Carg11948 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg11948
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	UDP-glucuronate 4-epimerase
Location	Carg_Chr05: 8727532 .. 8727789 (+)
RNA-Seq Expression	Carg11948
Synteny	Carg11948

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGCGGCATCCAATGGAGAAACAACTCCGTCACTCCGCCCAAACCCACCGTCCTAATGGCCTCTCTGTTCTCGTCACCGGCGCTGCTGGCTTCGTCGGAACCCATGTTTCCCTCGCTTTGAAGAACGCGGCGACGGCGTTGTCGGCCTTGATAATTTCAATTCCTATTATGACCCTTCCTTTGAAAAAAAGCCCGGAAATCGCTTCTCTCCGATCCACGGAATCTTCGTCGTTCACGGCGATTAAACGACGCTAG

mRNA sequence

ATGGGGCGGCATCCAATGGAGAAACAACTCCGTCACTCCGCCCAAACCCACCGTCCTAATGGCCTCTCTGTTCTCGTCACCGGCGCTGCTGGCTTCGTCGGAACCCATGTTTCCCTCGCTTTGAAGAACGCGGCGACGGCGTTGTCGGCCTTGATAATTTCAATTCCTATTATGACCCTTCCTTTGAAAAAAAGCCCGGAAATCGCTTCTCTCCGATCCACGGAATCTTCGTCGTTCACGGCGATTAAACGACGCTAG

Coding sequence (CDS)

ATGGGGCGGCATCCAATGGAGAAACAACTCCGTCACTCCGCCCAAACCCACCGTCCTAATGGCCTCTCTGTTCTCGTCACCGGCGCTGCTGGCTTCGTCGGAACCCATGTTTCCCTCGCTTTGAAGAACGCGGCGACGGCGTTGTCGGCCTTGATAATTTCAATTCCTATTATGACCCTTCCTTTGAAAAAAAGCCCGGAAATCGCTTCTCTCCGATCCACGGAATCTTCGTCGTTCACGGCGATTAAACGACGCTAG

Protein sequence

MGRHPMEKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALKNAATALSALIISIPIMTLPLKKSPEIASLRSTESSSFTAIKRR

Homology

[Close]

BLAST of Carg11948 vs. NCBI nr
Match: KAG7030067.1 (UDP-glucuronate 4-epimerase 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 157.5 bits (397), Expect = 5.0e-35
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1  MGRHPMEKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALKNAATALSALIISIPIMTL 60
          MGRHPMEKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALKNAATALSALIISIPIMTL
Sbjct: 1  MGRHPMEKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALKNAATALSALIISIPIMTL 60

Query: 61 PLKKSPEIASLRSTESSSFTAIKRR 86
          PLKKSPEIASLRSTESSSFTAIKRR
Sbjct: 61 PLKKSPEIASLRSTESSSFTAIKRR 85

[Close]

BLAST of Carg11948 vs. NCBI nr
Match: XP_023547336.1 (UDP-glucuronate 4-epimerase 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 72.0 bits (175), Expect = 2.8e-09
Identity = 37/45 (82.22%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 7   EKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALKNAATALSAL 52
           EKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALK     +  L
Sbjct: 76  EKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALKKRGDGVVGL 120

[Close]

BLAST of Carg11948 vs. NCBI nr
Match: XP_022999693.1 (UDP-glucuronate 4-epimerase 1 [Cucurbita maxima])

HSP 1 Score: 72.0 bits (175), Expect = 2.8e-09
Identity = 37/45 (82.22%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 7   EKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALKNAATALSAL 52
           EKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALK     +  L
Sbjct: 76  EKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALKKRGDGVVGL 120

[Close]

BLAST of Carg11948 vs. NCBI nr
Match: XP_022946532.1 (UDP-glucuronate 4-epimerase 1 [Cucurbita moschata])

HSP 1 Score: 72.0 bits (175), Expect = 2.8e-09
Identity = 37/45 (82.22%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 7   EKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALKNAATALSAL 52
           EKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALK     +  L
Sbjct: 76  EKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALKKRGDGVVGL 120

[Close]

BLAST of Carg11948 vs. NCBI nr
Match: KAG6599128.1 (UDP-glucuronate 4-epimerase 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030066.1 UDP-glucuronate 4-epimerase 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 72.0 bits (175), Expect = 2.8e-09
Identity = 37/45 (82.22%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 7   EKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALKNAATALSAL 52
           EKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALK     +  L
Sbjct: 76  EKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALKKRGDGVVGL 120

[Close]

BLAST of Carg11948 vs. ExPASy Swiss-Prot
Match: Q9M0B6 (UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thaliana OX=3702 GN=GAE1 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 7.8e-07
Identity = 28/45 (62.22%), Postives = 33/45 (73.33%), Query Frame = 0


Query: 7   EKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALKNAATALSAL 52
           EKQ+R SAQ HR  G+SVLVTGA GFVG+HVSLAL+     +  L
Sbjct: 73  EKQVRTSAQIHRSGGISVLVTGATGFVGSHVSLALRKRGDGVVGL 117

[Close]

BLAST of Carg11948 vs. ExPASy Swiss-Prot
Match: Q9LIS3 (UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thaliana OX=3702 GN=GAE6 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 5.1e-06
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 0


Query: 1   MGRHPMEKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALK 43
           +G    EK++R S+   RP+GLSVLVTGAAGFVG+H SLAL+
Sbjct: 91  IGGAAWEKRVRQSSTAKRPHGLSVLVTGAAGFVGSHCSLALR 132

[Close]

BLAST of Carg11948 vs. ExPASy Swiss-Prot
Match: Q9LPC1 (UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thaliana OX=3702 GN=GAE2 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.1e-05
Identity = 27/45 (60.00%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 7   EKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALKNAATALSAL 52
           EK++R SA+    NG+SVLVTGAAGFVGTHVS ALK     +  L
Sbjct: 77  EKRVRSSARVRTRNGVSVLVTGAAGFVGTHVSAALKRRGDGVLGL 121

[Close]

BLAST of Carg11948 vs. ExPASy Swiss-Prot
Match: Q9STI6 (UDP-glucuronate 4-epimerase 5 OS=Arabidopsis thaliana OX=3702 GN=GAE5 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 5.6e-05
Identity = 25/45 (55.56%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 7   EKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALKNAATALSAL 52
           EKQ+R SA+     GL+VLVTGA+GFVGTHVS+AL+     +  L
Sbjct: 81  EKQVRKSARPRSHGGLTVLVTGASGFVGTHVSIALRRRGDGVLGL 125

[Close]

BLAST of Carg11948 vs. ExPASy Swiss-Prot
Match: O81312 (UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thaliana OX=3702 GN=GAE3 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 9.6e-05
Identity = 26/45 (57.78%), Postives = 30/45 (66.67%), Query Frame = 0


Query: 7   EKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALKNAATALSAL 52
           EK++R SA+     G SVLVTGAAGFVGTHVS ALK     +  L
Sbjct: 76  EKRVRSSARLRTRRGFSVLVTGAAGFVGTHVSAALKRRGDGVLGL 120

[Close]

BLAST of Carg11948 vs. ExPASy TrEMBL
Match: A0A6J1KKG5 (UDP-glucuronate 4-epimerase 1 OS=Cucurbita maxima OX=3661 GN=LOC111493970 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.3e-09
Identity = 37/45 (82.22%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 7   EKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALKNAATALSAL 52
           EKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALK     +  L
Sbjct: 76  EKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALKKRGDGVVGL 120

[Close]

BLAST of Carg11948 vs. ExPASy TrEMBL
Match: A0A6J1G3Z3 (UDP-glucuronate 4-epimerase 1 OS=Cucurbita moschata OX=3662 GN=LOC111450569 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.3e-09
Identity = 37/45 (82.22%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 7   EKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALKNAATALSAL 52
           EKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALK     +  L
Sbjct: 76  EKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALKKRGDGVVGL 120

[Close]

BLAST of Carg11948 vs. ExPASy TrEMBL
Match: B9HBG7 (NAD(P)-bd_dom domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G178500 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.8e-07
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 7   EKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALK 43
           EKQ+RHSAQ HR NG+SVLVTGAAGFVG+HVSLALK
Sbjct: 76  EKQIRHSAQIHRSNGMSVLVTGAAGFVGSHVSLALK 111

[Close]

BLAST of Carg11948 vs. ExPASy TrEMBL
Match: A0A6M2EZ64 (NAD(P)-bd_dom domain-containing protein OS=Populus davidiana OX=266767 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.8e-07
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 7   EKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALK 43
           EKQ+RHSAQ HR NG+SVLVTGAAGFVG+HVSLALK
Sbjct: 76  EKQIRHSAQIHRSNGMSVLVTGAAGFVGSHVSLALK 111

[Close]

BLAST of Carg11948 vs. ExPASy TrEMBL
Match: A0A4V6A9C4 (NAD(P)-bd_dom domain-containing protein OS=Populus alba OX=43335 GN=D5086_0000128950 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.8e-07
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 7   EKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALK 43
           EKQ+RHSAQ HR NG+SVLVTGAAGFVG+HVSLALK
Sbjct: 76  EKQIRHSAQIHRSNGMSVLVTGAAGFVGSHVSLALK 111

[Close]

BLAST of Carg11948 vs. TAIR 10
Match: AT4G30440.1 (UDP-D-glucuronate 4-epimerase 1 )

HSP 1 Score: 54.3 bits (129), Expect = 5.6e-08
Identity = 28/45 (62.22%), Postives = 33/45 (73.33%), Query Frame = 0


Query: 7   EKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALKNAATALSAL 52
           EKQ+R SAQ HR  G+SVLVTGA GFVG+HVSLAL+     +  L
Sbjct: 73  EKQVRTSAQIHRSGGISVLVTGATGFVGSHVSLALRKRGDGVVGL 117

[Close]

BLAST of Carg11948 vs. TAIR 10
Match: AT3G23820.1 (UDP-D-glucuronate 4-epimerase 6 )

HSP 1 Score: 51.6 bits (122), Expect = 3.6e-07
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 0


Query: 1   MGRHPMEKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALK 43
           +G    EK++R S+   RP+GLSVLVTGAAGFVG+H SLAL+
Sbjct: 91  IGGAAWEKRVRQSSTAKRPHGLSVLVTGAAGFVGSHCSLALR 132

[Close]

BLAST of Carg11948 vs. TAIR 10
Match: AT1G02000.1 (UDP-D-glucuronate 4-epimerase 2 )

HSP 1 Score: 50.4 bits (119), Expect = 8.0e-07
Identity = 27/45 (60.00%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 7   EKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALKNAATALSAL 52
           EK++R SA+    NG+SVLVTGAAGFVGTHVS ALK     +  L
Sbjct: 77  EKRVRSSARVRTRNGVSVLVTGAAGFVGTHVSAALKRRGDGVLGL 121

[Close]

BLAST of Carg11948 vs. TAIR 10
Match: AT4G12250.1 (UDP-D-glucuronate 4-epimerase 5 )

HSP 1 Score: 48.1 bits (113), Expect = 4.0e-06
Identity = 25/45 (55.56%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 7   EKQLRHSAQTHRPNGLSVLVTGAAGFVGTHVSLALKNAATALSAL 52
           EKQ+R SA+     GL+VLVTGA+GFVGTHVS+AL+     +  L
Sbjct: 81  EKQVRKSARPRSHGGLTVLVTGASGFVGTHVSIALRRRGDGVLGL 125

[Close]

