Carg12306 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg12306
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Ubiquitin carboxyl-terminal hydrolase
Location	Carg_Chr01: 2832214 .. 2833723 (+)
RNA-Seq Expression	Carg12306
Synteny	Carg12306

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGATTTGATTCGTCGTTGCTCCTTCTCTGCTCAGAAGTCAGAACTGGTTTCGTCATCGGACGAGGGTTTTGGGTAACCAGCAGGAGACGGGTTGAATTGTGGAGCCATATTCTTTGAAAATGAAAGAAAATTAGTTTAGCTCATCTGTTTGGTTACTGAGGAATATCAACAAAAATCCAGCTCTTCCTTGAAGTCGAAGCATTTTTTTTTTTCGATCTCAGGGGAAAGGGGCGGGAAGATGGCTGAAGTCTCCATGTGTAGCAGTAGTGGCAGCACGGAGCTCACTCCAGAGGAAGAGAGGATTATGATCAGGGACATTGCTTTGGCTGCTGAAGCTAATACTAAAGAGGGTGATGTCTTCTATTTAATCACTCAAAGGTTCTTCCTCCCACACTTTCTCTTAAATCCGTAGATATTATGGTTCTTGCTAGATTTCCTTCGTTTTTCTTATAAATTTTTTGCACAATTTGTGTTAGAGACGTTTCTTATCGACCCTTACTCTGTTGTCGTTGTTCTTCCCCCTCTTTTGGGTTCTCCCTGCTTTTGTTCATATTTGCTACCTCCAATATGTACATATATTGCTATCTGGGGGACTAATGTGATATCTTTTATCGCCTCTAGTGAAATTCTAACCATTTATGAAGAATTTCATTGTGTTGCCTTCTAGGCCCAAGCTTTGTTCTTTTTCCATTGGGGGATTGAATGTCATAGGCTTGCTGTTTAATGTAAGAGGTAACAGTTTTGGTCTTAGTGATATGGTGGGAGTAAGCTGGAGCAATAAAATGAAAGTGATATGTTTTGTTTTGGTTCAAGAAAATCTTACTATGGTTTTTGATAAACATGCTTGTGTGCAATGTCCTTAAGAGTCGGCCTATTCATGAACATTCAGGTATAAGATTCTACCTCTCAACCAGGTAGCTGATAGACATTTTCTGATGATTGTATATTGTGGTGACAGATGGTGGCAACACTGGATTGAATATGTCAACCAAGACCAACCGGTTGGTGGTGCAAACGATGGATCCTCCTTCGCAGAAATTTACGATTCATTTGGTTCAAGCATGTTAAAAAGACCAGCTATTATTGATAACTCTGACCTAATTTACGATGCTGCATCAGAGGACTCTGGTATGGGCATTGAAATTCACGATACTCTTTTGGAAGGTCGTGATTATGTTCTGCTTCCGCAAGAAGTGTGGAACCAACTATACTTGTGGTGAGTCATTAGGAAAAAGGATTTTGGCCATTGAAAAGTAGATTTTTATAATAGTAAATGAAATAACTCCTAGTCAAAGCACAGTGTCCATTCTAACAAACTAAGCTCTTAAACCTGGTCTTTCAGCTACAACATAGAATATCGCTTGTGGTGGATCAGTTCAGAAAAGGTTTTCGGTCATAGAAACATCGATTTCCTTTGTTTTGTTTTGTTTTTATTTCTTTAGCTTTGCTGAAGCCCTCAGCATGGATGGAGTAATTACTATAAAGTTGGGGACTGGGACTGGACTCTAA

mRNA sequence

AAGATTTGATTCGTCGTTGCTCCTTCTCTGCTCAGAAGTCAGAACTGGTTTCGTCATCGGACGAGGGTTTTGGGTAACCAGCAGGAGACGGGTTGAATTGTGGAGCCATATTCTTTGAAAATGAAAGAAAATTAGTTTAGCTCATCTGTTTGGTTACTGAGGAATATCAACAAAAATCCAGCTCTTCCTTGAAGTCGAAGCATTTTTTTTTTTCGATCTCAGGGGAAAGGGGCGGGAAGATGGCTGAAGTCTCCATGTGTAGCAGTAGTGGCAGCACGGAGCTCACTCCAGAGGAAGAGAGGATTATGATCAGGGACATTGCTTTGGCTGCTGAAGCTAATACTAAAGAGGGTGATGTCTTCTATTTAATCACTCAAAGATGGTGGCAACACTGGATTGAATATGTCAACCAAGACCAACCGGTTGGTGGTGCAAACGATGGATCCTCCTTCGCAGAAATTTACGATTCATTTGGTTCAAGCATGTTAAAAAGACCAGCTATTATTGATAACTCTGACCTAATTTACGATGCTGCATCAGAGGACTCTGGTATGGGCATTGAAATTCACGATACTCTTTTGGAAGGTCGTGATTATGTTCTGCTTCCGCAAGAAGTGTGGAACCAACTATACTTGTGCTTTGCTGAAGCCCTCAGCATGGATGGAGTAATTACTATAAAGTTGGGGACTGGGACTGGACTCTAA

