Carg12046 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg12046
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr05: 9412543 .. 9414193 (+)
RNA-Seq ExpressionCarg12046
SyntenyCarg12046
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACTCAAGGTTTGTGTCCTGACATGGTGTGGTGATATTTGTGAAGTTTAGGCAAAGGTCTCAAGAGAGAACAAAGTGTTGGTGAGTGTGTATACAGAGAGGCAGGAACCAAGAGTAGCAGTAAATCGTGTCCAACGTGATGATGTGAACAAAACAGTGAGGAATCAGTGGAAGAAAGAAATAGCTAATAAAGGATACAATAGGAGAACTGAACTCCTTAAGTACTCTCAACGCCTGCGAAAATCTGCACAATCACCTGCATCTCCATATCTTCCAACTCCGGAGCCAATTTCTGTGACGAACAAGCAACCGATCCACAGAAACGTCGCGATTAATCCTGTATGTATGCTCTTCCGTTTCTGTAAGTTCATTATTTTTAGAATTCGAGAATTCCTGTTCAAGGAACGACGACCCTTCGTAGTGGCATAATACTGTCCACGTTGAGTATAAGCTCTCATGGTTTTACTTTTAGTTTTTTCAAAAGACCTCAAACCAATGAAGATAATATCCCTTACTTATATACCATGATATTTCCCTTTATTAGCTGATGTGAGACTCGAACAATCTTAACAAATTCCTAATAATCCTCCCCACGAACAAAGTACACCATTGAGCCTCACTTGATGACTCCTTTTTCTTTGGAGCCTTCGAACAAAGTACAACATTGAGTCTCCCCTTAAATAGTTTTCTATCTGTCCAACACTATTATAGACGACTCTTGTTCACTAGAGCACATTGTTAGTTCAATAAAACTCTACCATGAATCTTCACCATGACTGCACTTTCGAGACTAAACTTCTTTGTTTGACACTTGAGTCACTATGACTACACCTTCAAGATTCAGAGCTTCTTTGTTCGTGACATAACCAAGTTAGGGCATAGCTCTAATACCACTTATAGGAACAACTACCCTTCACAATGACATCATATTGTTCACTTTGAGCATAAACTCTCGTGAGTTTGTTTTTGGTTTTCCTAAAAGGTCCCATACAAATAGAGATAGTGTCGCTTAATTATATATCTACGATCTTCCCCTTAATTAGCCAATGCGAGACTCCAACCATCCCAACAATCCTCAATACACACAACAATAATCTAACCCACCTAGCGAGAAAGTATGATAATCAATTTGGTTTTCTTCAACAATAATGTATAACCCAACTAGTGCCGTACACCAAATTCATCTGAACAACTCAAATTTGAATAGATATTGCAATAATATTTGTTCAAGTGGTCAAGTTCTGGATGTGTGTGTATCTCCATGGTCATTCGACCATAATTTTAAGTCAGAAACTTGAAATAGTTACCAGTGTTGTAATACTGTAGAGGAGGAGATGATATCAAACCCAATCATTTCTCCTGTATATAACTTGTTTTGGAAGGATATAGCCTGGTATCTATATCATGTTTGTGACGAAGAATTAAAGTTTTCCTTTTTTGATAGCTCGTCAATCTTCGTGCAAAGCCCAAGGGTGCCAGATTTACCTCTTGCTTCGGCAACCTGATTCAAAGGTCTCGCAAGGCTTTGACGAGTTTTCAACCAAAAAACAAGAGACAAAATCAGAACCAAAGCAGCGGATCTACCAAGAATGCTAATGATAATAAAAGAATTAGAAGGATAAGACTATTGAAATTTACATGCACTTAG

mRNA sequence

ATGAAACTCAAGGCAAAGGTCTCAAGAGAGAACAAAGTGTTGGTGAGTGTGTATACAGAGAGGCAGGAACCAAGAGTAGCAGTAAATCGTGTCCAACGTGATGATGTGAACAAAACAGTGAGGAATCAGTGGAAGAAAGAAATAGCTAATAAAGGATACAATAGGAGAACTGAACTCCTTAAGTACTCTCAACGCCTGCGAAAATCTGCACAATCACCTGCATCTCCATATCTTCCAACTCCGGAGCCAATTTCTCTCGTCAATCTTCGTGCAAAGCCCAAGGGTGCCAGATTTACCTCTTGCTTCGGCAACCTGATTCAAAGGTCTCGCAAGGCTTTGACGAGTTTTCAACCAAAAAACAAGAGACAAAATCAGAACCAAAGCAGCGGATCTACCAAGAATGCTAATGATAATAAAAGAATTAGAAGGATAAGACTATTGAAATTTACATGCACTTAG

