Carg12225 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg12225
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr11: 2789728 .. 2791516 (-)
RNA-Seq ExpressionCarg12225
SyntenyCarg12225
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGTTCAAGCTCTGGGCGTCCAACCTCTACGTTGCATGGCACGGGCGAAAGGAGTTTTATAAGATGAATAATTCATCTGGTCTGCACGTGACGTGTGGATATTCCGACATATCGACTTGGAGAAGCTTTGGTTTGCTATTACTACTTAGGGAAGGCCCGATGGGCCTGGAGCTTTGCGTATAATGGGCCTATCCTAGTATCGCGGCCCATTTAATGCTTATACTAAAATTGAATTATTTTAACATTTTTTTTCCTTTGTCCAATAGTGTCAATATATAATAAAAATATAGTTAAATTGCGTAATTTGGAACTTGATCAAAGTTTAGATTGGATGCATATATGTACTAAAAAATGATTTAATGTATAGATTTCACAATTATGAAGATATATTAAGTATAACATAATTTTTTTTTTTTTGAAAATAATGTATTTCTTCTAACCAAATTAAAAAAAATATCGTTCATTTTAAACATAAACTCTGGGGACTTTGTTCGGGCTTTCATCCAACAATTAATGAATTTTAAATTTTGGTCCCGTTGAAAAAAAAGAAAGAAAGAGAAAAATAATTCGTAGACCGATCTGGTCTAAGTTGCAGATTCGATCGCCCAAACACCGCGAGTTGCTCCGAAAGCAGGGCCGATAAATCGGCGATTTGATCCGAAGAGGAGTTTTGAGCAAATCAACAATTCGTTCCAGTGAGGAACAAAGATCATGATTCTGATAGAAATATTCATTGTGCCAAATTAGTAGAGATGCATTTCTACTGTGGATTTCTCTCATCCCGCCACGCTGTGCCATAATCCAGGTTTTTGAGTTCATACTTGGTCTTCCTTGACAGGATCACTTGACTTAGGGTTATGTTTCTCTGTTTCAAAGAACTGTTCCCCTGCCCTAACTTGGATTCATTTCCTTTCTGGTAATTTATTCCATTTACTTTTGGCGAGTTGGCCTACTCTGAAATTTTTTCTTTTCTTATGTCTTAAGTATTCTGGATCATCACGGATTTTACAGTGATTGAGGTGTATGTGAAGAGAATGAGTTGAGATGGGGTTTTGGTTCTATATAATGGGTGCTTTTGATTGTTGGTCTATTGTTTGTAAGCTACCTAGTTTTCTTTTTCTTTTTTTTAATATATTTTTTTAAAACATCTAAGCATGTTTGCAAGATTTGGTGATCGCGTGATCTGAATTGCCATCTAAATGTATGCCAGAAATTAACCGTATGGAATGTTACTTTATTCCCAGACCGAATATGTTTATTTCGATCCTGTATGCATTTGGATTGTTTTAGGTAATCTTACAGCAAGTTCCATCATAATTTACATGTTATGTTTTTGTGTGGGTCAGTTTTGATTGGGATAAGGAAAACTATGTTTTTAAATTTGAGAGTGGATTGAATATCCAGCGACTTTTGTTTAAGGCAACAAAGAATCAGATGTTTCTGACATTTTGGAAATGCCACCGTGAGTTTTGTGTTAAAAAGATTTCCTGATTTGGCAACAGTCTATGTTAGGACAAAGTATCAATGTAATTGGCTTGTTTGTAAAATGTAGTAGATTTCTTCTTTTTGTTTATTATGGAACCTGAGGATTTACCTGCAATGATTCAATCTGGATCTTGCAATCTGCTGCATCTTTTGGCATTTTACAGCACTCAATGTATGTTTCATCGATGGGCAAGGTTTAAATATCATGATATGTTTATCAAATTTGATATTACTCTTACACTCGAGGTTCTTTTTATATATCAGCCTGAGTCAAGAATTGATGGATGATCGTGAATCGTGA

mRNA sequence

ATGACGTTCAAGCTCTGGGCGTCCAACCTCTACGTTGCATGGCACGGGCGAAAGGAGTTTTATAAGATGAATAATTCATCTGGTCTGCACGTGACGTGTGGATATTCCGACATATCGACTTGGAGAAGCTTTGATTCGATCGCCCAAACACCGCGAGTTGCTCCGAAAGCAGGGCCGATAAATCGGCGATTTGATCCGAAGAGGAGTTTTGAGCAAATCAACAATTCGTTCCACCTGAGTCAAGAATTGATGGATGATCGTGAATCGTGA

Coding sequence (CDS)

ATGACGTTCAAGCTCTGGGCGTCCAACCTCTACGTTGCATGGCACGGGCGAAAGGAGTTTTATAAGATGAATAATTCATCTGGTCTGCACGTGACGTGTGGATATTCCGACATATCGACTTGGAGAAGCTTTGATTCGATCGCCCAAACACCGCGAGTTGCTCCGAAAGCAGGGCCGATAAATCGGCGATTTGATCCGAAGAGGAGTTTTGAGCAAATCAACAATTCGTTCCACCTGAGTCAAGAATTGATGGATGATCGTGAATCGTGA

Protein sequence

MTFKLWASNLYVAWHGRKEFYKMNNSSGLHVTCGYSDISTWRSFDSIAQTPRVAPKAGPINRRFDPKRSFEQINNSFHLSQELMDDRES
Homology
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BLAST of Carg12225 vs. NCBI nr
Match: KAG7021878.1 (hypothetical protein SDJN02_15606, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 189.5 bits (480), Expect = 1.2e-44
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0 

Query: 1  MTFKLWASNLYVAWHGRKEFYKMNNSSGLHVTCGYSDISTWRSFDSIAQTPRVAPKAGPI 60
          MTFKLWASNLYVAWHGRKEFYKMNNSSGLHVTCGYSDISTWRSFDSIAQTPRVAPKAGPI
Sbjct: 1  MTFKLWASNLYVAWHGRKEFYKMNNSSGLHVTCGYSDISTWRSFDSIAQTPRVAPKAGPI 60

Query: 61 NRRFDPKRSFEQINNSFHLSQELMDDRES 90
          NRRFDPKRSFEQINNSFHLSQELMDDRES
Sbjct: 61 NRRFDPKRSFEQINNSFHLSQELMDDRES 89

The following BLAST results are available for this feature:
BLAST of Carg12225 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7021878.11.2e-44100.00hypothetical protein SDJN02_15606, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg12225 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg12225 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg12225 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg12225-RACarg12225-RAmRNA