Carg11966 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg11966
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	F-box protein SKIP1-like
Location	Carg_Chr05: 8849239 .. 8851334 (-)
RNA-Seq Expression	Carg11966
Synteny	Carg11966

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAGCCATCGTGGGCGGAGCTGACGCAGGAGTGCCTAACCAACATCTTCTCTCGGCTAACCATCGAGCAGCGGTGGCGTGGACCCATGCTTGTCTGCAAGCTCTGGCTCCGCGCCGCCACCGACTCCTCTCTCTTTTCCCACTTCGACCTCGAACCCAGGTTCGACTCCACCCCCACCGAGTCCCCAGCCTGGTGGTCGCCCCAATTCGAGGCCAAAATTGATTCCATGCTCCGATCTGCCGTCCAATGGAGCCTTGGATCTCTTTCCCTTATTCGGATCAGACACTGCTCCGATTCATCTCTCCAATTGGTCGCTCAAGGGTAATTAATTCACTTCTTCTTCTTTAAATTTTAATTATAATTATCATGAACCTTTTATTGTTCAATTAGGGTAAAAGATTTCCTTCATTGTTTGGTGTTTTTCCCTCTTCAGCAAGCACTTTGCTCGTGAATTTTATGATCAAGTCAATTAAAAACTATCACTAGATCTTTGCATCTGTTTTAACCAATCAATGTGCAGTTCTTTTAGAATAAAAATTGTTGGATAACACATTCAAGATAGGAACGAACGATTTCTTGTTCTGGAAACACATCCTTTTCTTTATTCTCTTTGGTTGGTCCTTTTCTTGTTAGTTGGATATGCAAAACTGTAGCATAACTGTGAATTTTTATATAAATGTTGCTATAATATCACGAGGGATCGAAGCATTCCTTACAAGAGTGTGGAAATCTCTCTCTGCGTTTTATGAACCTCGTAGATATTGTCCTCTTTGAGCTTTTCCTCAAGGTTTTACAACGCGTCTGCTAGGGAGAGGTTTCCACACCCTTATATGGAATGCTTCGTTCCTCTCTCTCCAACCAATGTGGTATCTCACATATTAAGATAGATCGTTGTCCAATTACGTGGTCGATCCACTATGGATCATTTGGCAAGAGCTTGTTTGGATTGACCTTTTAAGGGTTTTAATAAATGTTAATCCAAAAGACTCTGGTCATGAGGTTTGGGTTTTGGATAAAATTGATGGCCTTCAACTTACTTACATTTTAGGTGTCCAAACCTTGAGGTTCTTTCCATCAAGAGCTGCGCCAATGTTACTGATAGATCAATGGCTAAGATTGCTCTTGGTTGCCAAAAGCTCCAGGAAGTAGATATCAGCTACTGTCATGAAATCTCGAACGTATCTTTGTCGTTAATCGGCAAGCATTGTCCAAATATCAAGACTCTAAAACGAAACTTTTTCAACACACTAGATCCTTCCCAACAAAAAGGAATTGTCCCTGACAGTTATCTAAATGCTTGCCCACAAGATGTGGATTCAGAAGCTGTGGCTATTGCAAAATTCATGCCCAACTTGGAGCACCTTCAACTCTGTTTCTCTAAACTCTCTGCTAAAGCTCTAACTTTGATCTGTAAAGGATGTCCAAATCTCAAGTACTTGGATCTGTTTGGGTGTGTGAACTTGACAAGTCGTGATATCGTGAATGCTACGTCGAGTCTGGAGAATTTGGAGATTAGGAAACCAAATTTCTATATTCCGAGGTCGGTCTTTCACACCGAGAGGTATGGCCATTGGAGGTTATACGACGAGAGATTCCAAACAGATATTTTCCGAATTTGATGGAGGTTACAGTCAAATGCAGGGTTAATACTCTCCTAATTCGATGTGTATCAGTGTTGTTTTACTAAGTTGTACAGTTCTTAATTTAGCTGTTTTGTTTCATGACAGTCCCAAATCTGTACTCTCTTTTGAATTTGTATGGTGGATTGATGCGACATAAGTTTTGTATAACTTATAGTTAACAGCAAATGGGTTTCAGGTTTAACCTTGTACATCCCTTCATGTTATTGTTTCCAAGATTGTTGGAACCATTTTTCTCTGTTCCTCTGAAACTCTTATCTCTCTCCATCAATATCACTGCTCTAAACAATTTTTTATTTCTAAAGCTTTGGTTTATTATATTTGAAATCCTACCTCTCGAGGTGGTCTTAGGATTAGGGAACGCTCAAAGCTCTTGTCTCCTTGATTTTTACGGGTTAAATTACAAGTTTAGTTTATAAACTTTCAGGTTTGCGTCTATTTGGTCACTAAA

mRNA sequence

ATGGCAGAGCCATCGTGGGCGGAGCTGACGCAGGAGTGCCTAACCAACATCTTCTCTCGGCTAACCATCGAGCAGCGGTGGCGTGGACCCATGCTTGTCTGCAAGCTCTGGCTCCGCGCCGCCACCGACTCCTCTCTCTTTTCCCACTTCGACCTCGAACCCAGGTTCGACTCCACCCCCACCGAGTCCCCAGCCTGGTGGTCGCCCCAATTCGAGGCCAAAATTGATTCCATGCTCCGATCTGCCGTCCAATGGAGCCTTGGATCTCTTTCCCTTATTCGGATCAGACACTGCTCCGATTCATCTCTCCAATTGGTCGCTCAAGGGTGTCCAAACCTTGAGGTTCTTTCCATCAAGAGCTGCGCCAATGTTACTGATAGATCAATGGCTAAGATTGCTCTTGGTTGCCAAAAGCTCCAGGAAGTAGATATCAGCTACTGTCATGAAATCTCGAACGTATCTTTGTCGTTAATCGGCAAGCATTGTCCAAATATCAAGACTCTAAAACGAAACTTTTTCAACACACTAGATCCTTCCCAACAAAAAGGAATTGTCCCTGACAGTTATCTAAATGCTTGCCCACAAGATGTGGATTCAGAAGCTGTGGCTATTGCAAAATTCATGCCCAACTTGGAGCACCTTCAACTCTGTTTCTCTAAACTCTCTGCTAAAGCTCTAACTTTGATCTGTAAAGGATGTCCAAATCTCAAGTACTTGGATCTGTTTGGGTGTGTGAACTTGACAAGTCGTGATATCGTGAATGCTACGTCGAGTCTGGAGAATTTGGAGATTAGGAAACCAAATTTCTATATTCCGAGGTCGGTCTTTCACACCGAGAGGTATGGCCATTGGAGGTTATACGACGAGAGATTCCAAACAGATATTTTCCGAATTTGATGGAGGTTACAGTCAAATGCAGGGTTAATACTCTCCTAATTCGATGTGTATCAGTGTTGTTTTACTAAGTTGTACAGTTCTTAATTTAGCTGTTTTGTTTCATGACAGTCCCAAATCTGTACTCTCTTTTGAATTTGTATGGTGGATTGATGCGACATAAGTTTTGTATAACTTATAGTTAACAGCAAATGGGTTTCAGGTTTAACCTTGTACATCCCTTCATGTTATTGTTTCCAAGATTGTTGGAACCATTTTTCTCTGTTCCTCTGAAACTCTTATCTCTCTCCATCAATATCACTGCTCTAAACAATTTTTTATTTCTAAAGCTTTGGTTTATTATATTTGAAATCCTACCTCTCGAGGTGGTCTTAGGATTAGGGAACGCTCAAAGCTCTTGTCTCCTTGATTTTTACGGGTTAAATTACAAGTTTAGTTTATAAACTTTCAGGTTTGCGTCTATTTGGTCACTAAA

Coding sequence (CDS)

ATGGCAGAGCCATCGTGGGCGGAGCTGACGCAGGAGTGCCTAACCAACATCTTCTCTCGGCTAACCATCGAGCAGCGGTGGCGTGGACCCATGCTTGTCTGCAAGCTCTGGCTCCGCGCCGCCACCGACTCCTCTCTCTTTTCCCACTTCGACCTCGAACCCAGGTTCGACTCCACCCCCACCGAGTCCCCAGCCTGGTGGTCGCCCCAATTCGAGGCCAAAATTGATTCCATGCTCCGATCTGCCGTCCAATGGAGCCTTGGATCTCTTTCCCTTATTCGGATCAGACACTGCTCCGATTCATCTCTCCAATTGGTCGCTCAAGGGTGTCCAAACCTTGAGGTTCTTTCCATCAAGAGCTGCGCCAATGTTACTGATAGATCAATGGCTAAGATTGCTCTTGGTTGCCAAAAGCTCCAGGAAGTAGATATCAGCTACTGTCATGAAATCTCGAACGTATCTTTGTCGTTAATCGGCAAGCATTGTCCAAATATCAAGACTCTAAAACGAAACTTTTTCAACACACTAGATCCTTCCCAACAAAAAGGAATTGTCCCTGACAGTTATCTAAATGCTTGCCCACAAGATGTGGATTCAGAAGCTGTGGCTATTGCAAAATTCATGCCCAACTTGGAGCACCTTCAACTCTGTTTCTCTAAACTCTCTGCTAAAGCTCTAACTTTGATCTGTAAAGGATGTCCAAATCTCAAGTACTTGGATCTGTTTGGGTGTGTGAACTTGACAAGTCGTGATATCGTGAATGCTACGTCGAGTCTGGAGAATTTGGAGATTAGGAAACCAAATTTCTATATTCCGAGGTCGGTCTTTCACACCGAGAGGTATGGCCATTGGAGGTTATACGACGAGAGATTCCAAACAGATATTTTCCGAATTTGA

Protein sequence

MAEPSWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPRFDSTPTESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKSCANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQQKGIVPDSYLNACPQDVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPNLKYLDLFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI

Homology

[Close]

BLAST of Carg11966 vs. NCBI nr
Match: KAG6599142.1 (F-box protein SKIP1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030085.1 F-box protein SKIP1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 615.5 bits (1586), Expect = 2.4e-172
Identity = 298/298 (100.00%), Postives = 298/298 (100.00%), Query Frame = 0


Query: 1   MAEPSWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPRFDSTP 60
           MAEPSWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPRFDSTP
Sbjct: 1   MAEPSWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPRFDSTP 60

Query: 61  TESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKS 120
           TESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKS
Sbjct: 61  TESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKS 120

Query: 121 CANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQ 180
           CANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQ
Sbjct: 121 CANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQ 180

Query: 181 QKGIVPDSYLNACPQDVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPNLKYLD 240
           QKGIVPDSYLNACPQDVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPNLKYLD
Sbjct: 181 QKGIVPDSYLNACPQDVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPNLKYLD 240

Query: 241 LFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI 299
           LFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI
Sbjct: 241 LFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI 298

[Close]

BLAST of Carg11966 vs. NCBI nr
Match: XP_022946543.1 (F-box protein SKIP1-like [Cucurbita moschata])

HSP 1 Score: 614.4 bits (1583), Expect = 5.2e-172
Identity = 297/298 (99.66%), Postives = 298/298 (100.00%), Query Frame = 0


Query: 1   MAEPSWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPRFDSTP 60
           MAEPSWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPRFDSTP
Sbjct: 1   MAEPSWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPRFDSTP 60

Query: 61  TESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKS 120
           TESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKS
Sbjct: 61  TESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKS 120

Query: 121 CANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQ 180
           CANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQ
Sbjct: 121 CANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQ 180

Query: 181 QKGIVPDSYLNACPQDVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPNLKYLD 240
           QKGIVPDSYLNACPQDVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPNLKYLD
Sbjct: 181 QKGIVPDSYLNACPQDVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPNLKYLD 240

Query: 241 LFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI 299
           LFGCVNLTSRDIVNATS+LENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI
Sbjct: 241 LFGCVNLTSRDIVNATSNLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI 298

[Close]

BLAST of Carg11966 vs. NCBI nr
Match: XP_023545430.1 (F-box protein SKIP1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 608.6 bits (1568), Expect = 2.9e-170
Identity = 294/298 (98.66%), Postives = 297/298 (99.66%), Query Frame = 0


Query: 1   MAEPSWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPRFDSTP 60
           MAEPSWAELTQECLTNIFSRLT EQRWRGPMLVCKLWLRAATDSSLFSHF+LEPRFDSTP
Sbjct: 1   MAEPSWAELTQECLTNIFSRLTTEQRWRGPMLVCKLWLRAATDSSLFSHFNLEPRFDSTP 60

Query: 61  TESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKS 120
           TESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKS
Sbjct: 61  TESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKS 120

Query: 121 CANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQ 180
           CANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQ
Sbjct: 121 CANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQ 180

Query: 181 QKGIVPDSYLNACPQDVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPNLKYLD 240
           QKGIVPDSYL+ACPQDVDSEAVAIAKFMPNLEHL+LCFSKLSAKALTLICKGCPNLKYLD
Sbjct: 181 QKGIVPDSYLSACPQDVDSEAVAIAKFMPNLEHLELCFSKLSAKALTLICKGCPNLKYLD 240

Query: 241 LFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI 299
           LFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI
Sbjct: 241 LFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI 298

[Close]

BLAST of Carg11966 vs. NCBI nr
Match: XP_022999743.1 (F-box protein SKIP1-like [Cucurbita maxima])

HSP 1 Score: 607.4 bits (1565), Expect = 6.4e-170
Identity = 293/298 (98.32%), Postives = 296/298 (99.33%), Query Frame = 0


Query: 1   MAEPSWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPRFDSTP 60
           MAE SWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDL+PRFDSTP
Sbjct: 1   MAEASWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLQPRFDSTP 60

Query: 61  TESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKS 120
           TESPAWWSPQFE KIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKS
Sbjct: 61  TESPAWWSPQFETKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKS 120

Query: 121 CANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQ 180
           CANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQ
Sbjct: 121 CANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQ 180

Query: 181 QKGIVPDSYLNACPQDVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPNLKYLD 240
           QKGIVPDSYLNACPQDVDSEAVAIAKFMPNLEHL+LCFSK+SAKALTLICKGCPNLKYLD
Sbjct: 181 QKGIVPDSYLNACPQDVDSEAVAIAKFMPNLEHLELCFSKVSAKALTLICKGCPNLKYLD 240

Query: 241 LFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI 299
           LFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI
Sbjct: 241 LFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI 298

[Close]

BLAST of Carg11966 vs. NCBI nr
Match: XP_038890479.1 (F-box protein SKIP1 [Benincasa hispida])

HSP 1 Score: 564.3 bits (1453), Expect = 6.2e-157
Identity = 271/303 (89.44%), Postives = 284/303 (93.73%), Query Frame = 0


Query: 1   MAEP-----SWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPR 60
           MAEP     SWAELT ECLTNI SRLTIEQRWRGPMLVCKLW RAATD SLFSHFDLEPR
Sbjct: 1   MAEPLSESSSWAELTHECLTNILSRLTIEQRWRGPMLVCKLWHRAATDPSLFSHFDLEPR 60

Query: 61  FDSTPTESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEV 120
           F+STPTESPAWWSP+FE KIDSMLRSAV WSLGSLSLIRIRHCSDSSL  VAQGCPNLEV
Sbjct: 61  FESTPTESPAWWSPEFETKIDSMLRSAVHWSLGSLSLIRIRHCSDSSLDFVAQGCPNLEV 120

Query: 121 LSIKSCANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNT 180
           LSIKSCANVTDRSMAKIALGCQKL+EVDISYCHEISN+SL+LIGKHCPNIKT+KRNFFN 
Sbjct: 121 LSIKSCANVTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCPNIKTIKRNFFNN 180

Query: 181 LDPSQQKGIVPDSYLNACPQDVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPN 240
           LDPSQ KGIVPD+YLN+CPQDVDSEA AIAKFMPNLEHL+L FSKLSAKAL+LIC+GCP 
Sbjct: 181 LDPSQHKGIVPDNYLNSCPQDVDSEAAAIAKFMPNLEHLELGFSKLSAKALSLICEGCPK 240

Query: 241 LKYLDLFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDI 299
           LK+LDLFGCVNLTSRDI NATSS+ENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDI
Sbjct: 241 LKFLDLFGCVNLTSRDIANATSSMENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDI 300

[Close]

BLAST of Carg11966 vs. ExPASy Swiss-Prot
Match: Q9FDX1 (F-box protein SKIP1 OS=Arabidopsis thaliana OX=3702 GN=SKIP1 PE=1 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 1.6e-91
Identity = 172/296 (58.11%), Postives = 210/296 (70.95%), Query Frame = 0


Query: 6   WAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPRFDSTPTESPA 65
           W  L  E L NI SRLTI++ W GPM V K WL    D  L+S FDLEP FDS P ES  
Sbjct: 8   WGGLAPEILINIISRLTIQELWTGPMFVQKSWLTVCRDPYLWSIFDLEPWFDSYP-ESTH 67

Query: 66  WWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKSCANVT 125
            WSP+FE K+D MLRS V WS G L+ IR+RHCSD +L   A  CPNL+VL+I+S  NVT
Sbjct: 68  LWSPEFEQKVDLMLRSVVDWSEGGLTKIRVRHCSDHALSYAADRCPNLQVLAIRSSPNVT 127

Query: 126 DRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQQKGIV 185
           D SM KIA  C+ L+E+DISYCHEIS+ +L +IG++CPN++ LKRN  +    S+  G V
Sbjct: 128 DASMTKIAFRCRSLKELDISYCHEISHDTLVMIGRNCPNLRILKRNLMDW--SSRHIGSV 187

Query: 186 PDSYLNACPQDVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPNLKYLDLFGCV 245
           P  YL+ACPQD D+EA AI K M NLEHL++ FS+LS K L  IC+GCP L+YLDLFGCV
Sbjct: 188 PTEYLDACPQDGDTEADAIGKHMINLEHLEIQFSRLSVKGLASICEGCPKLEYLDLFGCV 247

Query: 246 NLTSRDIVNATSSLENL-EIRKPNFYIPRS--VFHTERYGHWRLYDERFQTDIFRI 299
           +L+SRDI +  S L+ L E++KP+ Y+PRS  V  TERYGHWRLYDERF     RI
Sbjct: 248 HLSSRDITSNVSRLKWLKEVKKPDVYVPRSGDVAQTERYGHWRLYDERFDIQAMRI 300

[Close]

BLAST of Carg11966 vs. ExPASy Swiss-Prot
Match: Q9M096 (Putative F-box/LRR-repeat protein 19 OS=Arabidopsis thaliana OX=3702 GN=FBL19 PE=4 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 5.2e-74
Identity = 147/283 (51.94%), Postives = 190/283 (67.14%), Query Frame = 0


Query: 4   PSWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPRFDSTPTES 63
           P W+ELT+ECL +IFSRL+ EQRW GPMLV K W+ A  D +L + FDLE RF S P ES
Sbjct: 18  PDWSELTRECLLDIFSRLSQEQRWIGPMLVSKNWMNACYDPTLNTIFDLETRFLSFP-ES 77

Query: 64  PAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKSCAN 123
             WW+P+FE K+DS LRS V  S G L+ IRIRHC++ SL   A+ CPNLEVL IK+C N
Sbjct: 78  INWWTPEFEDKVDSFLRSVVDRSEGGLTEIRIRHCTERSLSYAAERCPNLEVLWIKNCPN 137

Query: 124 VTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQQKG 183
           VTD SM KIA+ C  L+E+DISY + I++ SL  +G+ C N+K LKRN    L PS    
Sbjct: 138 VTDASMEKIAMNCPNLRELDISYSYGITHESLITLGRSCQNLKILKRNLLPRLGPSLPTI 197

Query: 184 IVPDSYLNACPQDVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPNLKYLDLFG 243
           + P  YL   P+  + EA  I K+M  L+HL++ +S L+A+ L  +CKGC NL+Y+DL G
Sbjct: 198 VAPLDYLATFPRYGNIEARIIGKYMTQLKHLEIRYSTLTARGLDSVCKGCSNLEYMDLRG 257

Query: 244 CVNLTSRDIVNATSSLENL-EIRKPNFYIPRSVFHTERYGHWR 286
           C++LT  DI   TS L+NL EI KP+F  P +V    R G+ R
Sbjct: 258 CISLTRSDINTNTSGLKNLTEIIKPDFNPPIAVLRVPRPGNPR 299

[Close]

BLAST of Carg11966 vs. ExPASy Swiss-Prot
Match: Q9S9V9 (Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana OX=3702 GN=FBL23 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 5.0e-24
Identity = 81/244 (33.20%), Postives = 116/244 (47.54%), Query Frame = 0


Query: 5   SWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPRFDSTPTESP 64
           +WAEL  +  ++I  RL   +  +    VCK W R   D S++   D++ R D       
Sbjct: 180 NWAELPSKLTSSILLRLGAIEILQNAQKVCKPWHRVCKDPSMWRKIDIDNRNDRA----- 239

Query: 65  AWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSL-QLVAQGCPNLEVLSIKSCAN 124
                 F+  ++SM R AV  S G L  I I +   + L   +A    NL+ L +  C  
Sbjct: 240 -----AFKYDLESMCRHAVDRSHGGLIEIEIWYYGTNDLIMYIADRSSNLKSLGLVRCFP 299

Query: 125 VTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQQKG 184
           +TD  +AK       L+ +++SYC   S  SL  IG+ CPN+KTLK N            
Sbjct: 300 ITDEGVAKAVSKVPLLEYLEVSYC-LFSGESLRDIGRSCPNLKTLKLN------------ 359

Query: 185 IVPDSYLNACPQDVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPNLKYLDLFG 244
             P+   +      D  A AIA+ MP L HLQL  + L+ K L  I  GCP+L++LDL  
Sbjct: 360 RAPEIMFS--NSGFDDNAKAIAESMPELRHLQLLGNGLTNKGLNAILDGCPHLEHLDLRQ 398

Query: 245 CVNL 248
           C N+
Sbjct: 420 CFNI 398

[Close]

BLAST of Carg11966 vs. ExPASy Swiss-Prot
Match: Q9S9V8 (Putative F-box/LRR-repeat protein 9 OS=Arabidopsis thaliana OX=3702 GN=FBL9 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 5.5e-23
Identity = 79/247 (31.98%), Postives = 115/247 (46.56%), Query Frame = 0


Query: 5   SWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPRFDSTPTESP 64
           +WAEL  E  ++I  RL   +  +    VCK W R   D S++   D+  + +       
Sbjct: 20  NWAELPPELTSSILLRLGAIEILQNAQRVCKSWRRVCQDPSMWRKIDIRIKENLVN---- 79

Query: 65  AWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSS-LQLVAQGCPNLEVLSIKSCAN 124
              S +    I+ +   AV  S G L  I I +  ++S L  +A    NL  L +  CA 
Sbjct: 80  ---SVELFYVIEPLCCRAVDLSQGGLLEINIDYLVNTSFLNYIADRSSNLRRLGVVDCAP 139

Query: 125 VTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQQKG 184
           V  R + + A+    L+E+DI+Y   I    L ++G+ CPN++TLK N            
Sbjct: 140 VLSRGVVEAAMKLPLLEELDITYKSSIREQELKVVGQSCPNLRTLKLN------------ 199

Query: 185 IVPDSYLNACPQDV---DSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPNLKYLD 244
                    C  DV   D  A+AIA+ MP L HLQL  + LS   L  I +GCP+LK L 
Sbjct: 200 ---------CTGDVKCCDKVALAIAETMPGLRHLQLFRNGLSETGLNAILEGCPHLKNLG 238

Query: 245 LFGCVNL 248
           L  C+N+
Sbjct: 260 LHQCLNI 238

[Close]

BLAST of Carg11966 vs. ExPASy Swiss-Prot
Match: Q9M0U9 (F-box protein SKIP19 OS=Arabidopsis thaliana OX=3702 GN=SKIP19 PE=1 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.7e-19
Identity = 77/245 (31.43%), Postives = 110/245 (44.90%), Query Frame = 0


Query: 5   SWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPRFDSTPTESP 64
           +W EL  E  + I  RL   +       VC+ W R   D S++   D+    D       
Sbjct: 18  NWTELPPELTSAILHRLGAIEILENAQKVCRSWRRVCKDPSMWRKIDMHNLGD------- 77

Query: 65  AWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSD-SSLQLVAQGCPNLEVLSIKSCAN 124
                  +  ++ M R AV  S G L  I I +      L  +A    NL  L +  C+ 
Sbjct: 78  ---LDDMDYNLEIMCRHAVDRSQGGLVDIGIWYFGTVDLLNYIAHRSSNLRSLRLIRCSQ 137

Query: 125 VTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQQKG 184
           +TD    + A+    L+E+++SYC   S  SL ++G+ C N+KTLK              
Sbjct: 138 ITDDGFVE-AVVKLPLEELELSYC-SFSVESLRVVGQCCLNMKTLK-------------- 197

Query: 185 IVPDSYLNACPQ-DVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPNLKYLDLF 244
                 LN  PQ + D +A+AIA+ MP L HLQLC + LS   L  I   C NL++LDL 
Sbjct: 198 ------LNKHPQKENDDDALAIAETMPKLRHLQLCGNGLSDTGLNAILDNCSNLEHLDLR 230

Query: 245 GCVNL 248
            C N+
Sbjct: 258 RCFNV 230

[Close]

BLAST of Carg11966 vs. ExPASy TrEMBL
Match: A0A6J1G461 (F-box protein SKIP1-like OS=Cucurbita moschata OX=3662 GN=LOC111450576 PE=4 SV=1)

HSP 1 Score: 614.4 bits (1583), Expect = 2.5e-172
Identity = 297/298 (99.66%), Postives = 298/298 (100.00%), Query Frame = 0


Query: 1   MAEPSWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPRFDSTP 60
           MAEPSWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPRFDSTP
Sbjct: 1   MAEPSWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPRFDSTP 60

Query: 61  TESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKS 120
           TESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKS
Sbjct: 61  TESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKS 120

Query: 121 CANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQ 180
           CANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQ
Sbjct: 121 CANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQ 180

Query: 181 QKGIVPDSYLNACPQDVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPNLKYLD 240
           QKGIVPDSYLNACPQDVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPNLKYLD
Sbjct: 181 QKGIVPDSYLNACPQDVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPNLKYLD 240

Query: 241 LFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI 299
           LFGCVNLTSRDIVNATS+LENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI
Sbjct: 241 LFGCVNLTSRDIVNATSNLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI 298

[Close]

BLAST of Carg11966 vs. ExPASy TrEMBL
Match: A0A6J1KKL1 (F-box protein SKIP1-like OS=Cucurbita maxima OX=3661 GN=LOC111494002 PE=4 SV=1)

HSP 1 Score: 607.4 bits (1565), Expect = 3.1e-170
Identity = 293/298 (98.32%), Postives = 296/298 (99.33%), Query Frame = 0


Query: 1   MAEPSWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPRFDSTP 60
           MAE SWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDL+PRFDSTP
Sbjct: 1   MAEASWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLQPRFDSTP 60

Query: 61  TESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKS 120
           TESPAWWSPQFE KIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKS
Sbjct: 61  TESPAWWSPQFETKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKS 120

Query: 121 CANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQ 180
           CANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQ
Sbjct: 121 CANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQ 180

Query: 181 QKGIVPDSYLNACPQDVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPNLKYLD 240
           QKGIVPDSYLNACPQDVDSEAVAIAKFMPNLEHL+LCFSK+SAKALTLICKGCPNLKYLD
Sbjct: 181 QKGIVPDSYLNACPQDVDSEAVAIAKFMPNLEHLELCFSKVSAKALTLICKGCPNLKYLD 240

Query: 241 LFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI 299
           LFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI
Sbjct: 241 LFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI 298

[Close]

BLAST of Carg11966 vs. ExPASy TrEMBL
Match: A0A5D3BD72 (F-box protein SKIP1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G00320 PE=4 SV=1)

HSP 1 Score: 546.6 bits (1407), Expect = 6.5e-152
Identity = 263/303 (86.80%), Postives = 277/303 (91.42%), Query Frame = 0


Query: 1   MAEP-----SWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPR 60
           MAEP     SWAELT ECLTNI SRLTIEQRWRGPMLVCK W RAA D SLFSHFDLEPR
Sbjct: 1   MAEPSSESSSWAELTHECLTNILSRLTIEQRWRGPMLVCKHWFRAARDPSLFSHFDLEPR 60

Query: 61  FDSTPTESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEV 120
           F+S PTESPAWW P+FE KIDSMLRSAV+WSLGSLS+IR+RHCSDSSL  VAQGCPNLEV
Sbjct: 61  FESAPTESPAWWLPEFETKIDSMLRSAVRWSLGSLSVIRVRHCSDSSLDFVAQGCPNLEV 120

Query: 121 LSIKSCANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNT 180
           LSIKSCANVTD SMAKIA GCQKL+EVDISYCHEISN+SL+LIG+HCPNIKTLKRN+FN 
Sbjct: 121 LSIKSCANVTDSSMAKIAFGCQKLREVDISYCHEISNISLALIGRHCPNIKTLKRNYFNN 180

Query: 181 LDPSQQKGIVPDSYLNACPQDVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPN 240
           LDPSQ KGIVPD+YL+ACPQDVDSEA AIAKFM NLEHL+L FSKLSAKALT IC+GCPN
Sbjct: 181 LDPSQHKGIVPDNYLDACPQDVDSEAAAIAKFMHNLEHLELGFSKLSAKALTSICEGCPN 240

Query: 241 LKYLDLFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDI 299
           LKYLDLFGCVNLTSRDI NATSSLENLEIRKPNFYIPRSVFHTERY HWRLYDERFQTDI
Sbjct: 241 LKYLDLFGCVNLTSRDIANATSSLENLEIRKPNFYIPRSVFHTERYDHWRLYDERFQTDI 300

[Close]

BLAST of Carg11966 vs. ExPASy TrEMBL
Match: A0A1S3BUE6 (F-box protein SKIP1 OS=Cucumis melo OX=3656 GN=LOC103493639 PE=4 SV=1)

HSP 1 Score: 546.6 bits (1407), Expect = 6.5e-152
Identity = 263/303 (86.80%), Postives = 277/303 (91.42%), Query Frame = 0


Query: 1   MAEP-----SWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPR 60
           MAEP     SWAELT ECLTNI SRLTIEQRWRGPMLVCK W RAA D SLFSHFDLEPR
Sbjct: 1   MAEPSSESSSWAELTHECLTNILSRLTIEQRWRGPMLVCKHWFRAARDPSLFSHFDLEPR 60

Query: 61  FDSTPTESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEV 120
           F+S PTESPAWW P+FE KIDSMLRSAV+WSLGSLS+IR+RHCSDSSL  VAQGCPNLEV
Sbjct: 61  FESAPTESPAWWLPEFETKIDSMLRSAVRWSLGSLSVIRVRHCSDSSLDFVAQGCPNLEV 120

Query: 121 LSIKSCANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNT 180
           LSIKSCANVTD SMAKIA GCQKL+EVDISYCHEISN+SL+LIG+HCPNIKTLKRN+FN 
Sbjct: 121 LSIKSCANVTDSSMAKIAFGCQKLREVDISYCHEISNISLALIGRHCPNIKTLKRNYFNN 180

Query: 181 LDPSQQKGIVPDSYLNACPQDVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPN 240
           LDPSQ KGIVPD+YL+ACPQDVDSEA AIAKFM NLEHL+L FSKLSAKALT IC+GCPN
Sbjct: 181 LDPSQHKGIVPDNYLDACPQDVDSEAAAIAKFMHNLEHLELGFSKLSAKALTSICEGCPN 240

Query: 241 LKYLDLFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDI 299
           LKYLDLFGCVNLTSRDI NATSSLENLEIRKPNFYIPRSVFHTERY HWRLYDERFQTDI
Sbjct: 241 LKYLDLFGCVNLTSRDIANATSSLENLEIRKPNFYIPRSVFHTERYDHWRLYDERFQTDI 300

[Close]

BLAST of Carg11966 vs. ExPASy TrEMBL
Match: A0A5A7UJH9 (F-box protein SKIP1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold323G00770 PE=4 SV=1)

HSP 1 Score: 544.7 bits (1402), Expect = 2.5e-151
Identity = 262/303 (86.47%), Postives = 276/303 (91.09%), Query Frame = 0


Query: 1   MAEP-----SWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPR 60
           MAEP     SWAELT ECLTNI SRLTIEQRWRGPMLVCK W  AA D SLFSHFDLEPR
Sbjct: 1   MAEPSSESSSWAELTHECLTNILSRLTIEQRWRGPMLVCKHWFHAARDPSLFSHFDLEPR 60

Query: 61  FDSTPTESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEV 120
           F+S PTESPAWW P+FE KIDSMLRSAV+WSLGSLS+IR+RHCSDSSL  VAQGCPNLEV
Sbjct: 61  FESAPTESPAWWLPEFETKIDSMLRSAVRWSLGSLSVIRVRHCSDSSLDFVAQGCPNLEV 120

Query: 121 LSIKSCANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNT 180
           LSIKSCANVTD SMAKIA GCQKL+EVDISYCHEISN+SL+LIG+HCPNIKTLKRN+FN 
Sbjct: 121 LSIKSCANVTDSSMAKIAFGCQKLREVDISYCHEISNISLALIGRHCPNIKTLKRNYFNN 180

Query: 181 LDPSQQKGIVPDSYLNACPQDVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPN 240
           LDPSQ KGIVPD+YL+ACPQDVDSEA AIAKFM NLEHL+L FSKLSAKALT IC+GCPN
Sbjct: 181 LDPSQHKGIVPDNYLDACPQDVDSEAAAIAKFMHNLEHLELGFSKLSAKALTSICEGCPN 240

Query: 241 LKYLDLFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDI 299
           LKYLDLFGCVNLTSRDI NATSSLENLEIRKPNFYIPRSVFHTERY HWRLYDERFQTDI
Sbjct: 241 LKYLDLFGCVNLTSRDIANATSSLENLEIRKPNFYIPRSVFHTERYDHWRLYDERFQTDI 300

[Close]

BLAST of Carg11966 vs. TAIR 10
Match: AT5G57900.1 (SKP1 interacting partner 1 )

HSP 1 Score: 337.4 bits (864), Expect = 1.2e-92
Identity = 172/296 (58.11%), Postives = 210/296 (70.95%), Query Frame = 0


Query: 6   WAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPRFDSTPTESPA 65
           W  L  E L NI SRLTI++ W GPM V K WL    D  L+S FDLEP FDS P ES  
Sbjct: 8   WGGLAPEILINIISRLTIQELWTGPMFVQKSWLTVCRDPYLWSIFDLEPWFDSYP-ESTH 67

Query: 66  WWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKSCANVT 125
            WSP+FE K+D MLRS V WS G L+ IR+RHCSD +L   A  CPNL+VL+I+S  NVT
Sbjct: 68  LWSPEFEQKVDLMLRSVVDWSEGGLTKIRVRHCSDHALSYAADRCPNLQVLAIRSSPNVT 127

Query: 126 DRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQQKGIV 185
           D SM KIA  C+ L+E+DISYCHEIS+ +L +IG++CPN++ LKRN  +    S+  G V
Sbjct: 128 DASMTKIAFRCRSLKELDISYCHEISHDTLVMIGRNCPNLRILKRNLMDW--SSRHIGSV 187

Query: 186 PDSYLNACPQDVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPNLKYLDLFGCV 245
           P  YL+ACPQD D+EA AI K M NLEHL++ FS+LS K L  IC+GCP L+YLDLFGCV
Sbjct: 188 PTEYLDACPQDGDTEADAIGKHMINLEHLEIQFSRLSVKGLASICEGCPKLEYLDLFGCV 247

Query: 246 NLTSRDIVNATSSLENL-EIRKPNFYIPRS--VFHTERYGHWRLYDERFQTDIFRI 299
           +L+SRDI +  S L+ L E++KP+ Y+PRS  V  TERYGHWRLYDERF     RI
Sbjct: 248 HLSSRDITSNVSRLKWLKEVKKPDVYVPRSGDVAQTERYGHWRLYDERFDIQAMRI 300

[Close]

BLAST of Carg11966 vs. TAIR 10
Match: AT4G30640.1 (RNI-like superfamily protein )

HSP 1 Score: 279.3 bits (713), Expect = 3.7e-75
Identity = 147/283 (51.94%), Postives = 190/283 (67.14%), Query Frame = 0


Query: 4   PSWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPRFDSTPTES 63
           P W+ELT+ECL +IFSRL+ EQRW GPMLV K W+ A  D +L + FDLE RF S P ES
Sbjct: 18  PDWSELTRECLLDIFSRLSQEQRWIGPMLVSKNWMNACYDPTLNTIFDLETRFLSFP-ES 77

Query: 64  PAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKSCAN 123
             WW+P+FE K+DS LRS V  S G L+ IRIRHC++ SL   A+ CPNLEVL IK+C N
Sbjct: 78  INWWTPEFEDKVDSFLRSVVDRSEGGLTEIRIRHCTERSLSYAAERCPNLEVLWIKNCPN 137

Query: 124 VTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQQKG 183
           VTD SM KIA+ C  L+E+DISY + I++ SL  +G+ C N+K LKRN    L PS    
Sbjct: 138 VTDASMEKIAMNCPNLRELDISYSYGITHESLITLGRSCQNLKILKRNLLPRLGPSLPTI 197

Query: 184 IVPDSYLNACPQDVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPNLKYLDLFG 243
           + P  YL   P+  + EA  I K+M  L+HL++ +S L+A+ L  +CKGC NL+Y+DL G
Sbjct: 198 VAPLDYLATFPRYGNIEARIIGKYMTQLKHLEIRYSTLTARGLDSVCKGCSNLEYMDLRG 257

Query: 244 CVNLTSRDIVNATSSLENL-EIRKPNFYIPRSVFHTERYGHWR 286
           C++LT  DI   TS L+NL EI KP+F  P +V    R G+ R
Sbjct: 258 CISLTRSDINTNTSGLKNLTEIIKPDFNPPIAVLRVPRPGNPR 299

[Close]

BLAST of Carg11966 vs. TAIR 10
Match: AT4G05497.1 (RNI-like superfamily protein )

HSP 1 Score: 109.8 bits (273), Expect = 3.9e-24
Identity = 79/247 (31.98%), Postives = 115/247 (46.56%), Query Frame = 0


Query: 5   SWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPRFDSTPTESP 64
           +WAEL  E  ++I  RL   +  +    VCK W R   D S++   D+  + +       
Sbjct: 20  NWAELPPELTSSILLRLGAIEILQNAQRVCKSWRRVCQDPSMWRKIDIRIKENLVN---- 79

Query: 65  AWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSS-LQLVAQGCPNLEVLSIKSCAN 124
              S +    I+ +   AV  S G L  I I +  ++S L  +A    NL  L +  CA 
Sbjct: 80  ---SVELFYVIEPLCCRAVDLSQGGLLEINIDYLVNTSFLNYIADRSSNLRRLGVVDCAP 139

Query: 125 VTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQQKG 184
           V  R + + A+    L+E+DI+Y   I    L ++G+ CPN++TLK N            
Sbjct: 140 VLSRGVVEAAMKLPLLEELDITYKSSIREQELKVVGQSCPNLRTLKLN------------ 199

Query: 185 IVPDSYLNACPQDV---DSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPNLKYLD 244
                    C  DV   D  A+AIA+ MP L HLQL  + LS   L  I +GCP+LK L 
Sbjct: 200 ---------CTGDVKCCDKVALAIAETMPGLRHLQLFRNGLSETGLNAILEGCPHLKNLG 238

Query: 245 LFGCVNL 248
           L  C+N+
Sbjct: 260 LHQCLNI 238

[Close]

BLAST of Carg11966 vs. TAIR 10
Match: AT4G05460.1 (RNI-like superfamily protein )

HSP 1 Score: 97.1 bits (240), Expect = 2.6e-20
Identity = 77/245 (31.43%), Postives = 110/245 (44.90%), Query Frame = 0


Query: 5   SWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPRFDSTPTESP 64
           +W EL  E  + I  RL   +       VC+ W R   D S++   D+    D       
Sbjct: 18  NWTELPPELTSAILHRLGAIEILENAQKVCRSWRRVCKDPSMWRKIDMHNLGD------- 77

Query: 65  AWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSD-SSLQLVAQGCPNLEVLSIKSCAN 124
                  +  ++ M R AV  S G L  I I +      L  +A    NL  L +  C+ 
Sbjct: 78  ---LDDMDYNLEIMCRHAVDRSQGGLVDIGIWYFGTVDLLNYIAHRSSNLRSLRLIRCSQ 137

Query: 125 VTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQQKG 184
           +TD    + A+    L+E+++SYC   S  SL ++G+ C N+KTLK              
Sbjct: 138 ITDDGFVE-AVVKLPLEELELSYC-SFSVESLRVVGQCCLNMKTLK-------------- 197

Query: 185 IVPDSYLNACPQ-DVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPNLKYLDLF 244
                 LN  PQ + D +A+AIA+ MP L HLQLC + LS   L  I   C NL++LDL 
Sbjct: 198 ------LNKHPQKENDDDALAIAETMPKLRHLQLCGNGLSDTGLNAILDNCSNLEHLDLR 230

Query: 245 GCVNL 248
            C N+
Sbjct: 258 RCFNV 230

[Close]

BLAST of Carg11966 vs. TAIR 10
Match: AT5G52480.1 (RNI-like superfamily protein )

HSP 1 Score: 91.7 bits (226), Expect = 1.1e-18
Identity = 63/173 (36.42%), Postives = 92/173 (53.18%), Query Frame = 0


Query: 76  DSMLRSAVQWSLGSLSLIRIRHC-SDSSLQLVAQGCPNLEVLSIKSCANVTDRSMAKIAL 135
           +++ R+AV  S G L  I I    SDS L  +A+   NL  L +  C+ +TD    +  +
Sbjct: 16  EAICRNAVDRSEGGLLEINIGDFGSDSLLTYIAERSSNLRSLRL-MCSEITDDGFVQAVV 75

Query: 136 GCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQQKGIVPDSYLNACP 195
               L+E+++S    +S  S+ L G  CPN+KTL  N                 YL++  
Sbjct: 76  KLPMLEELEVSGI-SLSGESMKLAGLSCPNLKTLMLNRL--------------FYLSS-- 135

Query: 196 QDVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPNLKYLDLFGCVNL 248
            D D +A+AIA+ MP L HLQLC +KL+   L  I  GCP+L++LDL  C+NL
Sbjct: 136 DDDDHDAIAIAESMPKLRHLQLCGNKLTKTGLNAILDGCPHLEHLDLRQCINL 170

The following BLAST results are available for this feature:

BLAST of Carg11966 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6599142.1	2.4e-172	100.00	F-box protein SKIP1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030085...	[more]
XP_022946543.1	5.2e-172	99.66	F-box protein SKIP1-like [Cucurbita moschata]	[more]
XP_023545430.1	2.9e-170	98.66	F-box protein SKIP1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022999743.1	6.4e-170	98.32	F-box protein SKIP1-like [Cucurbita maxima]	[more]
XP_038890479.1	6.2e-157	89.44	F-box protein SKIP1 [Benincasa hispida]	[more]

BLAST of Carg11966 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FDX1	1.6e-91	58.11	F-box protein SKIP1 OS=Arabidopsis thaliana OX=3702 GN=SKIP1 PE=1 SV=1	[more]
Q9M096	5.2e-74	51.94	Putative F-box/LRR-repeat protein 19 OS=Arabidopsis thaliana OX=3702 GN=FBL19 PE...	[more]
Q9S9V9	5.0e-24	33.20	Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana OX=3702 GN=FBL23 PE...	[more]
Q9S9V8	5.5e-23	31.98	Putative F-box/LRR-repeat protein 9 OS=Arabidopsis thaliana OX=3702 GN=FBL9 PE=4...	[more]
Q9M0U9	3.7e-19	31.43	F-box protein SKIP19 OS=Arabidopsis thaliana OX=3702 GN=SKIP19 PE=1 SV=1	[more]

BLAST of Carg11966 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G461	2.5e-172	99.66	F-box protein SKIP1-like OS=Cucurbita moschata OX=3662 GN=LOC111450576 PE=4 SV=1	[more]
A0A6J1KKL1	3.1e-170	98.32	F-box protein SKIP1-like OS=Cucurbita maxima OX=3661 GN=LOC111494002 PE=4 SV=1	[more]
A0A5D3BD72	6.5e-152	86.80	F-box protein SKIP1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G...	[more]
A0A1S3BUE6	6.5e-152	86.80	F-box protein SKIP1 OS=Cucumis melo OX=3656 GN=LOC103493639 PE=4 SV=1	[more]
A0A5A7UJH9	2.5e-151	86.47	F-box protein SKIP1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold323G...	[more]

BLAST of Carg11966 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57900.1	1.2e-92	58.11	SKP1 interacting partner 1	[more]
AT4G30640.1	3.7e-75	51.94	RNI-like superfamily protein	[more]
AT4G05497.1	3.9e-24	31.98	RNI-like superfamily protein	[more]
AT4G05460.1	2.6e-20	31.43	RNI-like superfamily protein	[more]
AT5G52480.1	1.1e-18	36.42	RNI-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006553	Leucine-rich repeat, cysteine-containing subtype	SMART	SM00367	LRR_CC_2	coord: 208..232 e-value: 130.0 score: 5.9 coord: 136..161 e-value: 0.014 score: 24.6 coord: 110..135 e-value: 2.1E-4 score: 30.6 coord: 233..258 e-value: 0.017 score: 24.3 coord: 87..109 e-value: 140.0 score: 5.5
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 75..269 e-value: 4.4E-33 score: 116.3
IPR001611	Leucine-rich repeat	PFAM	PF13516	LRR_6	coord: 136..158 e-value: 0.36 score: 11.0
None	No IPR available	GENE3D	1.20.1280.50		coord: 5..46 e-value: 3.3E-8 score: 35.2
None	No IPR available	PANTHER	PTHR16134	F-BOX/TPR REPEAT PROTEIN POF3	coord: 6..298
None	No IPR available	PANTHER	PTHR16134:SF29	F-BOX PROTEIN SKIP1	coord: 6..298
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 82..261
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 3..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11966-RA	Carg11966-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding