRSWEALQEDESGLLRPIDNKAIFHAQYRRRLRSLSSLATTARIQKGLIRYLY 88
           WE  Y  +R+WE L+EDESG L+      +F A+ +R            +++ G++R+LY
Sbjct: 11  WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEH------HGQVRLGMMRHLY 70

Query: 89  VVIDFSRAAAEMDFRPSRMAVVAKHVEAFVREFFDQNPLSQIGLVTIKDGVAHSLTDLGG 148
           VV+D SR   + D +P+R+    K +E FV E+FDQNP+SQIG++  K   A  LT+L G
Sbjct: 71  VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 130

Query: 149 SPESHVKALMGKLE--CSGEASLQNGLDLVCGYLSQIPSYGHREVLILYSALNSCDPGDI 208
           +P  H+ +L   ++  C GE SL N L +    L  +P +  REVLI++S+L +CDP +I
Sbjct: 131 NPRKHITSLKEAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 190

Query: 209 METVQKCKTSKIRCSVIGLTAELFICRHLCQETGGSYSVALDESHFKELLLEHAPPPPAI 268
            + ++  K +KIR SVIGL+AE+ +C  L +ETGG+Y V LDESH+KELL  H  PPPA 
Sbjct: 191 YDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHLSPPPA- 250

Query: 269 ADSAMPNLIKMGFPQRA--------GESSIAICSCHKEAKVG---GGYTCPRCKARVCEL 328
           + S+  +LI+MGFPQ           + S ++       + G   GGY CP+C+A+ CEL
Sbjct: 251 SSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCEL 310

Query: 329 PTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQLPKVCFGCQENFTNPG 388
           P EC+ICGLTL+S+PHLARSYHHLFP+  F E+  + ++  R      C+GCQ    +  
Sbjct: 311 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYNGER-----FCYGCQGELKDQH 370

Query: 389 TGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGC 412
                     C  C+  FC+DCD+++H+SLH CPGC
Sbjct: 371 V-------YVCAVCQNVFCVDCDVFVHDSLHCCPGC 385

[Close]

BLAST of Carg12311 vs. ExPASy Swiss-Prot
Match: Q9JIB4 (General transcription factor IIH subunit 2 OS=Mus musculus OX=10090 GN=Gtf2h2 PE=1 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 6.3e-89
Identity = 167/397 (42.07%), Postives = 242/397 (60.96%), Query Frame = 0


Query: 29  WERTYADDRSWEALQEDESGLLRPIDNKAIFHAQYRRRLRSLSSLATTARIQKGLIRYLY 88
           WE  Y  +R+WE L+EDE+G L+      +F A+ +R            +++ G++R+LY
Sbjct: 11  WEGGY--ERTWEILKEDETGSLKATIEDILFKAKRKRVFEH------HGQVRLGMMRHLY 70

Query: 89  VVIDFSRAAAEMDFRPSRMAVVAKHVEAFVREFFDQNPLSQIGLVTIKDGVAHSLTDLGG 148
           VV+D SR   + D +P+R+    K +E FV E+FDQNP+SQIG++  K   A  LT+L G
Sbjct: 71  VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 130

Query: 149 SPESHVKALMGKLE--CSGEASLQNGLDLVCGYLSQIPSYGHREVLILYSALNSCDPGDI 208
           +P  H+ +L   ++  C GE SL N L +    L  +P +  REVLI++S+L +CDP +I
Sbjct: 131 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 190

Query: 209 METVQKCKTSKIRCSVIGLTAELFICRHLCQETGGSYSVALDESHFKELLLEHAPPPPAI 268
            + ++  KT+KIR SVIGL+AE+ +C  L +ETGG+Y V LDE+H+KELL  H  PPPA 
Sbjct: 191 YDLIKTLKTAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDETHYKELLAHHVSPPPA- 250

Query: 269 ADSAMPNLIKMGFPQRA------GESSIAICSCH------KEAKVGGGYTCPRCKARVCE 328
           + S+  +LI+MGFPQ         ++  +    H      +     GGY CP+C+A+ CE
Sbjct: 251 SSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDNNSTEPGLTLGGYFCPQCRAKYCE 310

Query: 329 LPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQLPKVCFGCQENFTNP 388
           LP EC+ICGLTL+S+PHLARSYHHLFP+  F E+S + +   R      C+GCQ    + 
Sbjct: 311 LPVECKICGLTLVSAPHLARSYHHLFPLDAFQEISLEEYKGER-----FCYGCQGELKDQ 370

Query: 389 GTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGC 412
                      C  C+  FC+DCD+++H+SLH CPGC
Sbjct: 371 HV-------YVCTVCQNVFCVDCDVFVHDSLHCCPGC 386

[Close]

BLAST of Carg12311 vs. ExPASy TrEMBL
Match: A0A6J1GC53 (General transcription factor IIH subunit OS=Cucurbita moschata OX=3662 GN=LOC111452792 PE=3 SV=1)

HSP 1 Score: 878.6 bits (2269), Expect = 1.0e-251
Identity = 423/424 (99.76%), Postives = 424/424 (100.00%), Query Frame = 0


Query: 1   MNNGENRRLNGEAEEEDDDDDANGGMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFH 60
           MNNGENRRLNGEAEEEDDDDDANGGMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFH
Sbjct: 1   MNNGENRRLNGEAEEEDDDDDANGGMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFH 60

Query: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE 120
           AQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE
Sbjct: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE 120

Query: 121 FFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL 180
           FFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL
Sbjct: 121 FFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL 180

Query: 181 SQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETG 240
           +QIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETG
Sbjct: 181 NQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETG 240

Query: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVG 300
           GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVG
Sbjct: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVG 300

Query: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQL 360
           GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQL
Sbjct: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQL 360

Query: 361 PKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA 420
           PKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA
Sbjct: 361 PKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA 420

Query: 421 TSDD 425
           TSDD
Sbjct: 421 TSDD 424

[Close]

BLAST of Carg12311 vs. ExPASy TrEMBL
Match: A0A6J1K980 (General transcription factor IIH subunit OS=Cucurbita maxima OX=3661 GN=LOC111493405 PE=3 SV=1)

HSP 1 Score: 876.3 bits (2263), Expect = 5.1e-251
Identity = 422/424 (99.53%), Postives = 423/424 (99.76%), Query Frame = 0


Query: 1   MNNGENRRLNGEAEEEDDDDDANGGMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFH 60
           MNNGENRRLNGEAEEEDDDDDANGGMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFH
Sbjct: 1   MNNGENRRLNGEAEEEDDDDDANGGMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFH 60

Query: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE 120
           AQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE
Sbjct: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE 120

Query: 121 FFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL 180
           FFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL
Sbjct: 121 FFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL 180

Query: 181 SQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETG 240
           +QIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETG
Sbjct: 181 NQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETG 240

Query: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVG 300
           GSY VALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVG
Sbjct: 241 GSYLVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVG 300

Query: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQL 360
           GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQL
Sbjct: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQL 360

Query: 361 PKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA 420
           PKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA
Sbjct: 361 PKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA 420

Query: 421 TSDD 425
           TSDD
Sbjct: 421 TSDD 424

[Close]

BLAST of Carg12311 vs. ExPASy TrEMBL
Match: A0A6J1DUE2 (General transcription factor IIH subunit OS=Momordica charantia OX=3673 GN=LOC111024539 PE=3 SV=1)

HSP 1 Score: 836.3 bits (2159), Expect = 5.8e-239
Identity = 398/424 (93.87%), Postives = 413/424 (97.41%), Query Frame = 0


Query: 1   MNNGENRRLNGEAEEEDDDDDANGGMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFH 60
           MNNGE  RLNGEA+EEDDDDD NGG+AAWERTYADDRSWEALQEDESGLLRPIDNKAI+H
Sbjct: 1   MNNGEGSRLNGEADEEDDDDDGNGGLAAWERTYADDRSWEALQEDESGLLRPIDNKAIYH 60

Query: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE 120
           AQYRRRLRSLSS+ATTARIQKGLIRYLY+VIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE
Sbjct: 61  AQYRRRLRSLSSIATTARIQKGLIRYLYIVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE 120

Query: 121 FFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL 180
           FFDQNPLSQIGLVTIKDGVAH LTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL
Sbjct: 121 FFDQNPLSQIGLVTIKDGVAHCLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL 180

Query: 181 SQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETG 240
           +QIPSYGHREVLILYSALNSCDPGDIMET+QKCKTSKIRCSVIGLTAE+FICRHLCQETG
Sbjct: 181 NQIPSYGHREVLILYSALNSCDPGDIMETIQKCKTSKIRCSVIGLTAEIFICRHLCQETG 240

Query: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVG 300
           GSYS+ALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRA ESSIAICSCHKEAKVG
Sbjct: 241 GSYSIALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVG 300

Query: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQL 360
           GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDK+ +DPRH+L
Sbjct: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVLNDPRHRL 360

Query: 361 PKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA 420
           PKVCFGCQE+  N GTGNS GIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA
Sbjct: 361 PKVCFGCQESLMNSGTGNSQGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA 420

Query: 421 TSDD 425
            S++
Sbjct: 421 ASNE 424

[Close]

BLAST of Carg12311 vs. ExPASy TrEMBL
Match: A0A5A7UNG8 (General transcription factor IIH subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G001400 PE=3 SV=1)

HSP 1 Score: 830.5 bits (2144), Expect = 3.2e-237
Identity = 398/424 (93.87%), Postives = 412/424 (97.17%), Query Frame = 0


Query: 1   MNNGENRRLNGEAEEEDDDDDANGGMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFH 60
           MNNGENRRLNGEA+EEDDDDDAN G+AAWERTYADDRSWEALQEDESGLL PIDNKAI+H
Sbjct: 1   MNNGENRRLNGEADEEDDDDDAN-GLAAWERTYADDRSWEALQEDESGLLCPIDNKAIYH 60

Query: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE 120
           AQYRRRLR+LSSLATTARIQKGLIRYLY+VIDFS+AA EMDFRPSRMAVVAKHVEAFVRE
Sbjct: 61  AQYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVEAFVRE 120

Query: 121 FFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL 180
           FFDQNPLSQIGLVTIKDGVAH LTDLGGSPESHVKALMGKLECSG+ASLQNGL+LV  YL
Sbjct: 121 FFDQNPLSQIGLVTIKDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYL 180

Query: 181 SQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETG 240
           +QIPSYGHREVL+LYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAE+FICRHLCQETG
Sbjct: 181 NQIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETG 240

Query: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVG 300
           GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRA ESSIAICSCHKEAKVG
Sbjct: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVG 300

Query: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQL 360
           GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDK+FHDPRHQL
Sbjct: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQL 360

Query: 361 PKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA 420
           PKVCFGCQE+  NPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFR PK A
Sbjct: 361 PKVCFGCQESLMNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRHPKLA 420

Query: 421 TSDD 425
           T D+
Sbjct: 421 TFDE 423

[Close]

BLAST of Carg12311 vs. ExPASy TrEMBL
Match: A0A0A0KPM4 (General transcription factor IIH subunit OS=Cucumis sativus OX=3659 GN=Csa_5G169080 PE=3 SV=1)

HSP 1 Score: 827.4 bits (2136), Expect = 2.7e-236
Identity = 396/424 (93.40%), Postives = 412/424 (97.17%), Query Frame = 0


Query: 1   MNNGENRRLNGEAEEEDDDDDANGGMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFH 60
           MNNGENRRLNGEA+EEDDDDDAN G+AAWERTYADDRSWEALQEDESGLLRPIDNKAI+H
Sbjct: 1   MNNGENRRLNGEADEEDDDDDAN-GLAAWERTYADDRSWEALQEDESGLLRPIDNKAIYH 60

Query: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE 120
           AQYRRRLR+LSSLATTARIQKGLIRYLY+VIDFS+AA EMDFRPSRMAVVAKHV+AFVRE
Sbjct: 61  AQYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVDAFVRE 120

Query: 121 FFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL 180
           FFDQNPLSQIGLVTIKDG A+ LTDLGGSPESHVKALMGKLECSG+ASLQNGL+LV  YL
Sbjct: 121 FFDQNPLSQIGLVTIKDGFANCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYL 180

Query: 181 SQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETG 240
           +QIPSYGHREVL+LYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAE+FICRHLCQETG
Sbjct: 181 NQIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETG 240

Query: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVG 300
           GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRA ESSIAICSCHKEAKVG
Sbjct: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVG 300

Query: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQL 360
           GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDK+FHDPRHQL
Sbjct: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQL 360

Query: 361 PKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA 420
           PKVCFGCQE+  NP TGNSP IRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPK A
Sbjct: 361 PKVCFGCQESLMNPSTGNSPSIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKLA 420

Query: 421 TSDD 425
           TSD+
Sbjct: 421 TSDE 423

[Close]

BLAST of Carg12311 vs. TAIR 10
Match: AT1G05055.1 (general transcription factor II H2 )

HSP 1 Score: 656.4 bits (1692), Expect = 1.6e-188
Identity = 314/420 (74.76%), Postives = 358/420 (85.24%), Query Frame = 0


Query: 3   NGENRRLNGEAEEEDDDDDANGGMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFHAQ 62
           + + +R N E EEEDD+D    G+  WER Y DDRSWE LQEDESGLLRPIDN AI+HAQ
Sbjct: 2   SNQRKRSNDEREEEDDEDAE--GIGEWERAYVDDRSWEELQEDESGLLRPIDNSAIYHAQ 61

Query: 63  YRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVREFF 122
           YRRRLR LS+ A   RIQKGLIRYLY+VIDFSRAAAEMDFRPSRMA++AKHVEAF+REFF
Sbjct: 62  YRRRLRMLSAAAAGTRIQKGLIRYLYIVIDFSRAAAEMDFRPSRMAIMAKHVEAFIREFF 121

Query: 123 DQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYLSQ 182
           DQNPLSQIGLV+IK+GVAH+LTDLGGSPE+H+KALMGKLE  G++SLQN L+LV  +L+Q
Sbjct: 122 DQNPLSQIGLVSIKNGVAHTLTDLGGSPETHIKALMGKLEALGDSSLQNALELVHEHLNQ 181

Query: 183 IPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETGGS 242
           +PSYGHREVLILYSAL +CDPGDIMET+QKCK SK+RCSVIGL+AE+FIC+HLCQETGG 
Sbjct: 182 VPSYGHREVLILYSALCTCDPGDIMETIQKCKKSKLRCSVIGLSAEMFICKHLCQETGGL 241

Query: 243 YSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVGGG 302
           YSVA+DE H K+LLLEHAPPPPAIA+ A+ NLIKMGFPQRA E S+AICSCHKE K+G G
Sbjct: 242 YSVAVDEVHLKDLLLEHAPPPPAIAEFAIANLIKMGFPQRAAEGSMAICSCHKEVKIGAG 301

Query: 303 YTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEV-SDKLFHDPRHQLP 362
           Y CPRCKARVC+LPTEC ICGLTL+SSPHLARSYHHLFPI PFDEV +    +D R +L 
Sbjct: 302 YMCPRCKARVCDLPTECTICGLTLVSSPHLARSYHHLFPIAPFDEVPALSSLNDNRRKLG 361

Query: 363 KVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSAT 422
           K CFGCQ++    G GN P   V+C KCK +FCLDCDIYIHESLHNCPGCES  RPKS +
Sbjct: 362 KSCFGCQQSLI--GAGNKPVPCVTCRKCKHYFCLDCDIYIHESLHNCPGCESIHRPKSVS 417

The following BLAST results are available for this feature:

BLAST of Carg12311 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7036868.1	9.5e-252	100.00	General transcription factor IIH subunit 2 [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022949453.1	2.1e-251	99.76	general transcription factor IIH subunit 2 [Cucurbita moschata] >XP_023525764.1 ...	[more]
XP_022998882.1	1.1e-250	99.53	general transcription factor IIH subunit 2 [Cucurbita maxima]	[more]
XP_038874496.1	3.4e-241	95.05	general transcription factor IIH subunit 2 isoform X1 [Benincasa hispida]	[more]
XP_022157930.1	1.2e-238	93.87	general transcription factor IIH subunit 2 [Momordica charantia]	[more]

BLAST of Carg12311 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZVN9	2.2e-187	74.76	General transcription factor IIH subunit 2 OS=Arabidopsis thaliana OX=3702 GN=GT...	[more]
Q2TBV5	7.4e-90	41.92	General transcription factor IIH subunit 2 OS=Bos taurus OX=9913 GN=GTF2H2 PE=2 ...	[more]
Q13888	1.3e-89	42.42	General transcription factor IIH subunit 2 OS=Homo sapiens OX=9606 GN=GTF2H2 PE=...	[more]
Q6P1K8	1.7e-89	42.42	General transcription factor IIH subunit 2-like protein OS=Homo sapiens OX=9606 ...	[more]
Q9JIB4	6.3e-89	42.07	General transcription factor IIH subunit 2 OS=Mus musculus OX=10090 GN=Gtf2h2 PE...	[more]

BLAST of Carg12311 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GC53	1.0e-251	99.76	General transcription factor IIH subunit OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1K980	5.1e-251	99.53	General transcription factor IIH subunit OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A6J1DUE2	5.8e-239	93.87	General transcription factor IIH subunit OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A5A7UNG8	3.2e-237	93.87	General transcription factor IIH subunit OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A0A0KPM4	2.7e-236	93.40	General transcription factor IIH subunit OS=Cucumis sativus OX=3659 GN=Csa_5G169...	[more]

BLAST of Carg12311 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05055.1	1.6e-188	74.76	general transcription factor II H2	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002035	von Willebrand factor, type A	SMART	SM00327	VWA_4	coord: 84..260 e-value: 8.5E-12 score: 55.2
IPR002035	von Willebrand factor, type A	PROSITE	PS50234	VWFA	coord: 86..225 score: 8.932077
IPR004595	TFIIH C1-like domain	SMART	SM01047	C1_4_2	coord: 363..413 e-value: 5.2E-21 score: 85.8
IPR004595	TFIIH C1-like domain	PFAM	PF07975	C1_4	coord: 364..413 e-value: 2.3E-19 score: 69.3
IPR007198	Ssl1-like	PFAM	PF04056	Ssl1	coord: 90..280 e-value: 1.3E-85 score: 286.1
IPR007198	Ssl1-like	CDD	cd01453	vWA_transcription_factor_IIH_type	coord: 82..264 e-value: 3.02339E-103 score: 302.327
IPR036465	von Willebrand factor A-like domain superfamily	GENE3D	3.40.50.410	von Willebrand factor, type A domain	coord: 80..265 e-value: 5.0E-70 score: 236.9
IPR036465	von Willebrand factor A-like domain superfamily	SUPERFAMILY	53300	vWA-like	coord: 82..249
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 340..420 e-value: 2.0E-20 score: 74.5
IPR012170	TFIIH subunit Ssl1/p44	PIRSF	PIRSF015919	TFIIH_SSL1	coord: 1..414 e-value: 6.2E-161 score: 533.8
IPR012170	TFIIH subunit Ssl1/p44	TIGRFAM	TIGR00622	TIGR00622	coord: 302..413 e-value: 9.3E-38 score: 127.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	PANTHER	PTHR12695	GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2	coord: 19..411
None	No IPR available	SUPERFAMILY	57889	Cysteine-rich domain	coord: 337..412
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 386..406

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12311-RA	Carg12311-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006289	nucleotide-excision repair
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
biological_process	GO:0006281	DNA repair
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0000439	transcription factor TFIIH core complex
cellular_component	GO:0005675	transcription factor TFIIH holo complex
molecular_function	GO:0008270	zinc ion binding