Carg11991 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg11991
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Trafficking protein particle complex subunit
Location	Carg_Chr05: 9040037 .. 9043935 (+)
RNA-Seq Expression	Carg11991
Synteny	Carg11991

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTAGTTTAATTATTAATTTAATGTTTTAAATGGGCCTCTCTTCCATCCAGTCTCAAGAGCTCCCGAAACTCCCCCCACTGGCTTATGATCGGCGATCATTGAAACAGGATTTTGCGCCTTTGAATCTACACTGACAATCGCTTTCATTCCATTTCTTTCCTAGGACTTTAGAAGTTTCAACCCGGAAAGATCTGAAGAGGATGGCAGCAATTTACAGCCTCTACATCATCAACAAATCTGGTGGCTTGATCTTCTACAAGGTAATCAACAAATGGAAACTACTCATTAATGCAATTAGAAACTAAATTTCTGGTAATTTCCATTTGGATTGCGAGTTTTGATGCTTAATTTGGTATCTGAATCGAAAAACAAATATGAACCCCAAATCATGATTCCAGTTTGTTTATCAGATTTTCAATCGACCTTTCTCTTACTTATGAATTATAAACCGGTTATGAGTGGAATTATTTTAATCTTCGAATTGAATCTCTAGTTGGCTTGTTTGAAAATTTAGGATTATGGATCTGCTGGACGAATGGACACAAACGATAGCTTGAGAGTGGCGAGTTTATGGCATTCGATGCATGCCATTTCCCAGCAGCTTTCGCCTATTTCTGGTTGTTCGGGTACTGAACTCCTTGAAGCCGACACATTCGATCTCCATTGCTTCCAGTCACTTACTGGTACATTTTTTCTTCCACTACTTTGTTTAATTTGTGCTTCAAACGCATGGATTCTGTCTCAAACTATGTTCCAAAGACACGCAATCAAAGACACGCAATCAAATTCGTAATGTGAAAGCACAATTGAAGTTCTAGGAACCTTATTGATCTTTTGTAAGATCCTATATCGGTTGGAGAGAGGAACGAAACACTCCTTATAAGGGTGTGGAAACCTCTCCCTATTAGACACATTTAAAACCTTGAGGGGAACCCCGAAAAGGAAAATCCAAAGAGGACAATATCTGCTAGCGGTGGGCTTGGACTGTTATCGGGTAATGTGCCAGCAAGGACGCTGGCTCCCAAGAAGGTGGATTGTGAGATCCTACATCGGTTAGAGAGGGGAACGAAGCATTCCTTCTAAGGGTGTGGAAACCTCTTTCTAGTAGACATGTTTTACAACCTTGAGGGGAAGTCTGAAAAGGAAAGTCTAAAGAAGACAATATTTGCTAGCAGTTGTTCAAATGATATCTGCTAGCCGTAGGAAACCTCTCTCTAGCGAGGACGTTTATCCCTATCAGGGGGTGGATTGTGAGATCCTACATCAGTTGGAGAGAGAAACGAAACATTTCTTATAAAGTTGTGGAAACCGTCCCTATAAGGGGGTGGATTGTGAGATCCTACATCAGTTGGAGAGAGGAACGAAACATTTCTTATAAAGTTGTGGAAACCTCTCCCCTAGTAGACGTGTTTTAAAACCTTGAGGGGAAGCCCAAAAGGGAAAACTTAAAAAGGACAATATTGGCTAGCAGTGGGCTTGGGCTGTTACATCTTTCTTGTCTTGAGTTCAACGGTATATGGGATTTCGAACACAACCGTTGTTGAGATTATAATGCCTTAACTTTCATGTTATATTCATTTTCTAGTTCTTAGTTATGAAGCTGAATCATGGATGAACTTGGCTGTTATAGGAACAAAGTTTTTTGTTGTGTGTGAGCCTGGGACACTGCACATGGAGGGTCTTCTGAAGTACATTTATGAGTTATACACAGATTATGTCTTGAAGAATCCATTCTATGAGATGGAGATGCCTATTCGGTGTGAGCTCTTTGATATCAACCTAGTGCAGGCAGTGCAAAAGGATCGTGTTGCTTTGCTTGGTCGATGAGCTTTCGATATCCTTCATTTTGCCAGTGTTAACCATCCACAATTCAAGAAAGAAAGGCTCATGATATTGTTGTCCAAATACTTGTTAATTTGCCTGCTAAATGTACTCCATGAATAGTGGCTCGTTTGATATTTGGTGGAAATAGTATGGTCCTTTTCTGTGTTCACTGGATAATCATGGTTAATTTTATATCCAATTTTCCGAATGATTAACGTTTGATCAGTTTGGATAAAAGAATGCATCCATTTCATGATTTTCATCACTGAATGCATCTGTAGTTGGGACATGTTTTCATCTGCCTGACCTGACTGCAACCAATTGTGCAGGCTTGAAGTTGCACTATGAACTGATAGGTATTGGAAGCATTTCTCAGAAGTTGGTCATTTGCTATCAAGGTCAGGCCAATATCATCTGCTAAATTTTCCAAGTTTATCTCTTTTCTTTCTCTAGAGATAACATATGTTGAAGAATCGACTACAAAGTTATTTTGTTGTAACAGCCCACGGCTAGTAGATATTGTCCCGTATTGTCTTCTTTAGGCTTTCCCTTTCGGACTTCCTCTCAAGGTTTTTAAAACGTGTTGGCTAGGGAGCGGGTTTCCATACCCTTATAAAGAATGTTTCGTTTCTCTCTCTCAATCGATGTGGGATCTCACAATCCACCTCCATTCGGGGTCCAACGTTCTCGCTCGCACTCGTTCTCCTCTTCAATCGATGTAGAATCCACAATCCACCTCCCTTTGGGGTCCAGGGTTCTCGCTGACACTCGTTCCCCTCTTCAATCGATGTAGTATCTCACACTCCACTTCCCTTTGAGGGCCAGCGTCCTTGCTGGCACTCATTCCCCTCTCCAATCGATGTGGAATATCAAATCCACTTTCCGTCGGGGCCCAATGTCCTCGTGGGCACTCGTTCGCCTCTCCAATCGATGTGGGATCTCAAATCCACCTCCCTTTGGGGTCCAGGGTTCTCGCTGACACTCATTCCCCTCTTTGGTCCTCTTTGACACTCATTCCCCTCTTTGGTCCTCTTTGACACTCATTCCCCTCTTTGGTCCTCTTTGACACTCATTCCGAGCTAGGAGATGTGGTCCTCTTTGGTTTCTCTATAAGGGGACTTAAGCAGATATTGTCATATCTCTGGGCTTTCTCTTTCAGGCTTTTCGTAAGGTTTCTAAAACGTGTCTGCTAGGGATAGGTTTCCATACATTTATAAAGAATGTTTCATTCCCCTCTCCAACCGAGTGGGGTCTCACATATTTAAACCTTGTTCATGAAGCAAACTCAAAACAAAATAATAAAAACAAGAAGGGACAGAGCAAACAATACTATCCCATGGTATTTTTATTCCATTAGGAATCAGATATGATTCTTTTTCTGGCAAACTTGACTACAAAAGAGATTATCAGCTCTCGCTTTTATCAAAGATTTACTGAATGTGGGCATTAGCAGTAGCATAGTGATTTACACTCATTGAAATATCACAGCTTAGGATCATACGTTTGTTCATGACTTCAATATCCAATGAGTTGATTCTGATGGCTTGATTACACCTTTTAACAAGTTTCTTTGATGTTACCAATGGATGATTATCTCTGAAAATCTTCTTCCGTGAGAGCTTAAAGGCTTTCTGGATATGTGCTTGAATTTCATGGTAATACTTCACACAATGCTTGAAACTCTTCTTCAGCTCAGGATCACTCTCATTCTTACTTAATTTGGAGAAGGAATCAAGGTTTTGATCGGCTTGGTTCTTCGTCAGATTGATGGATATAAGCGAGAGCTTAGGGAGGTCAGCCGAGATGGTACCGGGAACGTTACCAAGGATTCTCTGGCAGCTGAACGGATCGGGGGTTTTATAGCAAATGGTGGCCAGATTTCCATGGAGGATTCCATGAGAAGGGAAAATGGCTAGGTAAAAAACTGCCAGAAGAAGAACAGGGATGCCATGAGAGCAACCCATTGCAGGTTTCTCAGAAGAAGATCAGACCATTTGGGTCTTTGAAAGGTAACAAGCTGTTTAAGTAATGAGCTTGGAAGAAAAAGTAAGGTCAAAAGTAACTCTTTTCTTCA

mRNA sequence

ATTAGTTTAATTATTAATTTAATGTTTTAAATGGGCCTCTCTTCCATCCAGTCTCAAGAGCTCCCGAAACTCCCCCCACTGGCTTATGATCGGCGATCATTGAAACAGGATTTTGCGCCTTTGAATCTACACTGACAATCGCTTTCATTCCATTTCTTTCCTAGGACTTTAGAAGTTTCAACCCGGAAAGATCTGAAGAGGATGGCAGCAATTTACAGCCTCTACATCATCAACAAATCTGGTGGCTTGATCTTCTACAAGGATTATGGATCTGCTGGACGAATGGACACAAACGATAGCTTGAGAGTGGCGAGTTTATGGCATTCGATGCATGCCATTTCCCAGCAGCTTTCGCCTATTTCTGGTTGTTCGGGTACTGAACTCCTTGAAGCCGACACATTCGATCTCCATTGCTTCCAGTCACTTACTGGAACAAAGTTTTTTGTTGTGTGTGAGCCTGGGACACTGCACATGGAGGGTCTTCTGAAGTACATTTATGAGTTATACACAGATTATGTCTTGAAGAATCCATTCTATGAGATGGAGATGCCTATTCGGTGTGAGCTCTTTGATATCAACCTAGTGCAGGCAGTGCAAAAGGATCGTATTGATGGATATAAGCGAGAGCTTAGGGAGGTCAGCCGAGATGGTACCGGGAACGTTACCAAGGATTCTCTGGCAGCTGAACGGATCGGGGGTTTTATAGCAAATGGTGGCCAGATTTCCATGGAGGATTCCATGAGAAGGGAAAATGGCTAGGTAAAAAACTGCCAGAAGAAGAACAGGGATGCCATGAGAGCAACCCATTGCAGGTTTCTCAGAAGAAGATCAGACCATTTGGGTCTTTGAAAGGTAACAAGCTGTTTAAGTAATGAGCTTGGAAGAAAAAGTAAGGTCAAAAGTAACTCTTTTCTTCA

Coding sequence (CDS)

ATGGCAGCAATTTACAGCCTCTACATCATCAACAAATCTGGTGGCTTGATCTTCTACAAGGATTATGGATCTGCTGGACGAATGGACACAAACGATAGCTTGAGAGTGGCGAGTTTATGGCATTCGATGCATGCCATTTCCCAGCAGCTTTCGCCTATTTCTGGTTGTTCGGGTACTGAACTCCTTGAAGCCGACACATTCGATCTCCATTGCTTCCAGTCACTTACTGGAACAAAGTTTTTTGTTGTGTGTGAGCCTGGGACACTGCACATGGAGGGTCTTCTGAAGTACATTTATGAGTTATACACAGATTATGTCTTGAAGAATCCATTCTATGAGATGGAGATGCCTATTCGGTGTGAGCTCTTTGATATCAACCTAGTGCAGGCAGTGCAAAAGGATCGTATTGATGGATATAAGCGAGAGCTTAGGGAGGTCAGCCGAGATGGTACCGGGAACGTTACCAAGGATTCTCTGGCAGCTGAACGGATCGGGGGTTTTATAGCAAATGGTGGCCAGATTTCCATGGAGGATTCCATGAGAAGGGAAAATGGCTAG

Protein sequence

MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRCELFDINLVQAVQKDRIDGYKRELREVSRDGTGNVTKDSLAAERIGGFIANGGQISMEDSMRRENG

Homology

[Close]

BLAST of Carg11991 vs. NCBI nr
Match: KAG7030109.1 (Trafficking protein particle complex subunit 4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 376.7 bits (966), Expect = 1.1e-100
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLVQAVQKDRIDGYKRELREVSRDGTGNVTKDSLAAERIGGFIANGGQISMEDSM 180
           ELFDINLVQAVQKDRIDGYKRELREVSRDGTGNVTKDSLAAERIGGFIANGGQISMEDSM
Sbjct: 121 ELFDINLVQAVQKDRIDGYKRELREVSRDGTGNVTKDSLAAERIGGFIANGGQISMEDSM 180

Query: 181 RRENG 186
           RRENG
Sbjct: 181 RRENG 185

[Close]

BLAST of Carg11991 vs. NCBI nr
Match: XP_022946574.1 (trafficking protein particle complex subunit 4-like [Cucurbita moschata] >XP_022946710.1 trafficking protein particle complex subunit 4-like [Cucurbita moschata] >XP_022999309.1 trafficking protein particle complex subunit 4-like [Cucurbita maxima] >XP_022999558.1 trafficking protein particle complex subunit 4-like [Cucurbita maxima] >XP_023545338.1 trafficking protein particle complex subunit 4-like [Cucurbita pepo subsp. pepo] >KAG6599001.1 Trafficking protein particle complex subunit 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 281.6 bits (719), Expect = 5.0e-72
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLVQAVQKDRI 137
           ELFDINLVQAVQKDR+
Sbjct: 121 ELFDINLVQAVQKDRV 136

[Close]

BLAST of Carg11991 vs. NCBI nr
Match: KAG6599171.1 (Trafficking protein particle complex subunit 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 281.6 bits (719), Expect = 5.0e-72
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE
Sbjct: 46  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 105

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC
Sbjct: 106 LLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC 165

Query: 121 ELFDINLVQAVQKDRI 137
           ELFDINLVQAVQKDR+
Sbjct: 166 ELFDINLVQAVQKDRV 181

[Close]

BLAST of Carg11991 vs. NCBI nr
Match: XP_023521099.1 (trafficking protein particle complex subunit 4-like [Cucurbita pepo subsp. pepo] >XP_023522176.1 trafficking protein particle complex subunit 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 280.4 bits (716), Expect = 1.1e-71
Identity = 134/136 (98.53%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPGT+HMEGLLKYIYELYTDYVLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTVHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLVQAVQKDRI 137
           ELFDINLVQAVQKDR+
Sbjct: 121 ELFDINLVQAVQKDRV 136

[Close]

BLAST of Carg11991 vs. NCBI nr
Match: XP_022156391.1 (trafficking protein particle complex subunit 4 [Momordica charantia] >XP_022156392.1 trafficking protein particle complex subunit 4 [Momordica charantia] >XP_022156393.1 trafficking protein particle complex subunit 4 [Momordica charantia])

HSP 1 Score: 273.1 bits (697), Expect = 1.8e-69
Identity = 131/136 (96.32%), Postives = 133/136 (97.79%), Query Frame = 0


Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSG E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGIE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPGT HMEGLLKYIYELYTD+VLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLVQAVQKDRI 137
           ELFDINL QAVQKDR+
Sbjct: 121 ELFDINLSQAVQKDRV 136

[Close]

BLAST of Carg11991 vs. ExPASy Swiss-Prot
Match: Q54UU1 (Trafficking protein particle complex subunit 4 OS=Dictyostelium discoideum OX=44689 GN=trappc4 PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.6e-33
Identity = 66/125 (52.80%), Postives = 91/125 (72.80%), Query Frame = 0


Query: 4   IYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISG-CSGTELL 63
           I S+YI+NK+G LI+  D+G+  ++  N  +R+ S +HS+HAI+  LSP+SG  SG E++
Sbjct: 3   INSIYILNKAGTLIYQNDFGNTEKLSHNSYIRLGSTFHSLHAIASNLSPVSGSSSGIEVI 62

Query: 64  EADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRCEL 123
           E + F L CFQ+ TG KF+V+ +P    +E LL  +YELYTDYVLKNPFYE+EM IRC+L
Sbjct: 63  ETEAFKLQCFQTHTGIKFYVIADPNHQQLEELLHGVYELYTDYVLKNPFYEIEMQIRCDL 122

Query: 124 FDINL 128
           FD  L
Sbjct: 123 FDYKL 127

[Close]

BLAST of Carg11991 vs. ExPASy Swiss-Prot
Match: Q2TBL9 (Trafficking protein particle complex subunit 4 OS=Bos taurus OX=9913 GN=TRAPPC4 PE=2 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 6.4e-30
Identity = 60/106 (56.60%), Postives = 80/106 (75.47%), Query Frame = 0


Query: 27  RMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTGTKFFVVCEP 86
           R+ +N+ L +AS++HS+ AI  QLSP  G SG E+LE DTF LHCFQ+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADP 161

Query: 87  GTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRCELFDINLVQAVQ 133
               ++ LL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL  A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

[Close]

BLAST of Carg11991 vs. ExPASy Swiss-Prot
Match: Q9ES56 (Trafficking protein particle complex subunit 4 OS=Mus musculus OX=10090 GN=Trappc4 PE=1 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 6.4e-30
Identity = 60/106 (56.60%), Postives = 80/106 (75.47%), Query Frame = 0


Query: 27  RMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTGTKFFVVCEP 86
           R+ +N+ L +AS++HS+ AI  QLSP  G SG E+LE DTF LHCFQ+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADP 161

Query: 87  GTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRCELFDINLVQAVQ 133
               ++ LL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL  A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

[Close]

BLAST of Carg11991 vs. ExPASy Swiss-Prot
Match: Q69BT7 (Trafficking protein particle complex subunit 4 OS=Rattus norvegicus OX=10116 GN=Trappc4 PE=2 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 6.4e-30
Identity = 60/106 (56.60%), Postives = 80/106 (75.47%), Query Frame = 0


Query: 27  RMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTGTKFFVVCEP 86
           R+ +N+ L +AS++HS+ AI  QLSP  G SG E+LE DTF LHCFQ+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADP 161

Query: 87  GTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRCELFDINLVQAVQ 133
               ++ LL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL  A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

[Close]

BLAST of Carg11991 vs. ExPASy Swiss-Prot
Match: Q9Y296 (Trafficking protein particle complex subunit 4 OS=Homo sapiens OX=9606 GN=TRAPPC4 PE=1 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.4e-29
Identity = 59/106 (55.66%), Postives = 80/106 (75.47%), Query Frame = 0


Query: 27  RMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTGTKFFVVCEP 86
           R+ +N+ L +AS++HS+ AI  QLSP  G SG E+LE DTF LHC+Q+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADP 161

Query: 87  GTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRCELFDINLVQAVQ 133
               ++ LL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL  A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

[Close]

BLAST of Carg11991 vs. ExPASy TrEMBL
Match: A0A6J1KK16 (Trafficking protein particle complex subunit OS=Cucurbita maxima OX=3661 GN=LOC111493886 PE=3 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.4e-72
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLVQAVQKDRI 137
           ELFDINLVQAVQKDR+
Sbjct: 121 ELFDINLVQAVQKDRV 136

[Close]

BLAST of Carg11991 vs. ExPASy TrEMBL
Match: A0A6J1G4Q4 (Trafficking protein particle complex subunit OS=Cucurbita moschata OX=3662 GN=LOC111450702 PE=3 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.4e-72
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLVQAVQKDRI 137
           ELFDINLVQAVQKDR+
Sbjct: 121 ELFDINLVQAVQKDRV 136

[Close]

BLAST of Carg11991 vs. ExPASy TrEMBL
Match: A0A6J1DUU4 (Trafficking protein particle complex subunit OS=Momordica charantia OX=3673 GN=LOC111023297 PE=3 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 8.6e-70
Identity = 131/136 (96.32%), Postives = 133/136 (97.79%), Query Frame = 0


Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSG E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGIE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPGT HMEGLLKYIYELYTD+VLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLVQAVQKDRI 137
           ELFDINL QAVQKDR+
Sbjct: 121 ELFDINLSQAVQKDRV 136

[Close]

BLAST of Carg11991 vs. ExPASy TrEMBL
Match: A0A6P3YZH1 (Trafficking protein particle complex subunit OS=Ziziphus jujuba OX=326968 GN=LOC107407503 PE=3 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.5e-69
Identity = 129/136 (94.85%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLR+ASLWHSMHAISQQLSPISGCSG E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRMASLWHSMHAISQQLSPISGCSGIE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC 120
           LL+ADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLK+IYELYTDYVLKNPFYEMEMPIRC
Sbjct: 61  LLQADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKHIYELYTDYVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLVQAVQKDRI 137
           ELFDINL QA+QKDR+
Sbjct: 121 ELFDINLSQAIQKDRV 136

[Close]

BLAST of Carg11991 vs. ExPASy TrEMBL
Match: A0A5A7QJC5 (Trafficking protein particle complex subunit OS=Striga asiatica OX=4170 GN=STAS_21901 PE=3 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 3.3e-69
Identity = 129/136 (94.85%), Postives = 133/136 (97.79%), Query Frame = 0


Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLR+ASLWHSMHAISQQLSPISGCSG E
Sbjct: 55  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRLASLWHSMHAISQQLSPISGCSGIE 114

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC 120
           LL+ADTFDLHCFQSLTGTKFFVVCEPGTLHME LLK+IYELYTDYVLKNPFYEMEMPIRC
Sbjct: 115 LLQADTFDLHCFQSLTGTKFFVVCEPGTLHMEALLKHIYELYTDYVLKNPFYEMEMPIRC 174

Query: 121 ELFDINLVQAVQKDRI 137
           ELFDINL QAVQKDR+
Sbjct: 175 ELFDINLAQAVQKDRV 190

[Close]

BLAST of Carg11991 vs. TAIR 10
Match: AT5G02280.1 (SNARE-like superfamily protein )

HSP 1 Score: 257.7 bits (657), Expect = 7.2e-69
Identity = 122/136 (89.71%), Postives = 128/136 (94.12%), Query Frame = 0


Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 60
           MAAIYSLYIINKSGGLIFYKD G+ GRMDTNDSLRVASLWHSMHAISQQLSP++GCSG E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDCGTKGRMDTNDSLRVASLWHSMHAISQQLSPVNGCSGIE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSL GTKFFVVCEPGT HME LL+YIYELYTDYVLKNPFYE+EMPIRC
Sbjct: 61  LLEADTFDLHCFQSLPGTKFFVVCEPGTPHMESLLRYIYELYTDYVLKNPFYEIEMPIRC 120

Query: 121 ELFDINLVQAVQKDRI 137
           ELFDINL QAVQ DR+
Sbjct: 121 ELFDINLTQAVQSDRV 136

[Close]

BLAST of Carg11991 vs. TAIR 10
Match: AT1G51160.1 (SNARE-like superfamily protein )

HSP 1 Score: 64.7 bits (156), Expect = 8.9e-11
Identity = 40/144 (27.78%), Postives = 69/144 (47.92%), Query Frame = 0


Query: 5   YSLYIINKSGGLIFYKDYGSAGRM--DTNDSLRVASLWHSMHAISQQLSPIS-------- 64
           + +Y+ N++G  + YK++           D   +  L  S+ +++ ++ P++        
Sbjct: 24  HMMYVFNRNGVCLLYKEWNRPLHTLNPQQDHKLMFGLLFSLKSLTAKMDPVNADKGNLGV 83

Query: 65  ------GCSGTELLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLK 124
                 GCS       +T+ L   ++ +G K  +V  P T  +   LKYIY LY +YV+K
Sbjct: 84  PQLPGQGCS-FHSFRTNTYKLSFMETPSGIKIILVTHPKTGDLRESLKYIYSLYVEYVVK 143

Query: 125 NPFYEMEMPIRCELFDINLVQAVQ 133
           NP Y    PI+ ELF+  L Q V+
Sbjct: 144 NPIYSPGSPIKSELFNTALDQYVR 166

[Close]

BLAST of Carg11991 vs. TAIR 10
Match: AT1G51160.2 (SNARE-like superfamily protein )

HSP 1 Score: 64.7 bits (156), Expect = 8.9e-11
Identity = 40/144 (27.78%), Postives = 69/144 (47.92%), Query Frame = 0


Query: 5   YSLYIINKSGGLIFYKDYGSAGRM--DTNDSLRVASLWHSMHAISQQLSPIS-------- 64
           + +Y+ N++G  + YK++           D   +  L  S+ +++ ++ P++        
Sbjct: 24  HMMYVFNRNGVCLLYKEWNRPLHTLNPQQDHKLMFGLLFSLKSLTAKMDPVNADKGNLGV 83

Query: 65  ------GCSGTELLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLK 124
                 GCS       +T+ L   ++ +G K  +V  P T  +   LKYIY LY +YV+K
Sbjct: 84  PQLPGQGCS-FHSFRTNTYKLSFMETPSGIKIILVTHPKTGDLRESLKYIYSLYVEYVVK 143

Query: 125 NPFYEMEMPIRCELFDINLVQAVQ 133
           NP Y    PI+ ELF+  L Q V+
Sbjct: 144 NPIYSPGSPIKSELFNTALDQYVR 166

The following BLAST results are available for this feature:

BLAST of Carg11991 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7030109.1	1.1e-100	100.00	Trafficking protein particle complex subunit 4 [Cucurbita argyrosperma subsp. ar...	[more]
XP_022946574.1	5.0e-72	99.26	trafficking protein particle complex subunit 4-like [Cucurbita moschata] >XP_022...	[more]
KAG6599171.1	5.0e-72	99.26	Trafficking protein particle complex subunit 4, partial [Cucurbita argyrosperma ...	[more]
XP_023521099.1	1.1e-71	98.53	trafficking protein particle complex subunit 4-like [Cucurbita pepo subsp. pepo]...	[more]
XP_022156391.1	1.8e-69	96.32	trafficking protein particle complex subunit 4 [Momordica charantia] >XP_0221563...	[more]

BLAST of Carg11991 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q54UU1	3.6e-33	52.80	Trafficking protein particle complex subunit 4 OS=Dictyostelium discoideum OX=44...	[more]
Q2TBL9	6.4e-30	56.60	Trafficking protein particle complex subunit 4 OS=Bos taurus OX=9913 GN=TRAPPC4 ...	[more]
Q9ES56	6.4e-30	56.60	Trafficking protein particle complex subunit 4 OS=Mus musculus OX=10090 GN=Trapp...	[more]
Q69BT7	6.4e-30	56.60	Trafficking protein particle complex subunit 4 OS=Rattus norvegicus OX=10116 GN=...	[more]
Q9Y296	1.4e-29	55.66	Trafficking protein particle complex subunit 4 OS=Homo sapiens OX=9606 GN=TRAPPC...	[more]

BLAST of Carg11991 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KK16	2.4e-72	99.26	Trafficking protein particle complex subunit OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1G4Q4	2.4e-72	99.26	Trafficking protein particle complex subunit OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1DUU4	8.6e-70	96.32	Trafficking protein particle complex subunit OS=Momordica charantia OX=3673 GN=L...	[more]
A0A6P3YZH1	1.5e-69	94.85	Trafficking protein particle complex subunit OS=Ziziphus jujuba OX=326968 GN=LOC...	[more]
A0A5A7QJC5	3.3e-69	94.85	Trafficking protein particle complex subunit OS=Striga asiatica OX=4170 GN=STAS_...	[more]

BLAST of Carg11991 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02280.1	7.2e-69	89.71	SNARE-like superfamily protein	[more]
AT1G51160.1	8.9e-11	27.78	SNARE-like superfamily protein	[more]
AT1G51160.2	8.9e-11	27.78	SNARE-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007233	Trafficking protein particle complex subunit	SMART	SM01399	Sybindin_2	coord: 4..134 e-value: 1.2E-68 score: 244.0
IPR007233	Trafficking protein particle complex subunit	PFAM	PF04099	Sybindin	coord: 4..133 e-value: 3.1E-51 score: 173.1
IPR007233	Trafficking protein particle complex subunit	PANTHER	PTHR23249	TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT	coord: 1..136
None	No IPR available	GENE3D	3.30.450.70		coord: 2..133 e-value: 5.0E-47 score: 161.8
None	No IPR available	PANTHER	PTHR23249:SF17	TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT-RELATED	coord: 1..136
None	No IPR available	CDD	cd14856	TRAPPC4_synbindin	coord: 5..130 e-value: 1.80082E-84 score: 243.194
IPR011012	Longin-like domain superfamily	SUPERFAMILY	64356	SNARE-like	coord: 1..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11991-RA	Carg11991-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0030008	TRAPP complex