Coding sequence (CDS)

ATGGCTGAAGTCTCCATGTGTAGCAGTAGTGGCAGCACGGAGCTCACTCCAGAGGAAGAGAGGATTATGATCAGGGACATTGCTTTGGCTGCTGAAGCTAATACTAAAGAGGGTGATGTCTTCTATTTAATCACTCAAAGATGGTGGCAACACTGGATTGAATATGTCAACCAAGACCAACCGGTTGGTGGTGCAAACGATGGATCCTCCTTCGCAGAAATTTACGATTCATTTGGTTCAAGCATGTTAAAAAGACCAGCTATTATTGATAACTCTGACCTAATTTACGATGCTGCATCAGAGGACTCTGGTATGGGCATTGAAATTCACGATACTCTTTTGGAAGGTCGTGATTATGTTCTGCTTCCGCAAGAAGTGTGGAACCAACTATACTTGTGCTTTGCTGAAGCCCTCAGCATGGATGGAGTAATTACTATAAAGTTGGGGACTGGGACTGGACTCTAA

Protein sequence

MAEVSMCSSSGSTELTPEEERIMIRDIALAAEANTKEGDVFYLITQRWWQHWIEYVNQDQPVGGANDGSSFAEIYDSFGSSMLKRPAIIDNSDLIYDAASEDSGMGIEIHDTLLEGRDYVLLPQEVWNQLYLCFAEALSMDGVITIKLGTGTGL

Homology

[Close]

BLAST of Carg12306 vs. NCBI nr
Match: KAG7036863.1 (Ubiquitin carboxyl-terminal hydrolase 5 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 314.3 bits (804), Expect = 5.8e-82
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MAEVSMCSSSGSTELTPEEERIMIRDIALAAEANTKEGDVFYLITQRWWQHWIEYVNQDQ 60
           MAEVSMCSSSGSTELTPEEERIMIRDIALAAEANTKEGDVFYLITQRWWQHWIEYVNQDQ
Sbjct: 1   MAEVSMCSSSGSTELTPEEERIMIRDIALAAEANTKEGDVFYLITQRWWQHWIEYVNQDQ 60

Query: 61  PVGGANDGSSFAEIYDSFGSSMLKRPAIIDNSDLIYDAASEDSGMGIEIHDTLLEGRDYV 120
           PVGGANDGSSFAEIYDSFGSSMLKRPAIIDNSDLIYDAASEDSGMGIEIHDTLLEGRDYV
Sbjct: 61  PVGGANDGSSFAEIYDSFGSSMLKRPAIIDNSDLIYDAASEDSGMGIEIHDTLLEGRDYV 120

Query: 121 LLPQEVWNQLYLCFAEALSMDGVITIKLGTGTGL 155
           LLPQEVWNQLYLCFAEALSMDGVITIKLGTGTGL
Sbjct: 121 LLPQEVWNQLYLCFAEALSMDGVITIKLGTGTGL 154

[Close]

BLAST of Carg12306 vs. NCBI nr
Match: KAG6607177.1 (Ubiquitin carboxyl-terminal hydrolase 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 271.6 bits (693), Expect = 4.3e-69
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 1   MAEVSMCSSSGSTELTPEEERIMIRDIALAAEANTKEGDVFYLITQRWWQHWIEYVNQDQ 60
           MAEVSMCSSSGSTELTPEEERIMIRDIALAAEANTKEGDVFYLITQRWWQHWIEYVNQDQ
Sbjct: 1   MAEVSMCSSSGSTELTPEEERIMIRDIALAAEANTKEGDVFYLITQRWWQHWIEYVNQDQ 60

Query: 61  PVGGANDGSSFAEIYDSFGSSMLKRPAIIDNSDLIYDAASEDSGMGIEIHDTLLEGRDYV 120
           PVGGANDGSSFAEIYDSFGSSMLKRPAIIDNSDLIYDAASEDSGMGIEIHDTLLEGRDYV
Sbjct: 61  PVGGANDGSSFAEIYDSFGSSMLKRPAIIDNSDLIYDAASEDSGMGIEIHDTLLEGRDYV 120

Query: 121 LLPQEVWNQLYLCF 135
           LLPQEVWNQLYL +
Sbjct: 121 LLPQEVWNQLYLWY 134

[Close]

