Carg12082 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg12082
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionTLDc domain-containing protein
LocationCarg_Chr05: 9764336 .. 9765903 (-)
RNA-Seq ExpressionCarg12082
SyntenyCarg12082
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCAGAAAGGATTTTGGGATAAGGTACCGTTTTCGTCTTCTAAACCCCACTTTCTGATGCAAATGATTACGAATCAATGGCTTCCTGTATTTTCAACAATGTATTTTGCAGGTTGAAGACGACCCCCAGCTGTTCATTTGGCTGGAATTGGAATTTCGGCAATGCCAACAACAAAGACAACAAACCCCAAATCAAATACCACGATATCGATCTTCCATTTCCTCTCTCGCTCGTCGATAATACATTCTTGAAACGTATTTTTCTTTCCACTCTTGAAATCCCTGTGTTTGACTGTTCTTTAATGCCTTTTTGCTTTCAAATCGTAACAATATAGTCCTTAGTATGTAACAATAGTCTCGTCGTGTAAGATTTGTAAGAATTTAGTCTCTTCGATGAAAATCGTCACCAAAATGGTGATGTTTTTAGTCTTCTTGGTTTATAAACACACATAATCAGTTGTCGGTTAATTGAATGCCATTTTTTTCCTCCTTCCATTGTTGGAATCTTTGTTTTGAGTGTTCTTGAATGTTCCTTACTTAGTCTTTGTTTCTAATTTTTGTTTCCCTCTGGCTTAATGTGCTCAGAAATGGTGCTTCTATGTTTGTTTGTTCCATGAAGGTTTATGTGCTGGGTGTGTGGGAAATCTCTGATTCAAGTTGCAGAATAACTTAAACGTTTCTTAGGAAGAAAAACTCAATGAGCTGATGATTTTTTTACTCTCCCCCTGCTTGATCATATACTATAAAAAAATCTTACATCTGAATTATGCACTATAAAAACATATGGTTCATCTTGTAGAAACTTGTTACATTGTTCTTCAGATGCATTTTCAGGTGCATTTGCCTTGAATCATAATGTTCGTATTACGTTGTAGTGTTGTGAGATCCCACATCGGTTGGTGAGAGAACGAAACACCCCTGTGGAAACCTCTCCCTAACAAACATGTTTTAAAATTTTTAAGGGAAAGTCTAAAGAGGACAACATTTGCTAGTGGTACACCAACATAGACCCATAGTTGAATTGTCAAAATATTTTTGCAGGTAAGGAACTGAAATGCTGCTATAAGGCCACGTCAGACGGATTCAGCGCCACTGATTTCCACACGTGTTGTGATTTCAAAGGGCCATGTGTCATAATTGGGTACACAGACAAATCCTTCAAGTTTGGTGCATTCAACCCAGAAGGCTACAGAAGCACAGATGACTACTATGACACTTTTGATGCATTCCTCTTCTATTGGGAACACAATGAGACGGCTGATGATCCCATCATCTTGCCTAAGGTAGGGGGTAGCGGTGCAGCTTTGTTTGATTACGCGAGGGGCGGGCCACAGTTCGGGGCGGACGGGCTGCTGATCGGCCCCCCTCTAGCACCTGTGATGGGCGGCTTTGCAGGGCCAGACACGAACTCAGGCATTGGGGACTTAAGGCAAGCCAAGTCTCGGCTCGGGCTGTCGTATGCCAAGAGAAAAGATGGGAAGGACTCCATTTTTGGAGATGCAAACAGAGCTGTTGTTGCTGAAGTACAGGTCTTTTGCAGCCCTCAAATAGCAAGCTTGTATTGA

mRNA sequence

ATGCCTCAGAAAGGATTTTGGGATAAGGTACCGTTTTCGTCTTCTAAACCCCACTTTCTGATGCAAATGATTACGAATCAATGGCTTCCTGTATTTTCAACAATGTTGAAGACGACCCCCAGCTGTTCATTTGGCTGGAATTGGAATTTCGGCAATGCCAACAACAAAGACAACAAACCCCAAATCAAATACCACGATATCGATCTTCCATTTCCTCTCTCGCTCGTCGATAATACATTCTTGAAACGGCCATGTGTCATAATTGGGTACACAGACAAATCCTTCAAGTTTGGTGCATTCAACCCAGAAGGCTACAGAAGCACAGATGACTACTATGACACTTTTGATGCATTCCTCTTCTATTGGGAACACAATGAGACGGCTGATGATCCCATCATCTTGCCTAAGGTAGGGGGTAGCGGTGCAGCTTTGTTTGATTACGCGAGGGGCGGGCCACAGTTCGGGGCGGACGGGCTGCTGATCGGCCCCCCTCTAGCACCTGTGATGGGCGGCTTTGCAGGGCCAGACACGAACTCAGGCATTGGGGACTTAAGGCAAGCCAAGTCTCGGCTCGGGCTGTCGTATGCCAAGAGAAAAGATGGGAAGGACTCCATTTTTGGAGATGCAAACAGAGCTGTTGTTGCTGAAGTACAGGTCTTTTGCAGCCCTCAAATAGCAAGCTTGTATTGA

Coding sequence (CDS)

ATGCCTCAGAAAGGATTTTGGGATAAGGTACCGTTTTCGTCTTCTAAACCCCACTTTCTGATGCAAATGATTACGAATCAATGGCTTCCTGTATTTTCAACAATGTTGAAGACGACCCCCAGCTGTTCATTTGGCTGGAATTGGAATTTCGGCAATGCCAACAACAAAGACAACAAACCCCAAATCAAATACCACGATATCGATCTTCCATTTCCTCTCTCGCTCGTCGATAATACATTCTTGAAACGGCCATGTGTCATAATTGGGTACACAGACAAATCCTTCAAGTTTGGTGCATTCAACCCAGAAGGCTACAGAAGCACAGATGACTACTATGACACTTTTGATGCATTCCTCTTCTATTGGGAACACAATGAGACGGCTGATGATCCCATCATCTTGCCTAAGGTAGGGGGTAGCGGTGCAGCTTTGTTTGATTACGCGAGGGGCGGGCCACAGTTCGGGGCGGACGGGCTGCTGATCGGCCCCCCTCTAGCACCTGTGATGGGCGGCTTTGCAGGGCCAGACACGAACTCAGGCATTGGGGACTTAAGGCAAGCCAAGTCTCGGCTCGGGCTGTCGTATGCCAAGAGAAAAGATGGGAAGGACTCCATTTTTGGAGATGCAAACAGAGCTGTTGTTGCTGAAGTACAGGTCTTTTGCAGCCCTCAAATAGCAAGCTTGTATTGA

Protein sequence

MPQKGFWDKVPFSSSKPHFLMQMITNQWLPVFSTMLKTTPSCSFGWNWNFGNANNKDNKPQIKYHDIDLPFPLSLVDNTFLKRPCVIIGYTDKSFKFGAFNPEGYRSTDDYYDTFDAFLFYWEHNETADDPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDLRQAKSRLGLSYAKRKDGKDSIFGDANRAVVAEVQVFCSPQIASLY
Homology
[Close]
BLAST of Carg12082 vs. NCBI nr
Match: KAG7030199.1 (hypothetical protein SDJN02_08546, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 486.9 bits (1252), Expect = 9.7e-134
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 0 

Query: 1   MPQKGFWDKVPFSSSKPHFLMQMITNQWLPVFSTMLKTTPSCSFGWNWNFGNANNKDNKP 60
           MPQKGFWDKVPFSSSKPHFLMQMITNQWLPVFSTMLKTTPSCSFGWNWNFGNANNKDNKP
Sbjct: 1   MPQKGFWDKVPFSSSKPHFLMQMITNQWLPVFSTMLKTTPSCSFGWNWNFGNANNKDNKP 60

Query: 61  QIKYHDIDLPFPLSLVDNTFLKRPCVIIGYTDKSFKFGAFNPEGYRSTDDYYDTFDAFLF 120
           QIKYHDIDLPFPLSLVDNTFLKRPCVIIGYTDKSFKFGAFNPEGYRSTDDYYDTFDAFLF
Sbjct: 61  QIKYHDIDLPFPLSLVDNTFLKRPCVIIGYTDKSFKFGAFNPEGYRSTDDYYDTFDAFLF 120

Query: 121 YWEHNETADDPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSG 180
           YWEHNETADDPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSG
Sbjct: 121 YWEHNETADDPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSG 180

Query: 181 IGDLRQAKSRLGLSYAKRKDGKDSIFGDANRAVVAEVQVFCSPQIASLY 230
           IGDLRQAKSRLGLSYAKRKDGKDSIFGDANRAVVAEVQVFCSPQIASLY
Sbjct: 181 IGDLRQAKSRLGLSYAKRKDGKDSIFGDANRAVVAEVQVFCSPQIASLY 229

[Close]
BLAST of Carg12082 vs. NCBI nr
Match: XP_023005957.1 (uncharacterized protein LOC111498814 [Cucurbita maxima])

HSP 1 Score: 398.3 bits (1022), Expect = 4.5e-107
Identity = 195/225 (86.67%), Postives = 195/225 (86.67%), Query Frame = 0 

Query: 32  FSTMLKTTPSCSFGWNWNFGNANNKDNKPQIKYHDIDLPFPLSLVDNTFLKR-------- 91
           F   LKTTPSCSFGWNWNFGNANNKDNKPQIKYHDIDLPFPLSLVDNTFLKR        
Sbjct: 37  FGIRLKTTPSCSFGWNWNFGNANNKDNKPQIKYHDIDLPFPLSLVDNTFLKRKELKCCYK 96

Query: 92  -------------------PCVIIGYTDKSFKFGAFNPEGYRSTDDYYDTFDAFLFYWEH 151
                              PCVIIGYTDKSFKFGAFNPEGYRSTDDYYDTFDAFLFYWEH
Sbjct: 97  ATSDGFSATDFHTCCDFKGPCVIIGYTDKSFKFGAFNPEGYRSTDDYYDTFDAFLFYWEH 156

Query: 152 NETADDPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDL 211
           NETADDPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDL
Sbjct: 157 NETADDPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDL 216

Query: 212 RQAKSRLGLSYAKRKDGKDSIFGDANRAVVAEVQVFCSPQIASLY 230
           RQAKSRLGLSYAKRKDGKDSIFGDANRAVVAEVQVFCSPQIASLY
Sbjct: 217 RQAKSRLGLSYAKRKDGKDSIFGDANRAVVAEVQVFCSPQIASLY 261

[Close]
BLAST of Carg12082 vs. NCBI nr
Match: KAG6596922.1 (MND1-interacting protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 398.3 bits (1022), Expect = 4.5e-107
Identity = 195/225 (86.67%), Postives = 195/225 (86.67%), Query Frame = 0 

Query: 32  FSTMLKTTPSCSFGWNWNFGNANNKDNKPQIKYHDIDLPFPLSLVDNTFLKR-------- 91
           F   LKTTPSCSFGWNWNFGNANNKDNKPQIKYHDIDLPFPLSLVDNTFLKR        
Sbjct: 771 FGIRLKTTPSCSFGWNWNFGNANNKDNKPQIKYHDIDLPFPLSLVDNTFLKRKELKCCYK 830

Query: 92  -------------------PCVIIGYTDKSFKFGAFNPEGYRSTDDYYDTFDAFLFYWEH 151
                              PCVIIGYTDKSFKFGAFNPEGYRSTDDYYDTFDAFLFYWEH
Sbjct: 831 ATSDGFSATDFHTCCDFKGPCVIIGYTDKSFKFGAFNPEGYRSTDDYYDTFDAFLFYWEH 890

Query: 152 NETADDPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDL 211
           NETADDPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDL
Sbjct: 891 NETADDPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDL 950

Query: 212 RQAKSRLGLSYAKRKDGKDSIFGDANRAVVAEVQVFCSPQIASLY 230
           RQAKSRLGLSYAKRKDGKDSIFGDANRAVVAEVQVFCSPQIASLY
Sbjct: 951 RQAKSRLGLSYAKRKDGKDSIFGDANRAVVAEVQVFCSPQIASLY 995

[Close]
BLAST of Carg12082 vs. NCBI nr
Match: XP_022947044.1 (uncharacterized protein LOC111451012 [Cucurbita moschata])

HSP 1 Score: 396.7 bits (1018), Expect = 1.3e-106
Identity = 194/225 (86.22%), Postives = 195/225 (86.67%), Query Frame = 0 

Query: 32  FSTMLKTTPSCSFGWNWNFGNANNKDNKPQIKYHDIDLPFPLSLVDNTFLKR-------- 91
           F   LKTTPSCSFGWNWNFGNANNKDNKPQIKYHDIDLPFPLSLVDNTFLKR        
Sbjct: 48  FGIRLKTTPSCSFGWNWNFGNANNKDNKPQIKYHDIDLPFPLSLVDNTFLKRKELKCCYK 107

Query: 92  -------------------PCVIIGYTDKSFKFGAFNPEGYRSTDDYYDTFDAFLFYWEH 151
                              PCVIIGYTDKSFKFGAFNPEGYRSTDDYYDTFDAFLFYWEH
Sbjct: 108 ATSDGFSATDFHTCCDFKGPCVIIGYTDKSFKFGAFNPEGYRSTDDYYDTFDAFLFYWEH 167

Query: 152 NETADDPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDL 211
           NETADDPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDL
Sbjct: 168 NETADDPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDL 227

Query: 212 RQAKSRLGLSYAKRKDGKDSIFGDANRAVVAEVQVFCSPQIASLY 230
           RQAKSRLGLSYAKRKDGKDSIFGDANRAVVAEVQVFCSP+IASLY
Sbjct: 228 RQAKSRLGLSYAKRKDGKDSIFGDANRAVVAEVQVFCSPRIASLY 272

[Close]
BLAST of Carg12082 vs. NCBI nr
Match: XP_023520894.1 (uncharacterized protein LOC111784413 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 396.4 bits (1017), Expect = 1.7e-106
Identity = 194/225 (86.22%), Postives = 194/225 (86.22%), Query Frame = 0 

Query: 32  FSTMLKTTPSCSFGWNWNFGNANNKDNKPQIKYHDIDLPFPLSLVDNTFLKR-------- 91
           F   LKTTPSCSFGWNWNFGN NNKDNKPQIKYHDIDLPFPLSLVDNTFLKR        
Sbjct: 38  FGIRLKTTPSCSFGWNWNFGNPNNKDNKPQIKYHDIDLPFPLSLVDNTFLKRKELKCCYK 97

Query: 92  -------------------PCVIIGYTDKSFKFGAFNPEGYRSTDDYYDTFDAFLFYWEH 151
                              PCVIIGYTDKSFKFGAFNPEGYRSTDDYYDTFDAFLFYWEH
Sbjct: 98  ATSDGFSATDFHTCCDFKGPCVIIGYTDKSFKFGAFNPEGYRSTDDYYDTFDAFLFYWEH 157

Query: 152 NETADDPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDL 211
           NETADDPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDL
Sbjct: 158 NETADDPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDL 217

Query: 212 RQAKSRLGLSYAKRKDGKDSIFGDANRAVVAEVQVFCSPQIASLY 230
           RQAKSRLGLSYAKRKDGKDSIFGDANRAVVAEVQVFCSPQIASLY
Sbjct: 218 RQAKSRLGLSYAKRKDGKDSIFGDANRAVVAEVQVFCSPQIASLY 262

[Close]
BLAST of Carg12082 vs. ExPASy TrEMBL
Match: A0A6J1KUL2 (uncharacterized protein LOC111498814 OS=Cucurbita maxima OX=3661 GN=LOC111498814 PE=4 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 2.2e-107
Identity = 195/225 (86.67%), Postives = 195/225 (86.67%), Query Frame = 0 

Query: 32  FSTMLKTTPSCSFGWNWNFGNANNKDNKPQIKYHDIDLPFPLSLVDNTFLKR-------- 91
           F   LKTTPSCSFGWNWNFGNANNKDNKPQIKYHDIDLPFPLSLVDNTFLKR        
Sbjct: 37  FGIRLKTTPSCSFGWNWNFGNANNKDNKPQIKYHDIDLPFPLSLVDNTFLKRKELKCCYK 96

Query: 92  -------------------PCVIIGYTDKSFKFGAFNPEGYRSTDDYYDTFDAFLFYWEH 151
                              PCVIIGYTDKSFKFGAFNPEGYRSTDDYYDTFDAFLFYWEH
Sbjct: 97  ATSDGFSATDFHTCCDFKGPCVIIGYTDKSFKFGAFNPEGYRSTDDYYDTFDAFLFYWEH 156

Query: 152 NETADDPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDL 211
           NETADDPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDL
Sbjct: 157 NETADDPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDL 216

Query: 212 RQAKSRLGLSYAKRKDGKDSIFGDANRAVVAEVQVFCSPQIASLY 230
           RQAKSRLGLSYAKRKDGKDSIFGDANRAVVAEVQVFCSPQIASLY
Sbjct: 217 RQAKSRLGLSYAKRKDGKDSIFGDANRAVVAEVQVFCSPQIASLY 261

[Close]
BLAST of Carg12082 vs. ExPASy TrEMBL
Match: A0A6J1G5M9 (uncharacterized protein LOC111451012 OS=Cucurbita moschata OX=3662 GN=LOC111451012 PE=4 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 6.4e-107
Identity = 194/225 (86.22%), Postives = 195/225 (86.67%), Query Frame = 0 

Query: 32  FSTMLKTTPSCSFGWNWNFGNANNKDNKPQIKYHDIDLPFPLSLVDNTFLKR-------- 91
           F   LKTTPSCSFGWNWNFGNANNKDNKPQIKYHDIDLPFPLSLVDNTFLKR        
Sbjct: 48  FGIRLKTTPSCSFGWNWNFGNANNKDNKPQIKYHDIDLPFPLSLVDNTFLKRKELKCCYK 107

Query: 92  -------------------PCVIIGYTDKSFKFGAFNPEGYRSTDDYYDTFDAFLFYWEH 151
                              PCVIIGYTDKSFKFGAFNPEGYRSTDDYYDTFDAFLFYWEH
Sbjct: 108 ATSDGFSATDFHTCCDFKGPCVIIGYTDKSFKFGAFNPEGYRSTDDYYDTFDAFLFYWEH 167

Query: 152 NETADDPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDL 211
           NETADDPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDL
Sbjct: 168 NETADDPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDL 227

Query: 212 RQAKSRLGLSYAKRKDGKDSIFGDANRAVVAEVQVFCSPQIASLY 230
           RQAKSRLGLSYAKRKDGKDSIFGDANRAVVAEVQVFCSP+IASLY
Sbjct: 228 RQAKSRLGLSYAKRKDGKDSIFGDANRAVVAEVQVFCSPRIASLY 272

[Close]
BLAST of Carg12082 vs. ExPASy TrEMBL
Match: A0A0A0L1B1 (TLDc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G011810 PE=4 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 1.9e-95
Identity = 179/222 (80.63%), Postives = 185/222 (83.33%), Query Frame = 0 

Query: 36  LKTTPSCSFG-WNWNFGNANNKDNKPQIKYHDIDLPFPLSLVDNTFLKR----------- 95
           LKTTPSCSFG WNWNFGN N K +KPQIKYHDI LPFPLSL++ TFLKR           
Sbjct: 13  LKTTPSCSFGKWNWNFGNGNKKQDKPQIKYHDIVLPFPLSLLEKTFLKRKELKCCYKATS 72

Query: 96  ----------------PCVIIGYTDKSFKFGAFNPEGYRSTDDYYDTFDAFLFYWEHNET 155
                           PCVIIGYTDKSFKFGAFNPEGYRSTDDYYDTFDAFLFYW+ NE 
Sbjct: 73  DGFSATDFHACCDFKGPCVIIGYTDKSFKFGAFNPEGYRSTDDYYDTFDAFLFYWKDNED 132

Query: 156 ADDPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDLRQA 215
            DDPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSG+GDLRQA
Sbjct: 133 -DDPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGVGDLRQA 192

Query: 216 KSRLGLSYAKRKDGKDSIFGDANRAVVAEVQVFCSPQIASLY 230
           +SRLGLSYAKRKDGKDSIFGD NRAVVAEVQVFCSPQIASLY
Sbjct: 193 RSRLGLSYAKRKDGKDSIFGDENRAVVAEVQVFCSPQIASLY 233

[Close]
BLAST of Carg12082 vs. ExPASy TrEMBL
Match: A0A1S3BKB8 (uncharacterized protein LOC103490798 OS=Cucumis melo OX=3656 GN=LOC103490798 PE=4 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 4.3e-95
Identity = 176/222 (79.28%), Postives = 184/222 (82.88%), Query Frame = 0 

Query: 36  LKTTPSCSFG-WNWNFGNANNKDNKPQIKYHDIDLPFPLSLVDNTFLKR----------- 95
           LKTTPSCSFG WNWNFG+ N K +KPQIKYHDI LPFP+SL+D TFLKR           
Sbjct: 13  LKTTPSCSFGKWNWNFGDGNKKQDKPQIKYHDIVLPFPVSLLDKTFLKRKELKCCYKATS 72

Query: 96  ----------------PCVIIGYTDKSFKFGAFNPEGYRSTDDYYDTFDAFLFYWEHNET 155
                           PCVIIGYTDKSFKFGAFNPEGYRSTDDYYDTFDAFLFYW+ NE 
Sbjct: 73  DGFSATDFHACCDFKGPCVIIGYTDKSFKFGAFNPEGYRSTDDYYDTFDAFLFYWKDNED 132

Query: 156 ADDPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDLRQA 215
             DPI+LPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSG+GDLRQA
Sbjct: 133 NADPIVLPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGVGDLRQA 192

Query: 216 KSRLGLSYAKRKDGKDSIFGDANRAVVAEVQVFCSPQIASLY 230
           +SRLGLSYAKRKDGKDSIFGD NRAVVAEVQVFCSPQIASLY
Sbjct: 193 RSRLGLSYAKRKDGKDSIFGDENRAVVAEVQVFCSPQIASLY 234

[Close]
BLAST of Carg12082 vs. ExPASy TrEMBL
Match: A0A6J1CU04 (LOW QUALITY PROTEIN: uncharacterized protein LOC111014765 OS=Momordica charantia OX=3673 GN=LOC111014765 PE=4 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 4.9e-91
Identity = 170/221 (76.92%), Postives = 178/221 (80.54%), Query Frame = 0 

Query: 36  LKTTPSCSFGWNWNFGNANNKDNKPQIKYHDIDLPFPLSLVDNTFL-------------- 95
           LKT P+ SFGWNW+FGN + K++KP IKYH IDLPFP SLVD TFL              
Sbjct: 13  LKTIPTSSFGWNWSFGNGSKKEDKPNIKYHQIDLPFPPSLVDKTFLKGRELKCCYKATSD 72

Query: 96  -------------KRPCVIIGYTDKSFKFGAFNPEGYRSTDDYYDTFDAFLFYWEHNETA 155
                        K PCVIIGYTDKSFKFGAFNPEGYRSTDDYYDTFDAFLFYWE +  A
Sbjct: 73  GFSATDFHTCCDFKGPCVIIGYTDKSFKFGAFNPEGYRSTDDYYDTFDAFLFYWELDNEA 132

Query: 156 DDPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIGDLRQAK 215
            DPIILPKVGGSGAALFDYARGGPQFGADGLLI PPLAPVMGGFAGPDTNSG+GDLRQAK
Sbjct: 133 ADPIILPKVGGSGAALFDYARGGPQFGADGLLIXPPLAPVMGGFAGPDTNSGVGDLRQAK 192

Query: 216 SRLGLSYAKRKDGKDSIFGDANRAVVAEVQVFCSPQIASLY 230
           SRLGLSYAKRKDGK+SIFGD  RAVVAEVQVFCSPQIASLY
Sbjct: 193 SRLGLSYAKRKDGKESIFGDEGRAVVAEVQVFCSPQIASLY 233

[Close]
BLAST of Carg12082 vs. TAIR 10
Match: AT1G32520.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 143 Blast hits to 142 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 39; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink). )

HSP 1 Score: 273.1 bits (697), Expect = 2.0e-73
Identity = 145/227 (63.88%), Postives = 162/227 (71.37%), Query Frame = 0 

Query: 32  FSTMLKTTPSCS-FGWNWNFGNANNKDNKPQIKYHDIDLPFPLSLVDNTFL--------- 91
           F T+ + +P  S FGWN      N +  +    + D+++PF LS+V+ TFL         
Sbjct: 15  FKTLKRISPYNSLFGWNSGKKIDNIRPPQQPAYHDDVEIPFSLSMVNKTFLKGRELKCCY 74

Query: 92  ------------------KRPCVIIGYT-DKSFKFGAFNPEGYRSTDDYYDTFDAFLFYW 151
                             K PCVII YT DKSFKFG F+PEGYRSTDDYYDTFDAFLFYW
Sbjct: 75  KASIDGFGATKFHERCDFKGPCVIIAYTKDKSFKFGGFSPEGYRSTDDYYDTFDAFLFYW 134

Query: 152 EHNETADDPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIG 211
              E  DDPI+LPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIG
Sbjct: 135 --LEDCDDPIVLPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGIG 194

Query: 212 DLRQAKSRLGLSYAKRKDGKDSIFGDANRAVVAEVQVFCSPQIASLY 230
           DLR AKSRLGLSYAKRKDGK+SIFGD N+  + +V VFCSP IASLY
Sbjct: 195 DLRVAKSRLGLSYAKRKDGKESIFGDENKVSLDDVLVFCSPYIASLY 239

The following BLAST results are available for this feature:
BLAST of Carg12082 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7030199.19.7e-134100.00hypothetical protein SDJN02_08546, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_023005957.14.5e-10786.67uncharacterized protein LOC111498814 [Cucurbita maxima][more]
KAG6596922.14.5e-10786.67MND1-interacting protein 1, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022947044.11.3e-10686.22uncharacterized protein LOC111451012 [Cucurbita moschata][more]
XP_023520894.11.7e-10686.22uncharacterized protein LOC111784413 [Cucurbita pepo subsp. pepo][more]
BLAST of Carg12082 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg12082 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KUL22.2e-10786.67uncharacterized protein LOC111498814 OS=Cucurbita maxima OX=3661 GN=LOC111498814... [more]
A0A6J1G5M96.4e-10786.22uncharacterized protein LOC111451012 OS=Cucurbita moschata OX=3662 GN=LOC1114510... [more]
A0A0A0L1B11.9e-9580.63TLDc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G011810 PE=4 S... [more]
A0A1S3BKB84.3e-9579.28uncharacterized protein LOC103490798 OS=Cucumis melo OX=3656 GN=LOC103490798 PE=... [more]
A0A6J1CU044.9e-9176.92LOW QUALITY PROTEIN: uncharacterized protein LOC111014765 OS=Momordica charantia... [more]
BLAST of Carg12082 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G32520.12.0e-7363.88unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg12082-RACarg12082-RAmRNA