Carg12080 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg12080
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr05: 9760972 .. 9763337 (+)
RNA-Seq ExpressionCarg12080
SyntenyCarg12080
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATCTCAAGCAGCAAGCCAGCCTGAAGAAATTGGACGAACTCATGATATCGACGAAAAGGCTTCAAGTTGGATGCACGTTCCCAAAGGCGCAACTAGATGCCACAGTTTGGTTTGGAGGATGAACAACAGTCAATTGGAAAATTTAACTTCTTTCACCTTCTATTATCTATTGTTTCCTTCCCCTTTTAAACACCTCCAAGGAAGAAAGAATTTTTGCATAGGGATCAGGCACTTGCCATTCGTTTGTGCGTGCCTCTTTTTATCATTTTAGGCCAAAAAAGAAAGAAAGAAAAGAAAGGAATGTGGATGTAAATTGGTGGGGGTATAATTTTAGTTGCTGAAAAATTGAGCAGTCCCTTGTACGGTGGATTCCACCACTCCGGATTATAGAATTGAGCAGTCCCAAGTTTTCTCTGTGCCTAAATGGAAGGCCTGTGTTTCTCTCTGAATTATGTTCTTTTACATGCAATATGAACCCGCATATGCTTCTGAAAAACACATTACTTTTTGAATTAACTCATACATTCTAGTCCTGACAGGTGCCTGCTACTAACCCCATGGCTGATTAAGCTGTTGTGGCAGCCACAGATGGTTCACTTGAACGCACCCATGCAACTAAATCCTCCCTTGTGGCTACAAACCACCCAGCCCGGTCTTCTTGCATTTGAAATGGAGCAGCAAGTTTTTCTACATAAGAAGCAAATGAATTGGCTAGTCCTTGAGAAAACCTGTGAGTTCCTACACCGGTTTGAGCTGATAACAATTCTGGCAATGCTTCTTCTCGTTGAACGATCTTCGTTAGAGTTATCATCCATTCTTCGAGTGCAGTCTGAGCTGCGCCTACTGATAGCGATCGAACATCTAAGCACCATTCAGCATCGGTTTTGTTGTGTAACCCAGGGTACAATCCATACATACTTCCCAAGTAAAGCAACTCATGAGCTCTCTTGTGAAGATTTTGGTTTCGACATATATCAATTAGGCAATTGCAGAAAGGTCGTCGCGCTTCTGTCGCAGTGTTGCCGAGAATGTTCCTGAATTCGTCTTTGACAACTTCAAAGGTAATGTCGTTTTGTTGCAGAAGGTTTATGAAGGCAGCTAAGTTTGGGTTAGCTTGTTGCAGACAAGCGAATACCTTGTTAATGTCTTCACTATTGTCACACAAAGACACAACAGACAGCAAACAGCCACAAAGTCTGTCATCTGGCTTGATCCCTTTTTGTACCAAAACATCGAACACTCTTGCAAGATCATCAATTCTCCCAGCTTTCCCCAAGCACTGAATCAAACAAGTGCAGCCCATCACATTAACCTCAACTCTCAACTCCAGCATTTCTTCGAATAACTCCATGGCTCTTTCGACATTACCTCCGCTACCATATATATTCAACATCGCCGTGTAGCTCCAGCTATCTGGTCGACATTGCTCCGACCTCTTCATCTCTTCAAAGAGCTTCTCAGCTTCCTCCGCCAAACCAAGGTCAGCACACATACTCAACAATGTATTATACAAAATGAAGTCCATCGGCCACCCATTCGACCTCATCCGCTCCCATAAGTCTAAAGCATCTCGAGCCCACCTTGCCTTACCATAAATCTTAACCAATGCAGTCAACGTCTTCGCATTCGGCGTTATCCCCGATTCAATCATTTCGTTGAACAGGCTCCTTGCAAAACCAGGCTTCCCAGCCTTCCCCATTGCTTCCAACAGAGTGTTATACACCACAAGATTAGGCTGCACCTCTACTGACTTCATTTCTTGAAGAACATACATAATCCCATCATAATTCCCTGCTTCCCCAAACATCTTCCCCAACAAAGAGAATGTGACAGTGTCAGGCTTCCAACCACTAGCCCTCCCTCTTTCATACAAACTAAGAACCTCCTCAACTTTGCCTAAATTAGCATAAACATCTAAAATAGCAGAGTAAGTCACCTCATCAGGCATCAAACCAGTTTTATACATTCTCTCAAACCACTCCATAGCCTTATCAAATCTACTACACTTTTTAGCAGAAGTGATTATGGTAGAATAAGTAATGTTATCAAGCTCAATCCCACTACTAATCATCTCATTAGCAAGATCTTCGATAAGCTGAAACTGCCTACCGTACCTCAAAGACTTCATAGCCACATTGTAGAAGATAGTCTCCATAGGAAACAGATTCTGGGTCTTGATCCAATTGAAGAACAGATGAGTTTTCTGCCATGGCTTCAAGCTATTGAGAATCAGAAGGGCATTTTCTTTAGTGGGTGGATGTGGGATTTCCTCAAGAGCCGCCATGAAAGCACTTTCAGAGGATTCACAGGCGTTGAGCTTGTGGGCAAAGGTTTTAAGGTCTCGGCGTTTGGGGTTATATGA

mRNA sequence

ATGCATCTCAAGCAGCAAGCCAGCCTGAAGAAATTGGACGAACTCATGATATCGACGAAAAGGCTTCAAGTTGGATGCACGTTCCCAAAGGCGCAACTAGATGCCACAGTTTGGTGCCTGCTACTAACCCCATGGCTGATTAAGCTGTTGTGGCAGCCACAGATGGTTCACTTGAACGCACCCATGCAACTAAATCCTCCCTTGTGGCTACAAACCACCCAGCCCGGTCTTCTTGCATTTGAAATGGAGCAGCAAGCAATTGCAGAAAGGTCGTCGCGCTTCTGTCGCAGTGTTGCCGAGAATGTTCCTGAATTCGTCTTTGACAACTTCAAAGGTAATGTCGTTTTGTTGCAGAAGCTCCAGCTATCTGGTCGACATTGCTCCGACCTCTTCATCTCTTCAAAGAGCTTCTCAGCTTCCTCCGCCAAACCAAGAAGTGATTATGGTAGAATAAGTAATGTTATCAAGCTCAATCCCACTACTAATCATCTCATTAGCAAGATCTTCGATAAGCTGAAACTGCCTACCGTACCTCAAAGACTTCATAGCCACATTGTAGAAGATAGTCTCCATAGGAAACAGATTCTGGGTCTTGATCCAATTGAAGAACAGATGAGTTTTCTGCCATGGCTTCAAGCTATTGAGAATCAGAAGGGCATTTTCTTTAGTGGGTGGATGTGGGATTTCCTCAAGAGCCGCCATGAAAGCACTTTCAGAGGATTCACAGGCGTTGAGCTTGTGGGCAAAGGTTTTAAGGTCTCGGCGTTTGGGGTTATATGA

Coding sequence (CDS)

ATGCATCTCAAGCAGCAAGCCAGCCTGAAGAAATTGGACGAACTCATGATATCGACGAAAAGGCTTCAAGTTGGATGCACGTTCCCAAAGGCGCAACTAGATGCCACAGTTTGGTGCCTGCTACTAACCCCATGGCTGATTAAGCTGTTGTGGCAGCCACAGATGGTTCACTTGAACGCACCCATGCAACTAAATCCTCCCTTGTGGCTACAAACCACCCAGCCCGGTCTTCTTGCATTTGAAATGGAGCAGCAAGCAATTGCAGAAAGGTCGTCGCGCTTCTGTCGCAGTGTTGCCGAGAATGTTCCTGAATTCGTCTTTGACAACTTCAAAGGTAATGTCGTTTTGTTGCAGAAGCTCCAGCTATCTGGTCGACATTGCTCCGACCTCTTCATCTCTTCAAAGAGCTTCTCAGCTTCCTCCGCCAAACCAAGAAGTGATTATGGTAGAATAAGTAATGTTATCAAGCTCAATCCCACTACTAATCATCTCATTAGCAAGATCTTCGATAAGCTGAAACTGCCTACCGTACCTCAAAGACTTCATAGCCACATTGTAGAAGATAGTCTCCATAGGAAACAGATTCTGGGTCTTGATCCAATTGAAGAACAGATGAGTTTTCTGCCATGGCTTCAAGCTATTGAGAATCAGAAGGGCATTTTCTTTAGTGGGTGGATGTGGGATTTCCTCAAGAGCCGCCATGAAAGCACTTTCAGAGGATTCACAGGCGTTGAGCTTGTGGGCAAAGGTTTTAAGGTCTCGGCGTTTGGGGTTATATGA

Protein sequence

MHLKQQASLKKLDELMISTKRLQVGCTFPKAQLDATVWCLLLTPWLIKLLWQPQMVHLNAPMQLNPPLWLQTTQPGLLAFEMEQQAIAERSSRFCRSVAENVPEFVFDNFKGNVVLLQKLQLSGRHCSDLFISSKSFSASSAKPRSDYGRISNVIKLNPTTNHLISKIFDKLKLPTVPQRLHSHIVEDSLHRKQILGLDPIEEQMSFLPWLQAIENQKGIFFSGWMWDFLKSRHESTFRGFTGVELVGKGFKVSAFGVI
Homology
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BLAST of Carg12080 vs. NCBI nr
Match: KAG7030197.1 (hypothetical protein SDJN02_08544, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 522.7 bits (1345), Expect = 1.8e-144
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 0 

Query: 1   MHLKQQASLKKLDELMISTKRLQVGCTFPKAQLDATVWCLLLTPWLIKLLWQPQMVHLNA 60
           MHLKQQASLKKLDELMISTKRLQVGCTFPKAQLDATVWCLLLTPWLIKLLWQPQMVHLNA
Sbjct: 1   MHLKQQASLKKLDELMISTKRLQVGCTFPKAQLDATVWCLLLTPWLIKLLWQPQMVHLNA 60

Query: 61  PMQLNPPLWLQTTQPGLLAFEMEQQAIAERSSRFCRSVAENVPEFVFDNFKGNVVLLQKL 120
           PMQLNPPLWLQTTQPGLLAFEMEQQAIAERSSRFCRSVAENVPEFVFDNFKGNVVLLQKL
Sbjct: 61  PMQLNPPLWLQTTQPGLLAFEMEQQAIAERSSRFCRSVAENVPEFVFDNFKGNVVLLQKL 120

Query: 121 QLSGRHCSDLFISSKSFSASSAKPRSDYGRISNVIKLNPTTNHLISKIFDKLKLPTVPQR 180
           QLSGRHCSDLFISSKSFSASSAKPRSDYGRISNVIKLNPTTNHLISKIFDKLKLPTVPQR
Sbjct: 121 QLSGRHCSDLFISSKSFSASSAKPRSDYGRISNVIKLNPTTNHLISKIFDKLKLPTVPQR 180

Query: 181 LHSHIVEDSLHRKQILGLDPIEEQMSFLPWLQAIENQKGIFFSGWMWDFLKSRHESTFRG 240
           LHSHIVEDSLHRKQILGLDPIEEQMSFLPWLQAIENQKGIFFSGWMWDFLKSRHESTFRG
Sbjct: 181 LHSHIVEDSLHRKQILGLDPIEEQMSFLPWLQAIENQKGIFFSGWMWDFLKSRHESTFRG 240

Query: 241 FTGVELVGKGFKVSAFGVI 260
           FTGVELVGKGFKVSAFGVI
Sbjct: 241 FTGVELVGKGFKVSAFGVI 259

The following BLAST results are available for this feature:
BLAST of Carg12080 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7030197.11.8e-144100.00hypothetical protein SDJN02_08544, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg12080 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg12080 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg12080 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg12080-RACarg12080-RAmRNA