Carg12115 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg12115
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr11: 2291935 .. 2293656 (-)
RNA-Seq ExpressionCarg12115
SyntenyCarg12115
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGGACCTGGCCATGTTTTTCCACAGCTTTCTTGAACTTCCTCTTTATTTTCTTCTAATTCTGAAGATTTTAATCAATTTTGAAGCTCAAGAAAGCTGTGGGACATCATGGCATTTCAGGCTTCTTGTAATTTCTTCTTCTTTCTCTCTTACAACGCTTGCCCAGGTAAATTTTTACCATGTAATTTCGCTTCCTGCTTCTTTAATTTTCATTTTCTGCATGTTTTTTTTCTTTTTTTTAATAAATTATGATGTTTTAATTAGGGTACTGCTACACGTTTGAAGCATGCATGGGGAGAGGGCTTTAATTAATTAATTATTATTATTTATTTTTTTAAAAAAAGGAATTATTATTTGAAGTGGAGTTGTGTAGTGTTGAGAATTGAGATTCATTCAATCAGAATTCAAAACATGGTGAAAAGGGAATTACTGTGTGCAGAGAAGATTCCCCAACTTTTCCTTTTTATCTTCAATCATCATACTTACTCATCTTACACTCCCTCTCTCTCCTCCCCCACTATTTTTTACCTCTTTTACTTTGCCCCCCTCATATTCTCCTACATTTCTGTGAAAAATGCCTCTAACCTTGTCACTATCTCACCCCCCTTCCTTTTTTTTCTTTTTACCCTCCTATCATTTCCCTCTACAATTCAACCATGAAATGGGTAATTTCGGAGAATGCAAATATACCCCATTTTCATATCCTTGTTCAACACAATTGAGCTCGACCAACTGGTCCGGTTGGATTCGGGTCGGTTCGAGGGTGAAGGAATTGGCTTAAAAGTGGTGGCATTTGAATAAGGCAGTAACCCAGCGCTGGCGCAGGAGGAGAATTGTAAATTTATACACTTTGTTTGGGAAATATTTTTCTTGGAATTTGGTATTTTTGTACTCCCACATCAAGTACATATACGGTCTTGGTTTCTAGTTATTCCTTTGGTTTTAAAATTTAGAAATAAAAGTAATATTGTGGGATTCATATTTTCGCCAATTATATTAATATATTATTATATTATATTTTGTTGATTGGACAATTGAGTTGGGTCTGTTCTTCATTCTCTTTCTTCTTCTCCACAGTTGAGTGTTCTTGCAAATTTTGGAACACATCAGAAACAACGAAGATTTTGTTTCAGATCTTAAAGAGAATATGGTTGAATGGTTTCTCTCTGTTTGGCTGCTGGGAAATCATCATAGAAAATGTGGGTTGGCCGAGAAAATTGGAAAGAATTGTCGTTGACAGAGTGAACTGGGGCAGCCAGTGATGGTCCTCCAATAAATTGGGTTAAATATTCTGTTATTCACTTGTAATAATGCTATTGAGTAAGGACTGAATTGAAATTTTTACAATGTTGAGGACATAATTGAAATAATCATACTTAACGAAAAGTATAAATTTATTTTATTCTCGTAACTGAAAAAAAATGGGATTGTGCATGAACATCGAGGAATTTTGTGATTAAAAAACCATAATTTGGTTGGCTAGTCTCAATTTTGGAAATTATAATCTCACAAAGCACAAGAAATCTTCACCCTTTTCCCAACACCAAAACCATATTGAGACAAACAAATAATCCAAACCCTGTTTCTGATTTGGATCATAAAATCAGACAAAAATAGTCCCTTTTTCCCAACATAACCATGTTTAAAAGCAACCAACATTGCCACTAAATTCATAAATTATTAAACTAATTAATTTTAAAACACTCTTTATGCTAAATA

mRNA sequence

ATGGGAGGACCTGGCCATATTTTAATCAATTTTGAAGCTCAAGAAAGCTGTGGGACATCATGGCATTTCAGGCTTCTTGTAATTTCTTCTTCTTTCTCTCTTACAACGCTTGCCCAGTTGAGTGTTCTTGCAAATTTTGGAACACATCAGAAACAACGAAGATTTTGTTTCAGATCTTAAAGAGAATATGGTTGAATGGTTTCTCTCTGTTTGGCTGCTGGGAAATCATCATAGAAAATGTGGGTTGGCCGAGAAAATTGGAAAGAATTGTCGTTGACAGAGTGAACTGGGGCAGCCAGTGATGGTCCTCCAATAAATTGGGTTAAATATTCTGTTATTCACTTGTAATAATGCTATTGAGTAAGGACTGAATTGAAATTTTTACAATGTTGAGGACATAATTGAAATAATCATACTTAACGAAAAGTATAAATTTATTTTATTCTCGTAACTGAAAAAAAATGGGATTGTGCATGAACATCGAGGAATTTTGTGATTAAAAAACCATAATTTGGTTGGCTAGTCTCAATTTTGGAAATTATAATCTCACAAAGCACAAGAAATCTTCACCCTTTTCCCAACACCAAAACCATATTGAGACAAACAAATAATCCAAACCCTGTTTCTGATTTGGATCATAAAATCAGACAAAAATAGTCCCTTTTTCCCAACATAACCATGTTTAAAAGCAACCAACATTGCCACTAAATTCATAAATTATTAAACTAATTAATTTTAAAACACTCTTTATGCTAAATA

Coding sequence (CDS)

ATGGGAGGACCTGGCCATATTTTAATCAATTTTGAAGCTCAAGAAAGCTGTGGGACATCATGGCATTTCAGGCTTCTTGTAATTTCTTCTTCTTTCTCTCTTACAACGCTTGCCCAGTTGAGTGTTCTTGCAAATTTTGGAACACATCAGAAACAACGAAGATTTTGTTTCAGATCTTAA

Protein sequence

MGGPGHILINFEAQESCGTSWHFRLLVISSSFSLTTLAQLSVLANFGTHQKQRRFCFRS
Homology
[Close]
BLAST of Carg12115 vs. NCBI nr
Match: KAG7021770.1 (hypothetical protein SDJN02_15497, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 123.6 bits (309), Expect = 5.6e-25
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0 

Query: 1  MGGPGHILINFEAQESCGTSWHFRLLVISSSFSLTTLAQLSVLANFGTHQKQRRFCFRS 60
          MGGPGHILINFEAQESCGTSWHFRLLVISSSFSLTTLAQLSVLANFGTHQKQRRFCFRS
Sbjct: 1  MGGPGHILINFEAQESCGTSWHFRLLVISSSFSLTTLAQLSVLANFGTHQKQRRFCFRS 59

The following BLAST results are available for this feature:
BLAST of Carg12115 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7021770.15.6e-25100.00hypothetical protein SDJN02_15497, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg12115 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg12115 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg12115 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg12115-RACarg12115-RAmRNA