BLAST of Carg12306 vs. NCBI nr
Match: XP_022948514.1 (ubiquitin carboxyl-terminal hydrolase 5 [Cucurbita moschata])

HSP 1 Score: 271.6 bits (693), Expect = 4.3e-69
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 1   MAEVSMCSSSGSTELTPEEERIMIRDIALAAEANTKEGDVFYLITQRWWQHWIEYVNQDQ 60
           MAEVSMCSSSGSTELTPEEERIMIRDIALAAEANTKEGDVFYLITQRWWQHWIEYVNQDQ
Sbjct: 1   MAEVSMCSSSGSTELTPEEERIMIRDIALAAEANTKEGDVFYLITQRWWQHWIEYVNQDQ 60

Query: 61  PVGGANDGSSFAEIYDSFGSSMLKRPAIIDNSDLIYDAASEDSGMGIEIHDTLLEGRDYV 120
           PVGGANDGSSFAEIYDSFGSSMLKRPAIIDNSDLIYDAASEDSGMGIEIHDTLLEGRDYV
Sbjct: 61  PVGGANDGSSFAEIYDSFGSSMLKRPAIIDNSDLIYDAASEDSGMGIEIHDTLLEGRDYV 120

Query: 121 LLPQEVWNQLYLCF 135
           LLPQEVWNQLYL +
Sbjct: 121 LLPQEVWNQLYLWY 134

[Close]

BLAST of Carg12306 vs. NCBI nr
Match: XP_022998841.1 (ubiquitin carboxyl-terminal hydrolase 5 [Cucurbita maxima])

HSP 1 Score: 270.0 bits (689), Expect = 1.3e-68
Identity = 131/134 (97.76%), Postives = 132/134 (98.51%), Query Frame = 0


Query: 1   MAEVSMCSSSGSTELTPEEERIMIRDIALAAEANTKEGDVFYLITQRWWQHWIEYVNQDQ 60
           MAEVSMCSSSGSTELTPEEERIMIRDIALAAEANTKEGDVFYLITQRWWQHWIEYVNQDQ
Sbjct: 1   MAEVSMCSSSGSTELTPEEERIMIRDIALAAEANTKEGDVFYLITQRWWQHWIEYVNQDQ 60

Query: 61  PVGGANDGSSFAEIYDSFGSSMLKRPAIIDNSDLIYDAASEDSGMGIEIHDTLLEGRDYV 120
           PVGGANDGSSFAEIYDSFGSSMLKRPAIIDNSDLIYDA SEDSGMGIEIHDTLLEGRDYV
Sbjct: 61  PVGGANDGSSFAEIYDSFGSSMLKRPAIIDNSDLIYDAGSEDSGMGIEIHDTLLEGRDYV 120

Query: 121 LLPQEVWNQLYLCF 135
           LLPQEVWNQLYL +
Sbjct: 121 LLPQEVWNQLYLWY 134

[Close]

BLAST of Carg12306 vs. NCBI nr
Match: XP_023521521.1 (ubiquitin carboxyl-terminal hydrolase 5-like, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 269.2 bits (687), Expect = 2.1e-68
Identity = 131/134 (97.76%), Postives = 132/134 (98.51%), Query Frame = 0


Query: 1   MAEVSMCSSSGSTELTPEEERIMIRDIALAAEANTKEGDVFYLITQRWWQHWIEYVNQDQ 60
           MAEVSMCSSSGSTELTPEEERIMIRDIALAAEANTKEGDVFYLITQRWWQHWIEYVNQDQ
Sbjct: 1   MAEVSMCSSSGSTELTPEEERIMIRDIALAAEANTKEGDVFYLITQRWWQHWIEYVNQDQ 60

Query: 61  PVGGANDGSSFAEIYDSFGSSMLKRPAIIDNSDLIYDAASEDSGMGIEIHDTLLEGRDYV 120
           PVGGANDGSS AEIYDSFGSSMLKRPAIIDNSDLIYDAASEDSGMGIEIHDTLLEGRDYV
Sbjct: 61  PVGGANDGSSLAEIYDSFGSSMLKRPAIIDNSDLIYDAASEDSGMGIEIHDTLLEGRDYV 120

Query: 121 LLPQEVWNQLYLCF 135
           LLPQEVWNQLYL +
Sbjct: 121 LLPQEVWNQLYLWY 134

[Close]

BLAST of Carg12306 vs. ExPASy Swiss-Prot
Match: O22207 (Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana OX=3702 GN=UBP5 PE=1 SV=2)

HSP 1 Score: 189.9 bits (481), Expect = 2.2e-47
Identity = 96/130 (73.85%), Postives = 107/130 (82.31%), Query Frame = 0


Query: 1   MAEVSMCSSSGSTELTPEEERIMIRDIALAAEANTKEGDVFYLITQRWWQHWIEYVNQDQ 60
           MAEVSM SSS ST+L+PEEER+ IRDIA+AAEAN+KEGD FYLITQRWWQ WIEYVNQDQ
Sbjct: 1   MAEVSMGSSSSSTDLSPEEERVFIRDIAIAAEANSKEGDTFYLITQRWWQEWIEYVNQDQ 60

Query: 61  PVGGANDGSSFAEIYDSFGSSMLKRPAIIDNSDLIYDAASEDSGMGIEIHDTLLEGRDYV 120
           P    NDGSS +E  DS GSS LK+P+ IDNSDLIYD++ ED     EI +TL EGRDYV
Sbjct: 61  PC-NTNDGSSLSEHCDSPGSSTLKKPSRIDNSDLIYDSSLEDPSNTSEIIETLQEGRDYV 120

Query: 121 LLPQEVWNQL 131
           LLPQEVWNQL
Sbjct: 121 LLPQEVWNQL 129

[Close]

BLAST of Carg12306 vs. ExPASy Swiss-Prot
Match: Q93Y01 (Ubiquitin carboxyl-terminal hydrolase 9 OS=Arabidopsis thaliana OX=3702 GN=UBP9 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.9e-13
Identity = 42/115 (36.52%), Postives = 64/115 (55.65%), Query Frame = 0


Query: 16  TPEEERIMIRDIALAAEANTKEGDVFYLITQRWWQHWIEYVNQDQPVGGANDGSSFAEIY 75
           TPEEE+ ++ ++   +E N KEG+++++I++RW+  W +YV Q              + Y
Sbjct: 20  TPEEEKRIVSELITESEDNLKEGNLYFVISKRWYTSWEKYVEQS------------TKEY 79

Query: 76  DSFGSSMLKRPAIIDNSDLIYDAASEDSGMGIEIHDTLLEGRDYVLLPQEVWNQL 131
            S  SS   RP  IDN D+I    SE      ++   L+E  DYVL+PQEVW +L
Sbjct: 80  ISGESSEASRPGPIDNHDII---ESESDVNDPQLRRLLMERVDYVLVPQEVWKRL 119

[Close]

BLAST of Carg12306 vs. ExPASy Swiss-Prot
Match: Q9ZSB5 (Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabidopsis thaliana OX=3702 GN=UBP10 PE=2 SV=2)

HSP 1 Score: 72.4 bits (176), Expect = 5.0e-12
Identity = 40/115 (34.78%), Postives = 66/115 (57.39%), Query Frame = 0


Query: 16  TPEEERIMIRDIALAAEANTKEGDVFYLITQRWWQHWIEYVNQDQPVGGANDGSSFAEIY 75
           TPEEE+ ++ ++   +E N K+G+++++I++RW+  W EYV        AN+ S+     
Sbjct: 20  TPEEEKRIVSELTSESEDNLKQGNLYFVISKRWYTSWQEYVE-----NSANECSTGE--- 79

Query: 76  DSFGSSMLKRPAIIDNSDLIYDAASEDSGMGIEIHDTLLEGRDYVLLPQEVWNQL 131
               SS   RP  IDN D+I    S+      ++   L+EG DYVL+P++VW +L
Sbjct: 80  ----SSEAPRPGPIDNHDII---ESDSDINDPQLRRLLVEGEDYVLVPKQVWKRL 119

[Close]

BLAST of Carg12306 vs. ExPASy Swiss-Prot
Match: Q9MAQ3 (Putative ubiquitin carboxyl-terminal hydrolase 11 OS=Arabidopsis thaliana OX=3702 GN=UBP11 PE=3 SV=2)

HSP 1 Score: 69.7 bits (169), Expect = 3.3e-11
Identity = 43/127 (33.86%), Postives = 65/127 (51.18%), Query Frame = 0


Query: 4   VSMCSSSGSTELTPEEERIMIRDIALAAEANTKEGDVFYLITQRWWQHWIEYVNQDQPVG 63
           + +C SS     TPEEER ++ ++   AEA+ KEG+++++I+ RW+  W  +V       
Sbjct: 10  IGVCESS----YTPEEERRIVTELNNEAEADLKEGNLYFVISNRWYTRWQRFV------- 69

Query: 64  GANDGSSFAEIYDSFGSSMLKRPAIIDNSDLIYDAASEDSGMGIEIHDTLLEGRDYVLLP 123
                    E + S   S + RP  IDN D+I    SE      ++   L EG DY L+ 
Sbjct: 70  -----GLLTEEFRSGEPSEVTRPGPIDNHDII---DSESDASDPQLRMMLEEGVDYTLVQ 117

Query: 124 QEVWNQL 131
           QEVW +L
Sbjct: 130 QEVWRKL 117

[Close]

BLAST of Carg12306 vs. ExPASy Swiss-Prot
Match: Q2HJE4 (Ubiquitin carboxyl-terminal hydrolase 15 OS=Bos taurus OX=9913 GN=USP15 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.4e-06
Identity = 33/109 (30.28%), Postives = 53/109 (48.62%), Query Frame = 0


Query: 26  DIALAAEANTKEGDVFYLITQRWWQHWIEYVNQDQ----PVGGANDGSSFAEIYDSFGSS 85
           DIA   + + ++GD +YL+  RW++ W +YV  D      +G  N       +Y      
Sbjct: 15  DIATLLKTSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQN-------VY------ 74

Query: 86  MLKRPAIIDNSDLIYDAASEDSGMGIEIHDTLLEGRDYVLLPQEVWNQL 131
               P  IDNS L+ D  ++       + + L++  DY+LLP E WN+L
Sbjct: 75  ----PGPIDNSGLLRDGDAQ------SLKEHLIDELDYILLPTEGWNKL 100

[Close]

BLAST of Carg12306 vs. ExPASy TrEMBL
Match: A0A6J1GA42 (Ubiquitin carboxyl-terminal hydrolase OS=Cucurbita moschata OX=3662 GN=LOC111452171 PE=3 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 2.1e-69
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 1   MAEVSMCSSSGSTELTPEEERIMIRDIALAAEANTKEGDVFYLITQRWWQHWIEYVNQDQ 60
           MAEVSMCSSSGSTELTPEEERIMIRDIALAAEANTKEGDVFYLITQRWWQHWIEYVNQDQ
Sbjct: 1   MAEVSMCSSSGSTELTPEEERIMIRDIALAAEANTKEGDVFYLITQRWWQHWIEYVNQDQ 60

Query: 61  PVGGANDGSSFAEIYDSFGSSMLKRPAIIDNSDLIYDAASEDSGMGIEIHDTLLEGRDYV 120
           PVGGANDGSSFAEIYDSFGSSMLKRPAIIDNSDLIYDAASEDSGMGIEIHDTLLEGRDYV
Sbjct: 61  PVGGANDGSSFAEIYDSFGSSMLKRPAIIDNSDLIYDAASEDSGMGIEIHDTLLEGRDYV 120

Query: 121 LLPQEVWNQLYLCF 135
           LLPQEVWNQLYL +
Sbjct: 121 LLPQEVWNQLYLWY 134

[Close]

BLAST of Carg12306 vs. ExPASy TrEMBL
Match: A0A6J1KBB7 (Ubiquitin carboxyl-terminal hydrolase OS=Cucurbita maxima OX=3661 GN=LOC111493383 PE=3 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 6.1e-69
Identity = 131/134 (97.76%), Postives = 132/134 (98.51%), Query Frame = 0


Query: 1   MAEVSMCSSSGSTELTPEEERIMIRDIALAAEANTKEGDVFYLITQRWWQHWIEYVNQDQ 60
           MAEVSMCSSSGSTELTPEEERIMIRDIALAAEANTKEGDVFYLITQRWWQHWIEYVNQDQ
Sbjct: 1   MAEVSMCSSSGSTELTPEEERIMIRDIALAAEANTKEGDVFYLITQRWWQHWIEYVNQDQ 60

Query: 61  PVGGANDGSSFAEIYDSFGSSMLKRPAIIDNSDLIYDAASEDSGMGIEIHDTLLEGRDYV 120
           PVGGANDGSSFAEIYDSFGSSMLKRPAIIDNSDLIYDA SEDSGMGIEIHDTLLEGRDYV
Sbjct: 61  PVGGANDGSSFAEIYDSFGSSMLKRPAIIDNSDLIYDAGSEDSGMGIEIHDTLLEGRDYV 120

Query: 121 LLPQEVWNQLYLCF 135
           LLPQEVWNQLYL +
Sbjct: 121 LLPQEVWNQLYLWY 134

[Close]

BLAST of Carg12306 vs. ExPASy TrEMBL
Match: A0A5D3CM60 (Ubiquitin carboxyl-terminal hydrolase 5 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold769G00280 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.9e-63
Identity = 124/134 (92.54%), Postives = 127/134 (94.78%), Query Frame = 0


Query: 1   MAEVSMCSSSGSTELTPEEERIMIRDIALAAEANTKEGDVFYLITQRWWQHWIEYVNQDQ 60
           MAEVSMCSSSGSTELTPEEERIMIRDIALAAEANTKEGD+FYLITQRWWQHWIEYVNQDQ
Sbjct: 1   MAEVSMCSSSGSTELTPEEERIMIRDIALAAEANTKEGDIFYLITQRWWQHWIEYVNQDQ 60

Query: 61  PVGGANDGSSFAEIYDSFGSSMLKRPAIIDNSDLIYDAASEDSGMGIEIHDTLLEGRDYV 120
           P+  ANDGSSFAEIYDSFGSSMLKRPA IDNSDLIYDAASEDS  GIEIHDTLLEGRDYV
Sbjct: 61  PI-NANDGSSFAEIYDSFGSSMLKRPASIDNSDLIYDAASEDSSAGIEIHDTLLEGRDYV 120

Query: 121 LLPQEVWNQLYLCF 135
           LLPQEVWNQL L +
Sbjct: 121 LLPQEVWNQLCLWY 133

[Close]

BLAST of Carg12306 vs. ExPASy TrEMBL
Match: A0A1S3CJL4 (Ubiquitin carboxyl-terminal hydrolase OS=Cucumis melo OX=3656 GN=LOC103501691 PE=3 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.9e-63
Identity = 124/134 (92.54%), Postives = 127/134 (94.78%), Query Frame = 0


Query: 1   MAEVSMCSSSGSTELTPEEERIMIRDIALAAEANTKEGDVFYLITQRWWQHWIEYVNQDQ 60
           MAEVSMCSSSGSTELTPEEERIMIRDIALAAEANTKEGD+FYLITQRWWQHWIEYVNQDQ
Sbjct: 1   MAEVSMCSSSGSTELTPEEERIMIRDIALAAEANTKEGDIFYLITQRWWQHWIEYVNQDQ 60

Query: 61  PVGGANDGSSFAEIYDSFGSSMLKRPAIIDNSDLIYDAASEDSGMGIEIHDTLLEGRDYV 120
           P+  ANDGSSFAEIYDSFGSSMLKRPA IDNSDLIYDAASEDS  GIEIHDTLLEGRDYV
Sbjct: 61  PI-NANDGSSFAEIYDSFGSSMLKRPASIDNSDLIYDAASEDSSAGIEIHDTLLEGRDYV 120

Query: 121 LLPQEVWNQLYLCF 135
           LLPQEVWNQL L +
Sbjct: 121 LLPQEVWNQLCLWY 133

[Close]

BLAST of Carg12306 vs. ExPASy TrEMBL
Match: A0A0A0LSJ1 (Ubiquitin carboxyl-terminal hydrolase OS=Cucumis sativus OX=3659 GN=Csa_1G087940 PE=3 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 8.5e-63
Identity = 123/134 (91.79%), Postives = 126/134 (94.03%), Query Frame = 0


Query: 1   MAEVSMCSSSGSTELTPEEERIMIRDIALAAEANTKEGDVFYLITQRWWQHWIEYVNQDQ 60
           MAEVSMCSSSGSTELTPEEERIMIRDIALAAEANTKEGD+FYLITQRWWQHWIEYVNQDQ
Sbjct: 1   MAEVSMCSSSGSTELTPEEERIMIRDIALAAEANTKEGDIFYLITQRWWQHWIEYVNQDQ 60

Query: 61  PVGGANDGSSFAEIYDSFGSSMLKRPAIIDNSDLIYDAASEDSGMGIEIHDTLLEGRDYV 120
           P+   NDGSSFAEIYDSFGSSMLKRPA IDNSDLIYDAASEDS  GIEIHDTLLEGRDYV
Sbjct: 61  PI-NTNDGSSFAEIYDSFGSSMLKRPASIDNSDLIYDAASEDSSAGIEIHDTLLEGRDYV 120

Query: 121 LLPQEVWNQLYLCF 135
           LLPQEVWNQL L +
Sbjct: 121 LLPQEVWNQLCLWY 133

[Close]

BLAST of Carg12306 vs. TAIR 10
Match: AT2G40930.1 (ubiquitin-specific protease 5 )

HSP 1 Score: 189.9 bits (481), Expect = 1.5e-48
Identity = 96/130 (73.85%), Postives = 107/130 (82.31%), Query Frame = 0


Query: 1   MAEVSMCSSSGSTELTPEEERIMIRDIALAAEANTKEGDVFYLITQRWWQHWIEYVNQDQ 60
           MAEVSM SSS ST+L+PEEER+ IRDIA+AAEAN+KEGD FYLITQRWWQ WIEYVNQDQ
Sbjct: 1   MAEVSMGSSSSSTDLSPEEERVFIRDIAIAAEANSKEGDTFYLITQRWWQEWIEYVNQDQ 60

Query: 61  PVGGANDGSSFAEIYDSFGSSMLKRPAIIDNSDLIYDAASEDSGMGIEIHDTLLEGRDYV 120
           P    NDGSS +E  DS GSS LK+P+ IDNSDLIYD++ ED     EI +TL EGRDYV
Sbjct: 61  PC-NTNDGSSLSEHCDSPGSSTLKKPSRIDNSDLIYDSSLEDPSNTSEIIETLQEGRDYV 120

Query: 121 LLPQEVWNQL 131
           LLPQEVWNQL
Sbjct: 121 LLPQEVWNQL 129

[Close]

BLAST of Carg12306 vs. TAIR 10
Match: AT4G10590.2 (ubiquitin-specific protease 10 )

HSP 1 Score: 75.5 bits (184), Expect = 4.2e-14
Identity = 42/115 (36.52%), Postives = 64/115 (55.65%), Query Frame = 0


Query: 16  TPEEERIMIRDIALAAEANTKEGDVFYLITQRWWQHWIEYVNQDQPVGGANDGSSFAEIY 75
           TPEEE+ ++ ++   +E N KEG+++++I++RW+  W +YV Q              + Y
Sbjct: 20  TPEEEKRIVSELITESEDNLKEGNLYFVISKRWYTSWEKYVEQS------------TKEY 79

Query: 76  DSFGSSMLKRPAIIDNSDLIYDAASEDSGMGIEIHDTLLEGRDYVLLPQEVWNQL 131
            S  SS   RP  IDN D+I    SE      ++   L+E  DYVL+PQEVW +L
Sbjct: 80  ISGESSEASRPGPIDNHDII---ESESDVNDPQLRRLLMERVDYVLVPQEVWKRL 119

[Close]

BLAST of Carg12306 vs. TAIR 10
Match: AT4G10590.1 (ubiquitin-specific protease 10 )

HSP 1 Score: 75.5 bits (184), Expect = 4.2e-14
Identity = 42/115 (36.52%), Postives = 64/115 (55.65%), Query Frame = 0


Query: 16  TPEEERIMIRDIALAAEANTKEGDVFYLITQRWWQHWIEYVNQDQPVGGANDGSSFAEIY 75
           TPEEE+ ++ ++   +E N KEG+++++I++RW+  W +YV Q              + Y
Sbjct: 20  TPEEEKRIVSELITESEDNLKEGNLYFVISKRWYTSWEKYVEQS------------TKEY 79

Query: 76  DSFGSSMLKRPAIIDNSDLIYDAASEDSGMGIEIHDTLLEGRDYVLLPQEVWNQL 131
            S  SS   RP  IDN D+I    SE      ++   L+E  DYVL+PQEVW +L
Sbjct: 80  ISGESSEASRPGPIDNHDII---ESESDVNDPQLRRLLMERVDYVLVPQEVWKRL 119

[Close]

BLAST of Carg12306 vs. TAIR 10
Match: AT4G10570.1 (ubiquitin-specific protease 9 )

HSP 1 Score: 72.4 bits (176), Expect = 3.6e-13
Identity = 40/115 (34.78%), Postives = 66/115 (57.39%), Query Frame = 0


Query: 16  TPEEERIMIRDIALAAEANTKEGDVFYLITQRWWQHWIEYVNQDQPVGGANDGSSFAEIY 75
           TPEEE+ ++ ++   +E N K+G+++++I++RW+  W EYV        AN+ S+     
Sbjct: 20  TPEEEKRIVSELTSESEDNLKQGNLYFVISKRWYTSWQEYVE-----NSANECSTGE--- 79

Query: 76  DSFGSSMLKRPAIIDNSDLIYDAASEDSGMGIEIHDTLLEGRDYVLLPQEVWNQL 131
               SS   RP  IDN D+I    S+      ++   L+EG DYVL+P++VW +L
Sbjct: 80  ----SSEAPRPGPIDNHDII---ESDSDINDPQLRRLLVEGEDYVLVPKQVWKRL 119

[Close]

BLAST of Carg12306 vs. TAIR 10
Match: AT1G32850.1 (ubiquitin-specific protease 11 )

HSP 1 Score: 69.7 bits (169), Expect = 2.3e-12
Identity = 43/127 (33.86%), Postives = 65/127 (51.18%), Query Frame = 0


Query: 4   VSMCSSSGSTELTPEEERIMIRDIALAAEANTKEGDVFYLITQRWWQHWIEYVNQDQPVG 63
           + +C SS     TPEEER ++ ++   AEA+ KEG+++++I+ RW+  W  +V       
Sbjct: 10  IGVCESS----YTPEEERRIVTELNNEAEADLKEGNLYFVISNRWYTRWQRFV------- 69

Query: 64  GANDGSSFAEIYDSFGSSMLKRPAIIDNSDLIYDAASEDSGMGIEIHDTLLEGRDYVLLP 123
                    E + S   S + RP  IDN D+I    SE      ++   L EG DY L+ 
Sbjct: 70  -----GLLTEEFRSGEPSEVTRPGPIDNHDII---DSESDASDPQLRMMLEEGVDYTLVQ 117

Query: 124 QEVWNQL 131
           QEVW +L
Sbjct: 130 QEVWRKL 117

The following BLAST results are available for this feature:

BLAST of Carg12306 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7036863.1	5.8e-82	100.00	Ubiquitin carboxyl-terminal hydrolase 5 [Cucurbita argyrosperma subsp. argyrospe...	[more]
KAG6607177.1	4.3e-69	98.51	Ubiquitin carboxyl-terminal hydrolase 5, partial [Cucurbita argyrosperma subsp. ...	[more]
XP_022948514.1	4.3e-69	98.51	ubiquitin carboxyl-terminal hydrolase 5 [Cucurbita moschata]	[more]
XP_022998841.1	1.3e-68	97.76	ubiquitin carboxyl-terminal hydrolase 5 [Cucurbita maxima]	[more]
XP_023521521.1	2.1e-68	97.76	ubiquitin carboxyl-terminal hydrolase 5-like, partial [Cucurbita pepo subsp. pep...	[more]

BLAST of Carg12306 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22207	2.2e-47	73.85	Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana OX=3702 GN=UBP5 ...	[more]
Q93Y01	5.9e-13	36.52	Ubiquitin carboxyl-terminal hydrolase 9 OS=Arabidopsis thaliana OX=3702 GN=UBP9 ...	[more]
Q9ZSB5	5.0e-12	34.78	Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabidopsis thaliana OX=3702 GN=UBP1...	[more]
Q9MAQ3	3.3e-11	33.86	Putative ubiquitin carboxyl-terminal hydrolase 11 OS=Arabidopsis thaliana OX=370...	[more]
Q2HJE4	1.4e-06	30.28	Ubiquitin carboxyl-terminal hydrolase 15 OS=Bos taurus OX=9913 GN=USP15 PE=2 SV=...	[more]

BLAST of Carg12306 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GA42	2.1e-69	98.51	Ubiquitin carboxyl-terminal hydrolase OS=Cucurbita moschata OX=3662 GN=LOC111452...	[more]
A0A6J1KBB7	6.1e-69	97.76	Ubiquitin carboxyl-terminal hydrolase OS=Cucurbita maxima OX=3661 GN=LOC11149338...	[more]
A0A5D3CM60	2.9e-63	92.54	Ubiquitin carboxyl-terminal hydrolase 5 isoform X1 OS=Cucumis melo var. makuwa O...	[more]
A0A1S3CJL4	2.9e-63	92.54	Ubiquitin carboxyl-terminal hydrolase OS=Cucumis melo OX=3656 GN=LOC103501691 PE...	[more]
A0A0A0LSJ1	8.5e-63	91.79	Ubiquitin carboxyl-terminal hydrolase OS=Cucumis sativus OX=3659 GN=Csa_1G087940...	[more]

BLAST of Carg12306 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G40930.1	1.5e-48	73.85	ubiquitin-specific protease 5	[more]
AT4G10590.2	4.2e-14	36.52	ubiquitin-specific protease 10	[more]
AT4G10590.1	4.2e-14	36.52	ubiquitin-specific protease 10	[more]
AT4G10570.1	3.6e-13	34.78	ubiquitin-specific protease 9	[more]
AT1G32850.1	2.3e-12	33.86	ubiquitin-specific protease 11	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006615	Peptidase C19, ubiquitin-specific peptidase, DUSP domain	SMART	SM00695	dusp	coord: 34..149 e-value: 7.1E-20 score: 82.0
IPR006615	Peptidase C19, ubiquitin-specific peptidase, DUSP domain	PFAM	PF06337	DUSP	coord: 38..134 e-value: 1.9E-16 score: 60.5
IPR006615	Peptidase C19, ubiquitin-specific peptidase, DUSP domain	PROSITE	PS51283	DUSP	coord: 15..150 score: 14.740496
None	No IPR available	GENE3D	3.30.2230.10		coord: 5..140 e-value: 2.0E-23 score: 84.3
None	No IPR available	PANTHER	PTHR21646:SF18	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 5	coord: 13..133
None	No IPR available	PANTHER	PTHR21646	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	coord: 13..133
IPR035927	DUSP-like superfamily	SUPERFAMILY	143791	DUSP-like	coord: 16..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12306-RA	Carg12306-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016579	protein deubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
molecular_function	GO:0004843	thiol-dependent deubiquitinase