BLAST of Carg11948 vs. TAIR 10
Match: AT2G45310.1 (UDP-D-glucuronate 4-epimerase 4 )

HSP 1 Score: 47.4 bits (111), Expect = 6.8e-06
Identity = 28/47 (59.57%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 7   EKQLRHSA--QTHRPNGLSVLVTGAAGFVGTHVSLALKNAATALSAL 52
           EK+LR SA  +T   NG++VLVTGAAGFVGTHVS ALK     +  L
Sbjct: 80  EKRLRSSARIRTSTNNGITVLVTGAAGFVGTHVSAALKRRGDGVIGL 126

The following BLAST results are available for this feature:

BLAST of Carg11948 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7030067.1	5.0e-35	100.00	UDP-glucuronate 4-epimerase 1, partial [Cucurbita argyrosperma subsp. argyrosper...	[more]
XP_023547336.1	2.8e-09	82.22	UDP-glucuronate 4-epimerase 1 [Cucurbita pepo subsp. pepo]	[more]
XP_022999693.1	2.8e-09	82.22	UDP-glucuronate 4-epimerase 1 [Cucurbita maxima]	[more]
XP_022946532.1	2.8e-09	82.22	UDP-glucuronate 4-epimerase 1 [Cucurbita moschata]	[more]
KAG6599128.1	2.8e-09	82.22	UDP-glucuronate 4-epimerase 1, partial [Cucurbita argyrosperma subsp. sororia] >...	[more]

BLAST of Carg11948 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M0B6	7.8e-07	62.22	UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thaliana OX=3702 GN=GAE1 PE=1 SV=1	[more]
Q9LIS3	5.1e-06	61.90	UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thaliana OX=3702 GN=GAE6 PE=1 SV=1	[more]
Q9LPC1	1.1e-05	60.00	UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thaliana OX=3702 GN=GAE2 PE=2 SV=1	[more]
Q9STI6	5.6e-05	55.56	UDP-glucuronate 4-epimerase 5 OS=Arabidopsis thaliana OX=3702 GN=GAE5 PE=2 SV=1	[more]
O81312	9.6e-05	57.78	UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thaliana OX=3702 GN=GAE3 PE=2 SV=1	[more]

BLAST of Carg11948 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KKG5	1.3e-09	82.22	UDP-glucuronate 4-epimerase 1 OS=Cucurbita maxima OX=3661 GN=LOC111493970 PE=4 S...	[more]
A0A6J1G3Z3	1.3e-09	82.22	UDP-glucuronate 4-epimerase 1 OS=Cucurbita moschata OX=3662 GN=LOC111450569 PE=4...	[more]
B9HBG7	2.8e-07	86.11	NAD(P)-bd_dom domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_...	[more]
A0A6M2EZ64	2.8e-07	86.11	NAD(P)-bd_dom domain-containing protein OS=Populus davidiana OX=266767 PE=4 SV=1	[more]
A0A4V6A9C4	2.8e-07	86.11	NAD(P)-bd_dom domain-containing protein OS=Populus alba OX=43335 GN=D5086_000012...	[more]

BLAST of Carg11948 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30440.1	5.6e-08	62.22	UDP-D-glucuronate 4-epimerase 1	[more]
AT3G23820.1	3.6e-07	61.90	UDP-D-glucuronate 4-epimerase 6	[more]
AT1G02000.1	8.0e-07	60.00	UDP-D-glucuronate 4-epimerase 2	[more]
AT4G12250.1	4.0e-06	55.56	UDP-D-glucuronate 4-epimerase 5	[more]
AT2G45310.1	6.8e-06	59.57	UDP-D-glucuronate 4-epimerase 4	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.720		coord: 2..80 e-value: 1.5E-5 score: 26.3
IPR036291	NAD(P)-binding domain superfamily	SUPERFAMILY	51735	NAD(P)-binding Rossmann-fold domains	coord: 12..46

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11948-RA	Carg11948-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane