Carg11964 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg11964
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Translation initiation factor IF-3
Location	Carg_Chr05: 8843457 .. 8845957 (+)
RNA-Seq Expression	Carg11964
Synteny	Carg11964

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCCTTCCTCAGCTCAAACCTCTATGGCTGGGCTCTCCGGCCGCTTCCCTTTCAAATCTATCTCATCTCAATCCTCCGCCACCGCCACCGCCACCACCACCACCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCCACTCCCTTTCGAACCTCAATTTTCCCTCTACCCCTCCCCTCCACCAAATCCAATGCCTTCAGATTCCGCCTTCACAACTCCAACTCTCTGCGTCTCGTTTCCTCTCCAATTCGTACTTCTGTATTTGCTCGATACGGCGGCGCTCCTCGATCTTCAGGACCGGCGGGTTCTAAGCGCTCTGAAGATTCTCTTGCTCTCGATGTTTCCTCCATCAGGTTTGTGCCTTATACATGCAAGAGTTGGCGAATGAATTTTGTTTTTGATTCCGAGTTCTTGTTTGTTTTATTGCGTTTTTTTGTGAGTGATTTGTATAGGTCGAATAATGTGAGGCTTATCGATGAACAGCAGAATATGGTAGGTGTTTTGTTCCGCCTGAATAGCTTTTGCTTGGGGAAAGGCAATTTTTGTCTATCTTCCTGTTTCCATTTACAACATTTCGAAACTTGTATGCGAGGCGCCTTAGTTTGGAAATTTAATCTTCTTGAAATGAATAGGTTGGAATTGTGCCAAAGTCCCAGGCGATTCAAATGGCTGAGGATGCCGAACTCGATTTGGTACGTCGTCTTGTACCGTGTGTTGCTAAAATAATTGTTTGTCTATGAATTCCAAAGAAACCTTGATCCAAACTTTAATGTTATGCGGGGACAAAATGTTGAAATATCATCATTAGCCTGATACGGTCAAGATACCTAAATATTTTAGAAAAAAGATTTAGATATTTTAGGAATAGATTGTATAGCTTTTAGTATAAATACCCTTCCGCTCTATTCCCAAGAAATACAAAGCACAGAGTGCAGCAATAGTTTCTACCGAGTGTCTTGTAATCTCTTCTCGATTGGTGTTAATAAATTGATGTTAATAAACTGTGCGAGTGTTTCCTACAAAAAGTTATGTTCAACACAAAATACATAGCTCATATTTCTTTTGAAACTATGAAATCGAGAATGTGCTTTTTAGCTTCAGGTTGATGTTGATCTTAAATCTTAATTCCTTTTTCACTCTCTGCTTGTTTATTGCCACTTGGGCTTTGGTTTATCTTCAATAAACTGGTCTCTATATAAAACTGAGCATGGAATCAAAAGCTTATGGTAATTATAACTGAAAATTGTAGTTCTAAGTTATAGCAGTTCATCCATAACTAGAAGAATCATCGCATGGTGAATGTTTTTCATTTCAGAGTTGTGTATTAGGCCAACTTTACTGTTTGCTCCGATTTAAAATTGTAATTTCTTTCCATATGGGCGTAAACCGGCAACGAAACTTCTATCTGTCAACACAAGACTTGAAACTTTCTCAGCAATCAGCATTTTAGTTGTCTGCATACTCAAGTTTGGCTGATGCAATTTACGAACCCGTCTCACAGTCTGTGTATTGTTTACTACATGGATAAAGATGGTCATGGACTATTATTTTCTTGGAAACCATGTATGCAACAACCTAAGCCCACTGCTAGCAGATATTGTCCGCTTTGGCTCATTACATATGCCGCCGGCCTCACGGTTTTAAAACACGTCTACTTGGGAGATGTTTATACACTTTTATAAGGAATGTTTCGTTCTCCTCTCCAACTGATGTGTGATCTCACATTGGTTGGAGAGGGGAGCGAAACATTCCTTATAAGAGTGTGAAAACCTCTCCCTAGAGGATGCGTTTTAAAACCTTGAGGGGAAGTCCAAAGAGAATAATATCTGCTAGAGGTAGGCTTGAGCTGTTACAATGTAATTTTGTTGCTTTGTGTTGGATATAGCTCATTCTTTCTATTCCATTCAGGTTGTATTATCCCCTGATGCAGATCCTCCGGTTGTCAGAATAATGGATTACAGGTATGCCACTTTCTCACTCTGTTCTTCCCATTACCTCTCTGCTTGTGGAAAAAGTTGTATTTGCTCAAGTCCAATGCCAATCTGATGAACTTTAATGATTACACTAGTTCTTTAGTAAACCCGTTGAGATGATTTATTCTCAATTAATACTTCACTTTCAATTAAATGTTCTTGAGAAAGTAATATATGAAAATACTAAAGAGATGGAAACATGGTACAATGTAATGGAGAAATAATGAAAAATATGATGATTGTTATGTTTTCACTGGGAGAATTAAAGGGTCACATTCGTTTTTCCTTGTTGAATTTTGTTCCTTTTATGTTGAGATTTTTCTTTTCCTGTCTTTCTCAGTAAGTATAGGTACGATCTACAAAAGAAGAAACGAGAACAACAGAAGAAAAGTGCTGGTGAATCTCTTTCTTAATTGAGTCTGCACAATTTATTTGGTTCACAAACCTTTCAGATTTGGGGAAAGATACTAATAATGTGTGGTTTTGAATGTTAGCAACTCGCATGGATTTGAAGGAGCTTAAAATGGGGTAA

mRNA sequence

TCCCTTCCTCAGCTCAAACCTCTATGGCTGGGCTCTCCGGCCGCTTCCCTTTCAAATCTATCTCATCTCAATCCTCCGCCACCGCCACCGCCACCACCACCACCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCCACTCCCTTTCGAACCTCAATTTTCCCTCTACCCCTCCCCTCCACCAAATCCAATGCCTTCAGATTCCGCCTTCACAACTCCAACTCTCTGCGTCTCGTTTCCTCTCCAATTCGTACTTCTGTATTTGCTCGATACGGCGGCGCTCCTCGATCTTCAGGACCGGCGGGTTCTAAGCGCTCTGAAGATTCTCTTGCTCTCGATGTTTCCTCCATCAGGTCGAATAATGTGAGGCTTATCGATGAACAGCAGAATATGGTTGGAATTGTGCCAAAGTCCCAGGCGATTCAAATGGCTGAGGATGCCGAACTCGATTTGTATAGGTACGATCTACAAAAGAAGAAACGAGAACAACAGAAGAAAAGTGCTGCAACTCGCATGGATTTGAAGGAGCTTAAAATGGGGTAA

Coding sequence (CDS)

ATGGCTGGGCTCTCCGGCCGCTTCCCTTTCAAATCTATCTCATCTCAATCCTCCGCCACCGCCACCGCCACCACCACCACCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCCACTCCCTTTCGAACCTCAATTTTCCCTCTACCCCTCCCCTCCACCAAATCCAATGCCTTCAGATTCCGCCTTCACAACTCCAACTCTCTGCGTCTCGTTTCCTCTCCAATTCGTACTTCTGTATTTGCTCGATACGGCGGCGCTCCTCGATCTTCAGGACCGGCGGGTTCTAAGCGCTCTGAAGATTCTCTTGCTCTCGATGTTTCCTCCATCAGGTCGAATAATGTGAGGCTTATCGATGAACAGCAGAATATGGTTGGAATTGTGCCAAAGTCCCAGGCGATTCAAATGGCTGAGGATGCCGAACTCGATTTGTATAGGTACGATCTACAAAAGAAGAAACGAGAACAACAGAAGAAAAGTGCTGCAACTCGCATGGATTTGAAGGAGCTTAAAATGGGGTAA

Protein sequence

MAGLSGRFPFKSISSQSSATATATTTTSSSSSSSSSATPFRTSIFPLPLPSTKSNAFRFRLHNSNSLRLVSSPIRTSVFARYGGAPRSSGPAGSKRSEDSLALDVSSIRSNNVRLIDEQQNMVGIVPKSQAIQMAEDAELDLYRYDLQKKKREQQKKSAATRMDLKELKMG

Homology

[Close]

BLAST of Carg11964 vs. NCBI nr
Match: KAG7030083.1 (Translation initiation factor IF3-2, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 302.0 bits (772), Expect = 3.3e-78
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MAGLSGRFPFKSISSQSSATATATTTTSSSSSSSSSATPFRTSIFPLPLPSTKSNAFRFR 60
           MAGLSGRFPFKSISSQSSATATATTTTSSSSSSSSSATPFRTSIFPLPLPSTKSNAFRFR
Sbjct: 1   MAGLSGRFPFKSISSQSSATATATTTTSSSSSSSSSATPFRTSIFPLPLPSTKSNAFRFR 60

Query: 61  LHNSNSLRLVSSPIRTSVFARYGGAPRSSGPAGSKRSEDSLALDVSSIRSNNVRLIDEQQ 120
           LHNSNSLRLVSSPIRTSVFARYGGAPRSSGPAGSKRSEDSLALDVSSIRSNNVRLIDEQQ
Sbjct: 61  LHNSNSLRLVSSPIRTSVFARYGGAPRSSGPAGSKRSEDSLALDVSSIRSNNVRLIDEQQ 120

Query: 121 NMVGIVPKSQAIQMAEDAELDLYRYDLQKKKREQQKKSAATRMDLKELKMG 172
           NMVGIVPKSQAIQMAEDAELDLYRYDLQKKKREQQKKSAATRMDLKELKMG
Sbjct: 121 NMVGIVPKSQAIQMAEDAELDLYRYDLQKKKREQQKKSAATRMDLKELKMG 171

[Close]

BLAST of Carg11964 vs. NCBI nr
Match: KAG6599141.1 (Translation initiation factor IF3-2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 282.3 bits (721), Expect = 2.7e-72
Identity = 169/191 (88.48%), Postives = 170/191 (89.01%), Query Frame = 0


Query: 1   MAGLSGRFPFKSISSQSSATATATTTT-SSSSSSSSSATPFRTSIFPLPLPSTKSNAFRF 60
           MAGLSGRFPFKSISSQSSATATATTTT SSSSSSSSSATPFRTSIFPLPLPS+KSNAFRF
Sbjct: 1   MAGLSGRFPFKSISSQSSATATATTTTSSSSSSSSSSATPFRTSIFPLPLPSSKSNAFRF 60

Query: 61  RLHNSNSLRLVSSPIRTSVFARYGGAPRSSGPAGSKRSEDSLALDVSSIRSNNVRLIDEQ 120
           RLHNSNSLRLVSSPIRTSVFARYGGAPRSSGPAGSK SEDSLALDVSSIRSNNVRLIDEQ
Sbjct: 61  RLHNSNSLRLVSSPIRTSVFARYGGAPRSSGPAGSKHSEDSLALDVSSIRSNNVRLIDEQ 120

Query: 121 QNMVGIVPKSQAIQMAEDAELDL-------------------YRYDLQKKKREQQKKSAA 172
           QNMVGIVPKSQAIQMAEDAELDL                   YRYDLQKKKREQQKKSAA
Sbjct: 121 QNMVGIVPKSQAIQMAEDAELDLVVLSPDADPPVVRIMDYSKYRYDLQKKKREQQKKSAA 180

[Close]

BLAST of Carg11964 vs. NCBI nr
Match: XP_022946541.1 (translation initiation factor IF3-4, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 279.3 bits (713), Expect = 2.3e-71
Identity = 166/190 (87.37%), Postives = 167/190 (87.89%), Query Frame = 0


Query: 1   MAGLSGRFPFKSISSQSSATATATTTTSSSSSSSSSATPFRTSIFPLPLPSTKSNAFRFR 60
           MAGLSGRFPFKSISSQSSATATATTTT    SSSSSATPFRTSIFPLPLPS+KSNAFRFR
Sbjct: 1   MAGLSGRFPFKSISSQSSATATATTTT----SSSSSATPFRTSIFPLPLPSSKSNAFRFR 60

Query: 61  LHNSNSLRLVSSPIRTSVFARYGGAPRSSGPAGSKRSEDSLALDVSSIRSNNVRLIDEQQ 120
           LHNSNSLRLVSSPIRTSVFARYGGAPRSSGPAGSKRSEDSLALDVSSIRSNNVRLIDEQQ
Sbjct: 61  LHNSNSLRLVSSPIRTSVFARYGGAPRSSGPAGSKRSEDSLALDVSSIRSNNVRLIDEQQ 120

Query: 121 NMVGIVPKSQAIQMAEDAELDL-------------------YRYDLQKKKREQQKKSAAT 172
           NMVGIVPKSQAIQMAEDAELDL                   YRYDLQKKKREQQKKSAAT
Sbjct: 121 NMVGIVPKSQAIQMAEDAELDLVVLSPDADPPVVRIMDYSKYRYDLQKKKREQQKKSAAT 180

[Close]

BLAST of Carg11964 vs. NCBI nr
Match: XP_023547209.1 (translation initiation factor IF3-4, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 274.2 bits (700), Expect = 7.4e-70
Identity = 163/190 (85.79%), Postives = 164/190 (86.32%), Query Frame = 0


Query: 1   MAGLSGRFPFKSISSQSSATATATTTTSSSSSSSSSATPFRTSIFPLPLPSTKSNAFRFR 60
           MAGLSGRFPFKSISSQSSATATATT      SSSSSATPFRTSIFPLPLPS+KSNAFRFR
Sbjct: 1   MAGLSGRFPFKSISSQSSATATATT------SSSSSATPFRTSIFPLPLPSSKSNAFRFR 60

Query: 61  LHNSNSLRLVSSPIRTSVFARYGGAPRSSGPAGSKRSEDSLALDVSSIRSNNVRLIDEQQ 120
           LHNSNSLRLVSSPIRTSVFARYGGAPRSSGP GSKRSEDSLALDVSSIRSNNVRLIDEQQ
Sbjct: 61  LHNSNSLRLVSSPIRTSVFARYGGAPRSSGPTGSKRSEDSLALDVSSIRSNNVRLIDEQQ 120

Query: 121 NMVGIVPKSQAIQMAEDAELDL-------------------YRYDLQKKKREQQKKSAAT 172
           NMVGIVPKSQAIQMAEDAELDL                   YRYDLQKKKREQQKKSAAT
Sbjct: 121 NMVGIVPKSQAIQMAEDAELDLVVLSPDADPPVVRIMDYSKYRYDLQKKKREQQKKSAAT 180

[Close]

BLAST of Carg11964 vs. NCBI nr
Match: XP_022999741.1 (translation initiation factor IF3-4, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 268.1 bits (684), Expect = 5.3e-68
Identity = 160/190 (84.21%), Postives = 162/190 (85.26%), Query Frame = 0


Query: 1   MAGLSGRFPFKSISSQSSATATATTTTSSSSSSSSSATPFRTSIFPLPLPSTKSNAFRFR 60
           MAGLSGRFPFKSISSQSSATATATT      SSSSSATPFRTSIFPLP PS+KSNA RFR
Sbjct: 1   MAGLSGRFPFKSISSQSSATATATT------SSSSSATPFRTSIFPLPFPSSKSNAVRFR 60

Query: 61  LHNSNSLRLVSSPIRTSVFARYGGAPRSSGPAGSKRSEDSLALDVSSIRSNNVRLIDEQQ 120
           LH+SNSLRLVSSPIRTSVFARYGGAPRSSGP GSKRSEDSLALDVSSIRSNNVRLIDEQQ
Sbjct: 61  LHSSNSLRLVSSPIRTSVFARYGGAPRSSGPTGSKRSEDSLALDVSSIRSNNVRLIDEQQ 120

Query: 121 NMVGIVPKSQAIQMAEDAELDL-------------------YRYDLQKKKREQQKKSAAT 172
           NMVGIVPKSQAIQMAEDAELDL                   YRYDLQKKKREQQKKSAAT
Sbjct: 121 NMVGIVPKSQAIQMAEDAELDLVVLSPDADPPVVRIMDYSKYRYDLQKKKREQQKKSAAT 180

[Close]

BLAST of Carg11964 vs. ExPASy Swiss-Prot
Match: Q94B52 (Translation initiation factor IF3-4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=IF3-4 PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 9.8e-17
Identity = 60/124 (48.39%), Postives = 75/124 (60.48%), Query Frame = 0


Query: 77  SVFARYGGAPRSSGPAGS----------KRSEDSLALDVSSIRSNNVRLIDEQQNMVGIV 136
           ++  RYGG     G  GS          K SED  +LD+S+IRS  VRLID+QQNM+G+V
Sbjct: 54  AITCRYGG----GGGGGSRFPGDRRGRQKESEDDDSLDISAIRSATVRLIDDQQNMIGLV 113

Query: 137 PKSQAIQMAEDAELDL-------------------YRYDLQKKKREQQKKSAATRMDLKE 172
            K +A++ AEDAELDL                   YRY+ QK+K+EQQKK+  TRMDLKE
Sbjct: 114 SKEEAVRRAEDAELDLVILSPDADPPVVRMMDYSKYRYEQQKRKKEQQKKT--TRMDLKE 171

[Close]

BLAST of Carg11964 vs. ExPASy Swiss-Prot
Match: O82234 (Translation initiation factor IF3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=IF3-2 PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.0e-13
Identity = 72/173 (41.62%), Postives = 92/173 (53.18%), Query Frame = 0


Query: 27  TSSSSSSSSSATPFRTSIFPLPLPSTKSNAFRFRLHNS--NSLRLVSSPIR----TSVFA 86
           TSS+   ++  T    ++    L S  S     RL  +  +   L  SP R    T  F 
Sbjct: 5   TSSTVGFNAVFTGITKTVSSHSLFSVDSKLCSLRLSKTELSFTNLTPSPRRAFAVTCRFG 64

Query: 87  RYGGAPRSSGP---AGSKRSEDSLALDVSSIRSNNVRLIDEQQNMVGIVPKSQAIQMAED 146
             GG  R SG       K +E   ALD+SSIRS  VRLID QQNM+G+V K +A++MA+D
Sbjct: 65  GGGGGYRFSGDNRRGRPKEAEIDEALDISSIRSATVRLIDGQQNMLGLVSKDEAVRMADD 124

Query: 147 AELDL-------------------YRYDLQKKKREQQKKSAATRMDLKELKMG 172
           AELDL                   YRY+ QK+K++QQKK+  TRMDLKELKMG
Sbjct: 125 AELDLVILSPDADPPVVKMMDYSKYRYEQQKRKKDQQKKT--TRMDLKELKMG 175

[Close]

BLAST of Carg11964 vs. ExPASy TrEMBL
Match: A0A6J1G3Y5 (Translation initiation factor IF-3 OS=Cucurbita moschata OX=3662 GN=LOC111450575 PE=3 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 1.1e-71
Identity = 166/190 (87.37%), Postives = 167/190 (87.89%), Query Frame = 0


Query: 1   MAGLSGRFPFKSISSQSSATATATTTTSSSSSSSSSATPFRTSIFPLPLPSTKSNAFRFR 60
           MAGLSGRFPFKSISSQSSATATATTTT    SSSSSATPFRTSIFPLPLPS+KSNAFRFR
Sbjct: 1   MAGLSGRFPFKSISSQSSATATATTTT----SSSSSATPFRTSIFPLPLPSSKSNAFRFR 60

Query: 61  LHNSNSLRLVSSPIRTSVFARYGGAPRSSGPAGSKRSEDSLALDVSSIRSNNVRLIDEQQ 120
           LHNSNSLRLVSSPIRTSVFARYGGAPRSSGPAGSKRSEDSLALDVSSIRSNNVRLIDEQQ
Sbjct: 61  LHNSNSLRLVSSPIRTSVFARYGGAPRSSGPAGSKRSEDSLALDVSSIRSNNVRLIDEQQ 120

Query: 121 NMVGIVPKSQAIQMAEDAELDL-------------------YRYDLQKKKREQQKKSAAT 172
           NMVGIVPKSQAIQMAEDAELDL                   YRYDLQKKKREQQKKSAAT
Sbjct: 121 NMVGIVPKSQAIQMAEDAELDLVVLSPDADPPVVRIMDYSKYRYDLQKKKREQQKKSAAT 180

[Close]

BLAST of Carg11964 vs. ExPASy TrEMBL
Match: A0A6J1KDY9 (Translation initiation factor IF-3 OS=Cucurbita maxima OX=3661 GN=LOC111493999 PE=3 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 2.6e-68
Identity = 160/190 (84.21%), Postives = 162/190 (85.26%), Query Frame = 0


Query: 1   MAGLSGRFPFKSISSQSSATATATTTTSSSSSSSSSATPFRTSIFPLPLPSTKSNAFRFR 60
           MAGLSGRFPFKSISSQSSATATATT      SSSSSATPFRTSIFPLP PS+KSNA RFR
Sbjct: 1   MAGLSGRFPFKSISSQSSATATATT------SSSSSATPFRTSIFPLPFPSSKSNAVRFR 60

Query: 61  LHNSNSLRLVSSPIRTSVFARYGGAPRSSGPAGSKRSEDSLALDVSSIRSNNVRLIDEQQ 120
           LH+SNSLRLVSSPIRTSVFARYGGAPRSSGP GSKRSEDSLALDVSSIRSNNVRLIDEQQ
Sbjct: 61  LHSSNSLRLVSSPIRTSVFARYGGAPRSSGPTGSKRSEDSLALDVSSIRSNNVRLIDEQQ 120

Query: 121 NMVGIVPKSQAIQMAEDAELDL-------------------YRYDLQKKKREQQKKSAAT 172
           NMVGIVPKSQAIQMAEDAELDL                   YRYDLQKKKREQQKKSAAT
Sbjct: 121 NMVGIVPKSQAIQMAEDAELDLVVLSPDADPPVVRIMDYSKYRYDLQKKKREQQKKSAAT 180

[Close]

BLAST of Carg11964 vs. ExPASy TrEMBL
Match: A0A6J1DYM5 (Translation initiation factor IF-3 OS=Momordica charantia OX=3673 GN=LOC111024717 PE=3 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 3.0e-53
Identity = 136/191 (71.20%), Postives = 151/191 (79.06%), Query Frame = 0


Query: 1   MAGLSGRFPFKSISSQSSATATATTTTSSSSSSSSSATPFRTSIFPLPLPSTKSNAFRFR 60
           MAGL+ RFPFK + SQSS  AT ++  +SSSSS+++A PFRTSI PLPL S++SNAF FR
Sbjct: 1   MAGLTSRFPFKPLLSQSS--ATTSSAAASSSSSAAAAPPFRTSISPLPLSSSESNAFGFR 60

Query: 61  LHNSNSLRL-VSSPIRTSVFARYGGAPRSSGPAGSKRSEDSLALDVSSIRSNNVRLIDEQ 120
           LHNSNSLRL VSSPIR SVFAR+GGAPRSSGPA SKRS+D   LDVS+IRSNNVRLID Q
Sbjct: 61  LHNSNSLRLIVSSPIRRSVFARFGGAPRSSGPADSKRSDDDFGLDVSAIRSNNVRLIDAQ 120

Query: 121 QNMVGIVPKSQAIQMAEDAELDL-------------------YRYDLQKKKREQQKKSAA 172
           QNMVGIV K+QAIQMAEDAELDL                   YRY+LQKKKR QQKKSAA
Sbjct: 121 QNMVGIVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAA 180

[Close]

BLAST of Carg11964 vs. ExPASy TrEMBL
Match: A0A0A0LH34 (Translation initiation factor IF-3 OS=Cucumis sativus OX=3659 GN=Csa_2G036070 PE=3 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 4.1e-50
Identity = 131/197 (66.50%), Postives = 149/197 (75.63%), Query Frame = 0


Query: 1   MAGLSGRFPFKSISSQSSATATATTTTSSS--SSSSSSATPFRTSIFPLPLPSTKSNAFR 60
           MAGLSG FPFKS+ SQSSA AT T+++S++   +SSSS TPFRTS   LP+ S+ SNAF+
Sbjct: 1   MAGLSGSFPFKSLLSQSSAAATTTSSSSAAPPPTSSSSTTPFRTSFPSLPISSSNSNAFK 60

Query: 61  FRLHNSNSLRL-----VSSPIRTSVFARYGGAPRSSGPAGSKRSEDSLALDVSSIRSNNV 120
           FRLH SNSLRL     VSSPIRTSVFAR GGAPRSSGP  SKRS D + LD+S+I+S NV
Sbjct: 61  FRLHKSNSLRLLFSSPVSSPIRTSVFARLGGAPRSSGPPDSKRSNDEIGLDISAIKSINV 120

Query: 121 RLIDEQQNMVGIVPKSQAIQMAEDAELDL-------------------YRYDLQKKKREQ 172
           RLID +QNMVG+V K+QAIQMAEDAELDL                   YRY+LQKKKR Q
Sbjct: 121 RLIDAEQNMVGVVSKAQAIQMAEDAELDLVVVSPDADPPVVRIMDYNKYRYELQKKKRGQ 180

[Close]

BLAST of Carg11964 vs. ExPASy TrEMBL
Match: A0A1S3BV82 (Translation initiation factor IF-3 OS=Cucumis melo OX=3656 GN=LOC103493630 PE=3 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 2.7e-49
Identity = 133/196 (67.86%), Postives = 147/196 (75.00%), Query Frame = 0


Query: 1   MAGLSGRFPFKSISSQSSATATATTTTSSSSSSSSSATPFRTSIFPLPLPST-KSNAFRF 60
           MAGLSG FPFKS+ SQSSA +T TT+ +++ +SSSS TPFRTS   LP+ S+  SNAF+ 
Sbjct: 1   MAGLSGSFPFKSLLSQSSAAST-TTSPAAAPTSSSSTTPFRTSTPSLPISSSFNSNAFKL 60

Query: 61  RLHNSNSLRL-----VSSPIRTSVFARYGGAPRSSGPAGSKRSEDSLALDVSSIRSNNVR 120
           RLH SNSLRL     VSSPIRTSVFAR GGAPRSSGP  SKRS D   LDVS+IRSNNVR
Sbjct: 61  RLHKSNSLRLVFSFPVSSPIRTSVFARLGGAPRSSGPPDSKRSNDEFGLDVSAIRSNNVR 120

Query: 121 LIDEQQNMVGIVPKSQAIQMAEDAELDL-------------------YRYDLQKKKREQQ 172
           LID QQNMVG+V K+QAIQMAEDAELDL                   YRY+LQKKKR QQ
Sbjct: 121 LIDAQQNMVGVVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRGQQ 180

[Close]

BLAST of Carg11964 vs. TAIR 10
Match: AT4G30690.1 (Translation initiation factor 3 protein )

HSP 1 Score: 88.2 bits (217), Expect = 7.0e-18
Identity = 60/124 (48.39%), Postives = 75/124 (60.48%), Query Frame = 0


Query: 77  SVFARYGGAPRSSGPAGS----------KRSEDSLALDVSSIRSNNVRLIDEQQNMVGIV 136
           ++  RYGG     G  GS          K SED  +LD+S+IRS  VRLID+QQNM+G+V
Sbjct: 54  AITCRYGG----GGGGGSRFPGDRRGRQKESEDDDSLDISAIRSATVRLIDDQQNMIGLV 113

Query: 137 PKSQAIQMAEDAELDL-------------------YRYDLQKKKREQQKKSAATRMDLKE 172
            K +A++ AEDAELDL                   YRY+ QK+K+EQQKK+  TRMDLKE
Sbjct: 114 SKEEAVRRAEDAELDLVILSPDADPPVVRMMDYSKYRYEQQKRKKEQQKKT--TRMDLKE 171

[Close]

BLAST of Carg11964 vs. TAIR 10
Match: AT2G24060.1 (Translation initiation factor 3 protein )

HSP 1 Score: 76.6 bits (187), Expect = 2.1e-14
Identity = 72/173 (41.62%), Postives = 92/173 (53.18%), Query Frame = 0


Query: 27  TSSSSSSSSSATPFRTSIFPLPLPSTKSNAFRFRLHNS--NSLRLVSSPIR----TSVFA 86
           TSS+   ++  T    ++    L S  S     RL  +  +   L  SP R    T  F 
Sbjct: 5   TSSTVGFNAVFTGITKTVSSHSLFSVDSKLCSLRLSKTELSFTNLTPSPRRAFAVTCRFG 64

Query: 87  RYGGAPRSSGP---AGSKRSEDSLALDVSSIRSNNVRLIDEQQNMVGIVPKSQAIQMAED 146
             GG  R SG       K +E   ALD+SSIRS  VRLID QQNM+G+V K +A++MA+D
Sbjct: 65  GGGGGYRFSGDNRRGRPKEAEIDEALDISSIRSATVRLIDGQQNMLGLVSKDEAVRMADD 124

Query: 147 AELDL-------------------YRYDLQKKKREQQKKSAATRMDLKELKMG 172
           AELDL                   YRY+ QK+K++QQKK+  TRMDLKELKMG
Sbjct: 125 AELDLVILSPDADPPVVKMMDYSKYRYEQQKRKKDQQKKT--TRMDLKELKMG 175

[Close]

BLAST of Carg11964 vs. TAIR 10
Match: AT4G30690.2 (Translation initiation factor 3 protein )

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-10
Identity = 38/76 (50.00%), Postives = 49/76 (64.47%), Query Frame = 0


Query: 77  SVFARYGGAPRSSGPAGS----------KRSEDSLALDVSSIRSNNVRLIDEQQNMVGIV 136
           ++  RYGG     G  GS          K SED  +LD+S+IRS  VRLID+QQNM+G+V
Sbjct: 54  AITCRYGG----GGGGGSRFPGDRRGRQKESEDDDSLDISAIRSATVRLIDDQQNMIGLV 113

Query: 137 PKSQAIQMAEDAELDL 143
            K +A++ AEDAELDL
Sbjct: 114 SKEEAVRRAEDAELDL 125

The following BLAST results are available for this feature:

BLAST of Carg11964 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7030083.1	3.3e-78	100.00	Translation initiation factor IF3-2, chloroplastic [Cucurbita argyrosperma subsp...	[more]
KAG6599141.1	2.7e-72	88.48	Translation initiation factor IF3-2, chloroplastic, partial [Cucurbita argyrospe...	[more]
XP_022946541.1	2.3e-71	87.37	translation initiation factor IF3-4, chloroplastic-like [Cucurbita moschata]	[more]
XP_023547209.1	7.4e-70	85.79	translation initiation factor IF3-4, chloroplastic-like [Cucurbita pepo subsp. p...	[more]
XP_022999741.1	5.3e-68	84.21	translation initiation factor IF3-4, chloroplastic-like [Cucurbita maxima]	[more]

BLAST of Carg11964 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94B52	9.8e-17	48.39	Translation initiation factor IF3-4, chloroplastic OS=Arabidopsis thaliana OX=37...	[more]
O82234	3.0e-13	41.62	Translation initiation factor IF3-2, chloroplastic OS=Arabidopsis thaliana OX=37...	[more]

BLAST of Carg11964 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G3Y5	1.1e-71	87.37	Translation initiation factor IF-3 OS=Cucurbita moschata OX=3662 GN=LOC111450575...	[more]
A0A6J1KDY9	2.6e-68	84.21	Translation initiation factor IF-3 OS=Cucurbita maxima OX=3661 GN=LOC111493999 P...	[more]
A0A6J1DYM5	3.0e-53	71.20	Translation initiation factor IF-3 OS=Momordica charantia OX=3673 GN=LOC11102471...	[more]
A0A0A0LH34	4.1e-50	66.50	Translation initiation factor IF-3 OS=Cucumis sativus OX=3659 GN=Csa_2G036070 PE...	[more]
A0A1S3BV82	2.7e-49	67.86	Translation initiation factor IF-3 OS=Cucumis melo OX=3656 GN=LOC103493630 PE=3 ...	[more]

BLAST of Carg11964 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30690.1	7.0e-18	48.39	Translation initiation factor 3 protein	[more]
AT2G24060.1	2.1e-14	41.62	Translation initiation factor 3 protein	[more]
AT4G30690.2	1.4e-10	50.00	Translation initiation factor 3 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019814	Translation initiation factor 3, N-terminal	PFAM	PF05198	IF3_N	coord: 107..142 e-value: 6.0E-8 score: 32.9
IPR036787	Translation initiation factor 3 (IF-3), N-terminal domain superfamily	GENE3D	3.10.20.80		coord: 106..143 e-value: 3.0E-9 score: 38.8
IPR036787	Translation initiation factor 3 (IF-3), N-terminal domain superfamily	SUPERFAMILY	54364	Translation initiation factor IF3, N-terminal domain	coord: 107..156
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 151..171
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..40
None	No IPR available	PANTHER	PTHR10938:SF6	TRANSLATION INITIATION FACTOR IF-3	coord: 71..171
IPR001288	Translation initiation factor 3	PANTHER	PTHR10938	TRANSLATION INITIATION FACTOR IF-3	coord: 71..171

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11964-RA	Carg11964-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032790	ribosome disassembly
biological_process	GO:0006413	translational initiation
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0043022	ribosome binding
molecular_function	GO:0003743	translation initiation factor activity