Coding sequence (CDS)

ATGAAACTCAAGGCAAAGGTCTCAAGAGAGAACAAAGTGTTGGTGAGTGTGTATACAGAGAGGCAGGAACCAAGAGTAGCAGTAAATCGTGTCCAACGTGATGATGTGAACAAAACAGTGAGGAATCAGTGGAAGAAAGAAATAGCTAATAAAGGATACAATAGGAGAACTGAACTCCTTAAGTACTCTCAACGCCTGCGAAAATCTGCACAATCACCTGCATCTCCATATCTTCCAACTCCGGAGCCAATTTCTCTCGTCAATCTTCGTGCAAAGCCCAAGGGTGCCAGATTTACCTCTTGCTTCGGCAACCTGATTCAAAGGTCTCGCAAGGCTTTGACGAGTTTTCAACCAAAAAACAAGAGACAAAATCAGAACCAAAGCAGCGGATCTACCAAGAATGCTAATGATAATAAAAGAATTAGAAGGATAAGACTATTGAAATTTACATGCACTTAG

Protein sequence

MKLKAKVSRENKVLVSVYTERQEPRVAVNRVQRDDVNKTVRNQWKKEIANKGYNRRTELLKYSQRLRKSAQSPASPYLPTPEPISLVNLRAKPKGARFTSCFGNLIQRSRKALTSFQPKNKRQNQNQSSGSTKNANDNKRIRRIRLLKFTCT
Homology
BLAST of Carg12046 vs. NCBI nr
Match: KAG7030163.1 (hypothetical protein SDJN02_08510, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 288.9 bits (738), Expect = 2.6e-74
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0

Query: 1   MKLKAKVSRENKVLVSVYTERQEPRVAVNRVQRDDVNKTVRNQWKKEIANKGYNRRTELL 60
           MKLKAKVSRENKVLVSVYTERQEPRVAVNRVQRDDVNKTVRNQWKKEIANKGYNRRTELL
Sbjct: 1   MKLKAKVSRENKVLVSVYTERQEPRVAVNRVQRDDVNKTVRNQWKKEIANKGYNRRTELL 60

Query: 61  KYSQRLRKSAQSPASPYLPTPEPISLVNLRAKPKGARFTSCFGNLIQRSRKALTSFQPKN 120
           KYSQRLRKSAQSPASPYLPTPEPISLVNLRAKPKGARFTSCFGNLIQRSRKALTSFQPKN
Sbjct: 61  KYSQRLRKSAQSPASPYLPTPEPISLVNLRAKPKGARFTSCFGNLIQRSRKALTSFQPKN 120

Query: 121 KRQNQNQSSGSTKNANDNKRIRRIRLLKFTCT 153
           KRQNQNQSSGSTKNANDNKRIRRIRLLKFTCT
Sbjct: 121 KRQNQNQSSGSTKNANDNKRIRRIRLLKFTCT 152

BLAST of Carg12046 vs. NCBI nr
Match: XP_011650375.1 (uncharacterized protein LOC105434777 isoform X2 [Cucumis sativus] >KAE8650041.1 hypothetical protein Csa_011805 [Cucumis sativus])

HSP 1 Score: 201.1 bits (510), Expect = 7.1e-48
Identity = 116/176 (65.91%), Postives = 127/176 (72.16%), Query Frame = 0

Query: 5   AKVSRENKVLVSVYTERQEPRVAVNRVQRDDVNKTVRNQWKKEIANKGYNRRTELLKYSQ 64
           A VS+ENKVLV+VY+E+QEPR+ VNR QRD+VNK VRNQWK++ ANKGYNRRTELLKYSQ
Sbjct: 2   ATVSKENKVLVTVYSEKQEPRLPVNRYQRDNVNKVVRNQWKQDTANKGYNRRTELLKYSQ 61

Query: 65  RLRKSAQSPASPYLPTPEPIS---------------LVNLRAKPKGARFTSCFGNLIQRS 124
           RLRKSA+SPASPY+ TPEPI                LVNL  KPKG RFTSCFGNLIQRS
Sbjct: 62  RLRKSARSPASPYIRTPEPIPLKNKQPIARSIAINLLVNLCGKPKGPRFTSCFGNLIQRS 121

