Carg11949 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg11949
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	UDP-glucuronate 4-epimerase 4
Location	Carg_Chr05: 8727871 .. 8728504 (+)
RNA-Seq Expression	Carg11949
Synteny	Carg11949

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAATCCCAATTCGTATGTTCATAGCAACATCGCCGGTTTAGTTACGCTCCTTGAGGCATGTAAATCGGCTAATCCACAACCGGCTGTGGTCTGGGCTTCTTCCAGTTCGGTTTACGGTTTGAACGAGAAAGTCCCCTTTTCCGAATCGGACCGAACCGACCAACCGGCGAGTCTACTACGCAGCCACAAAAAAAGCCGGAGAGGAAATCACTCACACTTATAATCACATCTATGGTTTGTCGATAACCGGGTTGAGATTCTTCACGGTTTACGGTCCATGGGGCCGACCGGACATGGCGTATTTTTCATTCACGAGGAATATTCTTCAAGGAAAACCGATTACGGTTTTTCGTGGGAAGAACCGGGTTGATTTAGCCAGGGATTTCACTTACATTGATGATATTGTGAAAGGGTGTTTGGGGTCGTTGGATACATCAGGGAAGAGCACCGGTTCAGGTGAAGAAAACCGGACCGGCGGCGTAGAGGATATTCAACTTGGGGAATACATCGCCGGTGACGGTGCCGACGTTGGTGAGTATATTGGAGAGGCATTTGAAGGTGAAGGCAAAAGAAAATGTGGTGGAAATGCCTGGAAACGGCGACGTTCCGTTTACTCATGCGAATATTAG

mRNA sequence

ATGGAGAATCCCAATTCGTATGTTCATAGCAACATCGCCGGTTTAGTTACGCTCCTTGAGGCATGTAAATCGGCTAATCCACAACCGGCTGTGGTCTGGGCTTCTTCCAGTTCGGTTTACGCCACAAAAAAAGCCGGAGAGGAAATCACTCACACTTATAATCACATCTATGGTTTGTCGATAACCGGGTTGAGATTCTTCACGGTTTACGGTCCATGGGGCCGACCGGACATGGCGTATTTTTCATTCACGAGGAATATTCTTCAAGGAAAACCGATTACGGTTTTTCGTGGGAAGAACCGGGTTGATTTAGCCAGGGATTTCACTTACATTGATGATATTGTGAAAGGGTGTTTGGGGTCGTTGGATACATCAGGGAAGAGCACCGGTTCAGGTGAAGAAAACCGGACCGGCGGCGTAGAGGATATTCAACTTGGGGAATACATCGCCGGTGACGGTGCCGACGTTGGTGAGTATATTGGAGAGGCATTTGAAGGTGAAGGCAAAAGAAAATGTGGTGGAAATGCCTGGAAACGGCGACGTTCCGTTTACTCATGCGAATATTAG

Coding sequence (CDS)

ATGGAGAATCCCAATTCGTATGTTCATAGCAACATCGCCGGTTTAGTTACGCTCCTTGAGGCATGTAAATCGGCTAATCCACAACCGGCTGTGGTCTGGGCTTCTTCCAGTTCGGTTTACGCCACAAAAAAAGCCGGAGAGGAAATCACTCACACTTATAATCACATCTATGGTTTGTCGATAACCGGGTTGAGATTCTTCACGGTTTACGGTCCATGGGGCCGACCGGACATGGCGTATTTTTCATTCACGAGGAATATTCTTCAAGGAAAACCGATTACGGTTTTTCGTGGGAAGAACCGGGTTGATTTAGCCAGGGATTTCACTTACATTGATGATATTGTGAAAGGGTGTTTGGGGTCGTTGGATACATCAGGGAAGAGCACCGGTTCAGGTGAAGAAAACCGGACCGGCGGCGTAGAGGATATTCAACTTGGGGAATACATCGCCGGTGACGGTGCCGACGTTGGTGAGTATATTGGAGAGGCATTTGAAGGTGAAGGCAAAAGAAAATGTGGTGGAAATGCCTGGAAACGGCGACGTTCCGTTTACTCATGCGAATATTAG

Protein sequence

MENPNSYVHSNIAGLVTLLEACKSANPQPAVVWASSSSVYATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVFRGKNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSGEENRTGGVEDIQLGEYIAGDGADVGEYIGEAFEGEGKRKCGGNAWKRRRSVYSCEY

Homology

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BLAST of Carg11949 vs. NCBI nr
Match: KAG7030068.1 (UDP-glucuronate 4-epimerase 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 389.0 bits (998), Expect = 2.3e-104
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0


Query: 1   MENPNSYVHSNIAGLVTLLEACKSANPQPAVVWASSSSVYATKKAGEEITHTYNHIYGLS 60
           MENPNSYVHSNIAGLVTLLEACKSANPQPAVVWASSSSVYATKKAGEEITHTYNHIYGLS
Sbjct: 1   MENPNSYVHSNIAGLVTLLEACKSANPQPAVVWASSSSVYATKKAGEEITHTYNHIYGLS 60

Query: 61  ITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVFRGKNRVDLARDFTYIDDIVKGCLG 120
           ITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVFRGKNRVDLARDFTYIDDIVKGCLG
Sbjct: 61  ITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVFRGKNRVDLARDFTYIDDIVKGCLG 120

Query: 121 SLDTSGKSTGSGEENRTGGVEDIQLGEYIAGDGADVGEYIGEAFEGEGKRKCGGNAWKRR 180
           SLDTSGKSTGSGEENRTGGVEDIQLGEYIAGDGADVGEYIGEAFEGEGKRKCGGNAWKRR
Sbjct: 121 SLDTSGKSTGSGEENRTGGVEDIQLGEYIAGDGADVGEYIGEAFEGEGKRKCGGNAWKRR 180

Query: 181 RSVYSCEY 189
           RSVYSCEY
Sbjct: 181 RSVYSCEY 188

[Close]

BLAST of Carg11949 vs. NCBI nr
Match: XP_023547336.1 (UDP-glucuronate 4-epimerase 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 261.5 bits (667), Expect = 5.4e-66
Identity = 132/154 (85.71%), Postives = 132/154 (85.71%), Query Frame = 0


Query: 1   MENPNSYVHSNIAGLVTLLEACKSANPQPAVVWASSSSVY-------------------- 60
           MENPNSYVHSNIAGLVTLLEACKSANPQPAVVWASSSSVY                    
Sbjct: 182 MENPNSYVHSNIAGLVTLLEACKSANPQPAVVWASSSSVYGLNEKVPFSESDRTDQPASL 241

Query: 61  --ATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVFRG 120
             ATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVFRG
Sbjct: 242 YAATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVFRG 301

Query: 121 KNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSG 133
           KNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSG
Sbjct: 302 KNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSG 335

[Close]

BLAST of Carg11949 vs. NCBI nr
Match: XP_022999693.1 (UDP-glucuronate 4-epimerase 1 [Cucurbita maxima])

HSP 1 Score: 261.5 bits (667), Expect = 5.4e-66
Identity = 132/154 (85.71%), Postives = 132/154 (85.71%), Query Frame = 0


Query: 1   MENPNSYVHSNIAGLVTLLEACKSANPQPAVVWASSSSVY-------------------- 60
           MENPNSYVHSNIAGLVTLLEACKSANPQPAVVWASSSSVY                    
Sbjct: 182 MENPNSYVHSNIAGLVTLLEACKSANPQPAVVWASSSSVYGLNEKVPFSESDRTDQPASL 241

Query: 61  --ATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVFRG 120
             ATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVFRG
Sbjct: 242 YAATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVFRG 301

Query: 121 KNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSG 133
           KNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSG
Sbjct: 302 KNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSG 335

[Close]

BLAST of Carg11949 vs. NCBI nr
Match: XP_008465609.1 (PREDICTED: UDP-glucuronate 4-epimerase 1 [Cucumis melo] >KAA0039739.1 UDP-glucuronate 4-epimerase 1 [Cucumis melo var. makuwa] >TYJ96386.1 UDP-glucuronate 4-epimerase 1 [Cucumis melo var. makuwa])

HSP 1 Score: 261.5 bits (667), Expect = 5.4e-66
Identity = 132/154 (85.71%), Postives = 132/154 (85.71%), Query Frame = 0


Query: 1   MENPNSYVHSNIAGLVTLLEACKSANPQPAVVWASSSSVY-------------------- 60
           MENPNSYVHSNIAGLVTLLEACKSANPQPAVVWASSSSVY                    
Sbjct: 182 MENPNSYVHSNIAGLVTLLEACKSANPQPAVVWASSSSVYGLNEKVPFSESDRTDQPASL 241

Query: 61  --ATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVFRG 120
             ATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVFRG
Sbjct: 242 YAATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVFRG 301

Query: 121 KNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSG 133
           KNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSG
Sbjct: 302 KNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSG 335

[Close]

BLAST of Carg11949 vs. NCBI nr
Match: KAE8651646.1 (hypothetical protein Csa_021341 [Cucumis sativus])

HSP 1 Score: 261.5 bits (667), Expect = 5.4e-66
Identity = 132/154 (85.71%), Postives = 132/154 (85.71%), Query Frame = 0


Query: 1   MENPNSYVHSNIAGLVTLLEACKSANPQPAVVWASSSSVY-------------------- 60
           MENPNSYVHSNIAGLVTLLEACKSANPQPAVVWASSSSVY                    
Sbjct: 182 MENPNSYVHSNIAGLVTLLEACKSANPQPAVVWASSSSVYGLNEKVPFSESDRTDQPASL 241

Query: 61  --ATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVFRG 120
             ATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVFRG
Sbjct: 242 YAATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVFRG 301

Query: 121 KNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSG 133
           KNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSG
Sbjct: 302 KNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSG 335

[Close]

BLAST of Carg11949 vs. ExPASy Swiss-Prot
Match: Q9M0B6 (UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thaliana OX=3702 GN=GAE1 PE=1 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 2.1e-65
Identity = 123/158 (77.85%), Postives = 131/158 (82.91%), Query Frame = 0


Query: 1   MENPNSYVHSNIAGLVTLLEACKSANPQPAVVWASSSSVY-------------------- 60
           +ENP SYVHSNIAGLV LLE CK+ANPQPA+VWASSSSVY                    
Sbjct: 179 LENPQSYVHSNIAGLVNLLEICKAANPQPAIVWASSSSVYGLNEKVPFSESDRTDQPASL 238

Query: 61  --ATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVFRG 120
             ATKKAGEEITHTYNHIYGL+ITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPIT++RG
Sbjct: 239 YAATKKAGEEITHTYNHIYGLAITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITIYRG 298

Query: 121 KNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSGEENR 137
           KNRVDLARDFTYIDDIVKGCLGSLD+SGKSTGSG + R
Sbjct: 299 KNRVDLARDFTYIDDIVKGCLGSLDSSGKSTGSGGKKR 336

[Close]

BLAST of Carg11949 vs. ExPASy Swiss-Prot
Match: Q9LPC1 (UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thaliana OX=3702 GN=GAE2 PE=2 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.6e-57
Identity = 111/158 (70.25%), Postives = 121/158 (76.58%), Query Frame = 0


Query: 1   MENPNSYVHSNIAGLVTLLEACKSANPQPAVVWASSSSVY-------------------- 60
           MENP SYVHSNIAG V LLE CKSANPQPA+VWASSSSVY                    
Sbjct: 183 MENPGSYVHSNIAGFVNLLEVCKSANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASL 242

Query: 61  --ATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVFRG 120
             ATKKAGEEI HTYNHIYGLS+TGLRFFTVYGPWGRPDMAYF FTR+IL+GK I++F G
Sbjct: 243 YAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGKAISIFEG 302

Query: 121 KNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSGEENR 137
            N   +ARDFTYIDDIVKGCLG+LDT+ KSTGSG + R
Sbjct: 303 ANHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKR 340

[Close]

BLAST of Carg11949 vs. ExPASy Swiss-Prot
Match: O81312 (UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thaliana OX=3702 GN=GAE3 PE=2 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.6e-57
Identity = 111/158 (70.25%), Postives = 122/158 (77.22%), Query Frame = 0


Query: 1   MENPNSYVHSNIAGLVTLLEACKSANPQPAVVWASSSSVY-------------------- 60
           MENP+SYVHSNIAG V LLE CKSANPQPA+VWASSSSVY                    
Sbjct: 182 MENPSSYVHSNIAGFVNLLEVCKSANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASL 241

Query: 61  --ATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVFRG 120
             ATKKAGEEI HTYNHIYGLS+TGLRFFTVYGPWGRPDMAYF FTR+IL+GK I++F G
Sbjct: 242 YAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGKAISIFEG 301

Query: 121 KNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSGEENR 137
            N   +ARDFTYIDDIVKGCLG+LDT+ KSTGSG + R
Sbjct: 302 VNHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKR 339

[Close]

BLAST of Carg11949 vs. ExPASy Swiss-Prot
Match: O22141 (UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thaliana OX=3702 GN=GAE4 PE=1 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.6e-55
Identity = 107/158 (67.72%), Postives = 119/158 (75.32%), Query Frame = 0


Query: 1   MENPNSYVHSNIAGLVTLLEACKSANPQPAVVWASSSSVY-------------------- 60
           MENP+SYVHSNIAG V LLE CKS NPQPA+VWASSSSVY                    
Sbjct: 188 MENPSSYVHSNIAGFVNLLEICKSVNPQPAIVWASSSSVYGLNTKVPFSEKDKTDQPASL 247

Query: 61  --ATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVFRG 120
             ATKKAGEEI HTYNHIYGLS+TGLRFFTVYGPWGRPDMAYF FT++IL+GK I++F  
Sbjct: 248 YAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILKGKSISIFES 307

Query: 121 KNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSGEENR 137
            N   +ARDFTYIDDIVKGCL +LDT+ KSTGSG + R
Sbjct: 308 ANHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKR 345

[Close]

BLAST of Carg11949 vs. ExPASy Swiss-Prot
Match: Q9STI6 (UDP-glucuronate 4-epimerase 5 OS=Arabidopsis thaliana OX=3702 GN=GAE5 PE=2 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 2.5e-53
Identity = 105/158 (66.46%), Postives = 119/158 (75.32%), Query Frame = 0


Query: 1   MENPNSYVHSNIAGLVTLLEACKSANPQPAVVWASSSSVY-------------------- 60
           M+NP SYV+SNIAG V LLE  KSANPQPA+VWASSSSVY                    
Sbjct: 187 MQNPGSYVNSNIAGFVNLLEVSKSANPQPAIVWASSSSVYGLNSKVPFSEKDRTDQPASL 246

Query: 61  --ATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVFRG 120
             ATKKAGE I HTYNHIYGLS+TGLRFFTVYGPWGRPDMAYF FT++IL+GK ITVF  
Sbjct: 247 YAATKKAGEGIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILKGKTITVFES 306

Query: 121 KNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSGEENR 137
            ++  +ARDFTYIDDIVKGCLG+LDT+ KSTGSG + +
Sbjct: 307 PDKGSVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKK 344

[Close]

BLAST of Carg11949 vs. ExPASy TrEMBL
Match: A0A5A7TES1 (UDP-glucuronate 4-epimerase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G00120 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.6e-66
Identity = 132/154 (85.71%), Postives = 132/154 (85.71%), Query Frame = 0


Query: 1   MENPNSYVHSNIAGLVTLLEACKSANPQPAVVWASSSSVY-------------------- 60
           MENPNSYVHSNIAGLVTLLEACKSANPQPAVVWASSSSVY                    
Sbjct: 182 MENPNSYVHSNIAGLVTLLEACKSANPQPAVVWASSSSVYGLNEKVPFSESDRTDQPASL 241

Query: 61  --ATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVFRG 120
             ATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVFRG
Sbjct: 242 YAATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVFRG 301

Query: 121 KNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSG 133
           KNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSG
Sbjct: 302 KNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSG 335

[Close]

BLAST of Carg11949 vs. ExPASy TrEMBL
Match: A0A6J1KKG5 (UDP-glucuronate 4-epimerase 1 OS=Cucurbita maxima OX=3661 GN=LOC111493970 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.6e-66
Identity = 132/154 (85.71%), Postives = 132/154 (85.71%), Query Frame = 0


Query: 1   MENPNSYVHSNIAGLVTLLEACKSANPQPAVVWASSSSVY-------------------- 60
           MENPNSYVHSNIAGLVTLLEACKSANPQPAVVWASSSSVY                    
Sbjct: 182 MENPNSYVHSNIAGLVTLLEACKSANPQPAVVWASSSSVYGLNEKVPFSESDRTDQPASL 241

Query: 61  --ATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVFRG 120
             ATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVFRG
Sbjct: 242 YAATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVFRG 301

Query: 121 KNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSG 133
           KNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSG
Sbjct: 302 KNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSG 335

[Close]

BLAST of Carg11949 vs. ExPASy TrEMBL
Match: A0A0A0LM85 (UDP-glucuronate 5-epimerase OS=Cucumis sativus OX=3659 GN=Csa_2G037230 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.6e-66
Identity = 132/154 (85.71%), Postives = 132/154 (85.71%), Query Frame = 0


Query: 1   MENPNSYVHSNIAGLVTLLEACKSANPQPAVVWASSSSVY-------------------- 60
           MENPNSYVHSNIAGLVTLLEACKSANPQPAVVWASSSSVY                    
Sbjct: 182 MENPNSYVHSNIAGLVTLLEACKSANPQPAVVWASSSSVYGLNEKVPFSESDRTDQPASL 241

Query: 61  --ATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVFRG 120
             ATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVFRG
Sbjct: 242 YAATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVFRG 301

Query: 121 KNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSG 133
           KNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSG
Sbjct: 302 KNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSG 335

[Close]

BLAST of Carg11949 vs. ExPASy TrEMBL
Match: A0A6J1G3Z3 (UDP-glucuronate 4-epimerase 1 OS=Cucurbita moschata OX=3662 GN=LOC111450569 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.6e-66
Identity = 132/154 (85.71%), Postives = 132/154 (85.71%), Query Frame = 0


Query: 1   MENPNSYVHSNIAGLVTLLEACKSANPQPAVVWASSSSVY-------------------- 60
           MENPNSYVHSNIAGLVTLLEACKSANPQPAVVWASSSSVY                    
Sbjct: 182 MENPNSYVHSNIAGLVTLLEACKSANPQPAVVWASSSSVYGLNEKVPFSESDRTDQPASL 241

Query: 61  --ATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVFRG 120
             ATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVFRG
Sbjct: 242 YAATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVFRG 301

Query: 121 KNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSG 133
           KNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSG
Sbjct: 302 KNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSG 335

[Close]

BLAST of Carg11949 vs. ExPASy TrEMBL
Match: A0A1S3CP94 (UDP-glucuronate 4-epimerase 1 OS=Cucumis melo OX=3656 GN=LOC103503248 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.6e-66
Identity = 132/154 (85.71%), Postives = 132/154 (85.71%), Query Frame = 0


Query: 1   MENPNSYVHSNIAGLVTLLEACKSANPQPAVVWASSSSVY-------------------- 60
           MENPNSYVHSNIAGLVTLLEACKSANPQPAVVWASSSSVY                    
Sbjct: 182 MENPNSYVHSNIAGLVTLLEACKSANPQPAVVWASSSSVYGLNEKVPFSESDRTDQPASL 241

Query: 61  --ATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVFRG 120
             ATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVFRG
Sbjct: 242 YAATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVFRG 301

Query: 121 KNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSG 133
           KNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSG
Sbjct: 302 KNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSG 335

[Close]

BLAST of Carg11949 vs. TAIR 10
Match: AT4G30440.1 (UDP-D-glucuronate 4-epimerase 1 )

HSP 1 Score: 250.0 bits (637), Expect = 1.5e-66
Identity = 123/158 (77.85%), Postives = 131/158 (82.91%), Query Frame = 0


Query: 1   MENPNSYVHSNIAGLVTLLEACKSANPQPAVVWASSSSVY-------------------- 60
           +ENP SYVHSNIAGLV LLE CK+ANPQPA+VWASSSSVY                    
Sbjct: 179 LENPQSYVHSNIAGLVNLLEICKAANPQPAIVWASSSSVYGLNEKVPFSESDRTDQPASL 238

Query: 61  --ATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVFRG 120
             ATKKAGEEITHTYNHIYGL+ITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPIT++RG
Sbjct: 239 YAATKKAGEEITHTYNHIYGLAITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITIYRG 298

Query: 121 KNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSGEENR 137
           KNRVDLARDFTYIDDIVKGCLGSLD+SGKSTGSG + R
Sbjct: 299 KNRVDLARDFTYIDDIVKGCLGSLDSSGKSTGSGGKKR 336

[Close]

BLAST of Carg11949 vs. TAIR 10
Match: AT1G02000.1 (UDP-D-glucuronate 4-epimerase 2 )

HSP 1 Score: 223.8 bits (569), Expect = 1.2e-58
Identity = 111/158 (70.25%), Postives = 121/158 (76.58%), Query Frame = 0


Query: 1   MENPNSYVHSNIAGLVTLLEACKSANPQPAVVWASSSSVY-------------------- 60
           MENP SYVHSNIAG V LLE CKSANPQPA+VWASSSSVY                    
Sbjct: 183 MENPGSYVHSNIAGFVNLLEVCKSANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASL 242

Query: 61  --ATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVFRG 120
             ATKKAGEEI HTYNHIYGLS+TGLRFFTVYGPWGRPDMAYF FTR+IL+GK I++F G
Sbjct: 243 YAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGKAISIFEG 302

Query: 121 KNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSGEENR 137
            N   +ARDFTYIDDIVKGCLG+LDT+ KSTGSG + R
Sbjct: 303 ANHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKR 340

[Close]

BLAST of Carg11949 vs. TAIR 10
Match: AT4G00110.1 (UDP-D-glucuronate 4-epimerase 3 )

HSP 1 Score: 223.8 bits (569), Expect = 1.2e-58
Identity = 111/158 (70.25%), Postives = 122/158 (77.22%), Query Frame = 0


Query: 1   MENPNSYVHSNIAGLVTLLEACKSANPQPAVVWASSSSVY-------------------- 60
           MENP+SYVHSNIAG V LLE CKSANPQPA+VWASSSSVY                    
Sbjct: 182 MENPSSYVHSNIAGFVNLLEVCKSANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASL 241

Query: 61  --ATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVFRG 120
             ATKKAGEEI HTYNHIYGLS+TGLRFFTVYGPWGRPDMAYF FTR+IL+GK I++F G
Sbjct: 242 YAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGKAISIFEG 301

Query: 121 KNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSGEENR 137
            N   +ARDFTYIDDIVKGCLG+LDT+ KSTGSG + R
Sbjct: 302 VNHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKR 339

[Close]

BLAST of Carg11949 vs. TAIR 10
Match: AT2G45310.1 (UDP-D-glucuronate 4-epimerase 4 )

HSP 1 Score: 216.5 bits (550), Expect = 1.9e-56
Identity = 107/158 (67.72%), Postives = 119/158 (75.32%), Query Frame = 0


Query: 1   MENPNSYVHSNIAGLVTLLEACKSANPQPAVVWASSSSVY-------------------- 60
           MENP+SYVHSNIAG V LLE CKS NPQPA+VWASSSSVY                    
Sbjct: 188 MENPSSYVHSNIAGFVNLLEICKSVNPQPAIVWASSSSVYGLNTKVPFSEKDKTDQPASL 247

Query: 61  --ATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVFRG 120
             ATKKAGEEI HTYNHIYGLS+TGLRFFTVYGPWGRPDMAYF FT++IL+GK I++F  
Sbjct: 248 YAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILKGKSISIFES 307

Query: 121 KNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSGEENR 137
            N   +ARDFTYIDDIVKGCL +LDT+ KSTGSG + R
Sbjct: 308 ANHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKR 345

[Close]

BLAST of Carg11949 vs. TAIR 10
Match: AT4G12250.1 (UDP-D-glucuronate 4-epimerase 5 )

HSP 1 Score: 209.9 bits (533), Expect = 1.7e-54
Identity = 105/158 (66.46%), Postives = 119/158 (75.32%), Query Frame = 0


Query: 1   MENPNSYVHSNIAGLVTLLEACKSANPQPAVVWASSSSVY-------------------- 60
           M+NP SYV+SNIAG V LLE  KSANPQPA+VWASSSSVY                    
Sbjct: 187 MQNPGSYVNSNIAGFVNLLEVSKSANPQPAIVWASSSSVYGLNSKVPFSEKDRTDQPASL 246

Query: 61  --ATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVFRG 120
             ATKKAGE I HTYNHIYGLS+TGLRFFTVYGPWGRPDMAYF FT++IL+GK ITVF  
Sbjct: 247 YAATKKAGEGIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILKGKTITVFES 306

Query: 121 KNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSGEENR 137
            ++  +ARDFTYIDDIVKGCLG+LDT+ KSTGSG + +
Sbjct: 307 PDKGSVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKK 344

The following BLAST results are available for this feature:

BLAST of Carg11949 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7030068.1	2.3e-104	100.00	UDP-glucuronate 4-epimerase 1, partial [Cucurbita argyrosperma subsp. argyrosper...	[more]
XP_023547336.1	5.4e-66	85.71	UDP-glucuronate 4-epimerase 1 [Cucurbita pepo subsp. pepo]	[more]
XP_022999693.1	5.4e-66	85.71	UDP-glucuronate 4-epimerase 1 [Cucurbita maxima]	[more]
XP_008465609.1	5.4e-66	85.71	PREDICTED: UDP-glucuronate 4-epimerase 1 [Cucumis melo] >KAA0039739.1 UDP-glucur...	[more]
KAE8651646.1	5.4e-66	85.71	hypothetical protein Csa_021341 [Cucumis sativus]	[more]

BLAST of Carg11949 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M0B6	2.1e-65	77.85	UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thaliana OX=3702 GN=GAE1 PE=1 SV=1	[more]
Q9LPC1	1.6e-57	70.25	UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thaliana OX=3702 GN=GAE2 PE=2 SV=1	[more]
O81312	1.6e-57	70.25	UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thaliana OX=3702 GN=GAE3 PE=2 SV=1	[more]
O22141	2.6e-55	67.72	UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thaliana OX=3702 GN=GAE4 PE=1 SV=1	[more]
Q9STI6	2.5e-53	66.46	UDP-glucuronate 4-epimerase 5 OS=Arabidopsis thaliana OX=3702 GN=GAE5 PE=2 SV=1	[more]

BLAST of Carg11949 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TES1	2.6e-66	85.71	UDP-glucuronate 4-epimerase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A6J1KKG5	2.6e-66	85.71	UDP-glucuronate 4-epimerase 1 OS=Cucurbita maxima OX=3661 GN=LOC111493970 PE=4 S...	[more]
A0A0A0LM85	2.6e-66	85.71	UDP-glucuronate 5-epimerase OS=Cucumis sativus OX=3659 GN=Csa_2G037230 PE=4 SV=1	[more]
A0A6J1G3Z3	2.6e-66	85.71	UDP-glucuronate 4-epimerase 1 OS=Cucurbita moschata OX=3662 GN=LOC111450569 PE=4...	[more]
A0A1S3CP94	2.6e-66	85.71	UDP-glucuronate 4-epimerase 1 OS=Cucumis melo OX=3656 GN=LOC103503248 PE=4 SV=1	[more]

BLAST of Carg11949 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30440.1	1.5e-66	77.85	UDP-D-glucuronate 4-epimerase 1	[more]
AT1G02000.1	1.2e-58	70.25	UDP-D-glucuronate 4-epimerase 2	[more]
AT4G00110.1	1.2e-58	70.25	UDP-D-glucuronate 4-epimerase 3	[more]
AT2G45310.1	1.9e-56	67.72	UDP-D-glucuronate 4-epimerase 4	[more]
AT4G12250.1	1.7e-54	66.46	UDP-D-glucuronate 4-epimerase 5	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001509	NAD-dependent epimerase/dehydratase	PFAM	PF01370	Epimerase	coord: 41..124 e-value: 1.4E-13 score: 50.9
None	No IPR available	GENE3D	3.40.50.720		coord: 1..41 e-value: 7.1E-7 score: 30.4
None	No IPR available	GENE3D	3.40.50.720		coord: 42..150 e-value: 3.1E-22 score: 80.8
None	No IPR available	PANTHER	PTHR43574	EPIMERASE-RELATED	coord: 1..41
None	No IPR available	PANTHER	PTHR43574:SF53	UDP-GLUCURONATE 5-EPIMERASE	coord: 1..41
None	No IPR available	PANTHER	PTHR43574	EPIMERASE-RELATED	coord: 41..137
None	No IPR available	PANTHER	PTHR43574:SF53	UDP-GLUCURONATE 5-EPIMERASE	coord: 41..137
IPR036291	NAD(P)-binding domain superfamily	SUPERFAMILY	51735	NAD(P)-binding Rossmann-fold domains	coord: 2..140

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11949-RA	Carg11949-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003824	catalytic activity