Query: 125 RKALTSFQPKNKRQNQNQSSGSTKNANDNKRIR-------------RIRLLKFTCT 153
            KALTSFQPK  RQ QNQSSGSTK  N+ K                RIRLL FTCT
Sbjct: 122 YKALTSFQPKKDRQKQNQSSGSTKKVNEVKNSESKSKNTMDKVKGSRIRLLTFTCT 177

BLAST of Carg12046 vs. NCBI nr
Match: XP_011650374.1 (uncharacterized protein LOC105434777 isoform X1 [Cucumis sativus])

HSP 1 Score: 200.7 bits (509), Expect = 9.2e-48
Identity = 117/182 (64.29%), Postives = 128/182 (70.33%), Query Frame = 0

Query: 5   AKVSRENKVLVSVYTERQEPRVAVNRVQRDDVNKTVRNQWKKEIANKGYNRRTELLKYSQ 64
           A VS+ENKVLV+VY+E+QEPR+ VNR QRD+VNK VRNQWK++ ANKGYNRRTELLKYSQ
Sbjct: 2   ATVSKENKVLVTVYSEKQEPRLPVNRYQRDNVNKVVRNQWKQDTANKGYNRRTELLKYSQ 61

Query: 65  RLRKSAQSPASPYLPTPEPI---------------------SLVNLRAKPKGARFTSCFG 124
           RLRKSA+SPASPY+ TPEPI                     SLVNL  KPKG RFTSCFG
Sbjct: 62  RLRKSARSPASPYIRTPEPIPLKNKQPIARSIAINLVCTSFSLVNLCGKPKGPRFTSCFG 121

Query: 125 NLIQRSRKALTSFQPKNKRQNQNQSSGSTKNANDNKRIR-------------RIRLLKFT 153
           NLIQRS KALTSFQPK  RQ QNQSSGSTK  N+ K                RIRLL FT
Sbjct: 122 NLIQRSYKALTSFQPKKDRQKQNQSSGSTKKVNEVKNSESKSKNTMDKVKGSRIRLLTFT 181

BLAST of Carg12046 vs. NCBI nr
Match: XP_008448776.1 (PREDICTED: uncharacterized protein LOC103490841 isoform X2 [Cucumis melo])

HSP 1 Score: 200.3 bits (508), Expect = 1.2e-47
Identity = 116/176 (65.91%), Postives = 127/176 (72.16%), Query Frame = 0

Query: 5   AKVSRENKVLVSVYTERQEPRVAVNRVQRDDVNKTVRNQWKKEIANKGYNRRTELLKYSQ 64
           A VS+ENKVLV+VY+E+QEPR+ VNR QR +VNK VRNQWK++ ANKGYNRRTELLKYSQ
Sbjct: 2   ATVSKENKVLVTVYSEKQEPRLPVNRYQRANVNKVVRNQWKQDTANKGYNRRTELLKYSQ 61

Query: 65  RLRKSAQSPASPYLPTPEPIS---------------LVNLRAKPKGARFTSCFGNLIQRS 124
           RLRKSA+SPASPY+ TPEPI                LVNL  KPKG RFTSCFGNLIQRS
Sbjct: 62  RLRKSARSPASPYIRTPEPIPLKNKQPIARSIAINLLVNLCGKPKGPRFTSCFGNLIQRS 121

Query: 125 RKALTSFQPKNKRQNQNQSSGSTKNAN-------------DNKRIRRIRLLKFTCT 153
            KAL SFQPK  RQ QNQSSGSTKN N             D  + RRIRLL FTCT
Sbjct: 122 YKALASFQPKKDRQKQNQSSGSTKNVNEVKNSESKSKNTIDKVKGRRIRLLTFTCT 177

BLAST of Carg12046 vs. NCBI nr
Match: XP_008448775.1 (PREDICTED: uncharacterized protein LOC103490841 isoform X1 [Cucumis melo])

HSP 1 Score: 199.9 bits (507), Expect = 1.6e-47
Identity = 117/182 (64.29%), Postives = 128/182 (70.33%), Query Frame = 0

Query: 5   AKVSRENKVLVSVYTERQEPRVAVNRVQRDDVNKTVRNQWKKEIANKGYNRRTELLKYSQ 64
           A VS+ENKVLV+VY+E+QEPR+ VNR QR +VNK VRNQWK++ ANKGYNRRTELLKYSQ
Sbjct: 2   ATVSKENKVLVTVYSEKQEPRLPVNRYQRANVNKVVRNQWKQDTANKGYNRRTELLKYSQ 61

Query: 65  RLRKSAQSPASPYLPTPEPI---------------------SLVNLRAKPKGARFTSCFG 124
           RLRKSA+SPASPY+ TPEPI                     SLVNL  KPKG RFTSCFG
Sbjct: 62  RLRKSARSPASPYIRTPEPIPLKNKQPIARSIAINLVCTSFSLVNLCGKPKGPRFTSCFG 121

Query: 125 NLIQRSRKALTSFQPKNKRQNQNQSSGSTKNAN-------------DNKRIRRIRLLKFT 153
           NLIQRS KAL SFQPK  RQ QNQSSGSTKN N             D  + RRIRLL FT
Sbjct: 122 NLIQRSYKALASFQPKKDRQKQNQSSGSTKNVNEVKNSESKSKNTIDKVKGRRIRLLTFT 181

BLAST of Carg12046 vs. ExPASy TrEMBL
Match: A0A1S3BL45 (uncharacterized protein LOC103490841 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490841 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 5.8e-48
Identity = 116/176 (65.91%), Postives = 127/176 (72.16%), Query Frame = 0

Query: 5   AKVSRENKVLVSVYTERQEPRVAVNRVQRDDVNKTVRNQWKKEIANKGYNRRTELLKYSQ 64
           A VS+ENKVLV+VY+E+QEPR+ VNR QR +VNK VRNQWK++ ANKGYNRRTELLKYSQ
Sbjct: 2   ATVSKENKVLVTVYSEKQEPRLPVNRYQRANVNKVVRNQWKQDTANKGYNRRTELLKYSQ 61

Query: 65  RLRKSAQSPASPYLPTPEPIS---------------LVNLRAKPKGARFTSCFGNLIQRS 124
           RLRKSA+SPASPY+ TPEPI                LVNL  KPKG RFTSCFGNLIQRS
Sbjct: 62  RLRKSARSPASPYIRTPEPIPLKNKQPIARSIAINLLVNLCGKPKGPRFTSCFGNLIQRS 121

Query: 125 RKALTSFQPKNKRQNQNQSSGSTKNAN-------------DNKRIRRIRLLKFTCT 153
            KAL SFQPK  RQ QNQSSGSTKN N             D  + RRIRLL FTCT
Sbjct: 122 YKALASFQPKKDRQKQNQSSGSTKNVNEVKNSESKSKNTIDKVKGRRIRLLTFTCT 177

BLAST of Carg12046 vs. ExPASy TrEMBL
Match: A0A1S3BKH3 (uncharacterized protein LOC103490841 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490841 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 7.6e-48
Identity = 117/182 (64.29%), Postives = 128/182 (70.33%), Query Frame = 0

Query: 5   AKVSRENKVLVSVYTERQEPRVAVNRVQRDDVNKTVRNQWKKEIANKGYNRRTELLKYSQ 64
           A VS+ENKVLV+VY+E+QEPR+ VNR QR +VNK VRNQWK++ ANKGYNRRTELLKYSQ
Sbjct: 2   ATVSKENKVLVTVYSEKQEPRLPVNRYQRANVNKVVRNQWKQDTANKGYNRRTELLKYSQ 61

Query: 65  RLRKSAQSPASPYLPTPEPI---------------------SLVNLRAKPKGARFTSCFG 124
           RLRKSA+SPASPY+ TPEPI                     SLVNL  KPKG RFTSCFG
Sbjct: 62  RLRKSARSPASPYIRTPEPIPLKNKQPIARSIAINLVCTSFSLVNLCGKPKGPRFTSCFG 121

Query: 125 NLIQRSRKALTSFQPKNKRQNQNQSSGSTKNAN-------------DNKRIRRIRLLKFT 153
           NLIQRS KAL SFQPK  RQ QNQSSGSTKN N             D  + RRIRLL FT
Sbjct: 122 NLIQRSYKALASFQPKKDRQKQNQSSGSTKNVNEVKNSESKSKNTIDKVKGRRIRLLTFT 181

BLAST of Carg12046 vs. ExPASy TrEMBL
Match: A0A0A0L6R0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017150 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 5.5e-46
Identity = 108/156 (69.23%), Postives = 119/156 (76.28%), Query Frame = 0

Query: 5   AKVSRENKVLVSVYTERQEPRVAVNRVQRDDVNKTVRNQWKKEIANKGYNRRTELLKYSQ 64
           A VS+ENKVLV+VY+E+QEPR+ VNR QRD+VNK VRNQWK++ ANKGYNRRTELLKYSQ
Sbjct: 2   ATVSKENKVLVTVYSEKQEPRLPVNRYQRDNVNKVVRNQWKQDTANKGYNRRTELLKYSQ 61

Query: 65  RLRKSAQSPASPYLPTPEPI---------------------SLVNLRAKPKGARFTSCFG 124
           RLRKSA+SPASPY+ TPEPI                     SLVNL  KPKG RFTSCFG
Sbjct: 62  RLRKSARSPASPYIRTPEPIPLKNKQPIARSIAINLVCTSFSLVNLCGKPKGPRFTSCFG 121

Query: 125 NLIQRSRKALTSFQPKNKRQNQNQSSGSTKNANDNK 140
           NLIQRS KALTSFQPK  RQ QNQSSGSTK  N+ K
Sbjct: 122 NLIQRSYKALTSFQPKKDRQKQNQSSGSTKKVNEVK 157

BLAST of Carg12046 vs. ExPASy TrEMBL
Match: A0A5A7TG76 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00700 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 3.3e-27
Identity = 66/87 (75.86%), Postives = 78/87 (89.66%), Query Frame = 0

Query: 2   KLKAKVSRENKVLVSVYTERQEPRVAVNRVQRDDVNKTVRNQWKKEIANKGYNRRTELLK 61
           K++A VS+ENKVLV+VY+E+QEPR+ VNR QR +VNK VRNQWK++ ANKGYNRRTELLK
Sbjct: 269 KIEATVSKENKVLVTVYSEKQEPRLPVNRYQRANVNKVVRNQWKQDTANKGYNRRTELLK 328

Query: 62  YSQRLRKSAQSPASPYLPTPEPISLVN 89
           YSQRLRKSA+SPASPY+ TPEPI L N
Sbjct: 329 YSQRLRKSARSPASPYIRTPEPIPLKN 355

BLAST of Carg12046 vs. ExPASy TrEMBL
Match: A0A061GAZ6 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_015850 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.9e-06
Identity = 55/140 (39.29%), Postives = 80/140 (57.14%), Query Frame = 0

Query: 9   RENKVLVSVYTERQEPRVAVNRV---QRDDVNKTVRNQW-KKEIANKGYNRRTELLKYSQ 68
           ++  VLV+VY E+    V+ N     Q   ++ T++ +  K   A KGYNRR ELL YSQ
Sbjct: 27  KDMAVLVTVYAEKPRRSVSSNHQHHRQHHYLHHTIKQELIKHGGAGKGYNRRAELLHYSQ 86

Query: 69  RLRKSAQSPASPYLPTPEPIS---------LVNLRAKPKGARFTSCFGN---LIQRSRKA 128
           RLR+SA+S AS  L + +P+S         +V+++ KPK +R  +CF N   LI R  ++
Sbjct: 87  RLRESARSAASTALQS-KPVSSNDQQASNKIVSVQRKPKCSRTPACFDNWGILIPRFLRS 146

Query: 129 LTSFQPKNKRQNQNQSSGST 133
           LT+ Q K K   + Q  GST
Sbjct: 147 LTTLQAK-KTGKKKQHCGST 164

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7030163.12.6e-74100.00hypothetical protein SDJN02_08510, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_011650375.17.1e-4865.91uncharacterized protein LOC105434777 isoform X2 [Cucumis sativus] >KAE8650041.1 ... [more]
XP_011650374.19.2e-4864.29uncharacterized protein LOC105434777 isoform X1 [Cucumis sativus][more]
XP_008448776.11.2e-4765.91PREDICTED: uncharacterized protein LOC103490841 isoform X2 [Cucumis melo][more]
XP_008448775.11.6e-4764.29PREDICTED: uncharacterized protein LOC103490841 isoform X1 [Cucumis melo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3BL455.8e-4865.91uncharacterized protein LOC103490841 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S3BKH37.6e-4864.29uncharacterized protein LOC103490841 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A0A0L6R05.5e-4669.23Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017150 PE=4 SV=1[more]
A0A5A7TG763.3e-2775.86Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A061GAZ61.9e-0639.29Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_015850 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 112..139
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 112..135

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg12046-RACarg12046-RAmRNA