Carg11942 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg11942
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr05: 340284 .. 341358 (+)
RNA-Seq ExpressionCarg11942
SyntenyCarg11942
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTACCTTGGGCAATTCTGTATTTCAGTCCTTTGATGGGTTGGAAGAAGAAAGGCATGATTTGGAAGGAACTTCAACTGTTCTTACATTATTTTGGTAAGCAAGGATTAATTTGGCTGTGATGGAGGTTTTCTGTTAGTATTTTGATATGTCTACTCAAGTAGAAGGAAATAGATGTGTATAAACTGATTATCGCACATTATTTTAACCTCAAGGAGGTAGGCTTAGTTCAAGTTTCGTTCATTCTCCTTAAGCGCAATGAGATTTACCCGTGCTCATTCATGTTCATTGTGCTTGTTTAAGAACAACTTTGGCTAGTCTTATTTCTGAAGTGCACCTAGTGGATGGGATTATCATACGATAACTTTGCATTCACATAGTGGACAATGGACTGTCTAAGTACTTACTGGCATTTCAAGCACTGCTCAAATAGTAGCCTTTTATATGCATTACTAATTTCATCGTTGTTCCTCACTGAGATTGTTGCGGATAATCACCTTTTTCTTCTGGAGGGATATGAATTGTGAATTTTAAGATTATGTGCACAGTTGTCTGGATCTTCTTGCTGAAATTTAGCTCTTCACTTCATTTACAGATGTAGTTTATTAAGTGTTTTCTTTGCTTCTGCGTGTCTTATTGCTATTGTTCTTCAAGTAGGGGGTTCTCACCTCATTGGAGTCTCGCACTTGTTGGATAATGGCTTTGGATGTTTCCCTTGGTAAACATATTGTTTGGCATAAAGTAAGTACACTCAAATATGGTGTTCTTTTCAGGAGGTTTGTGGGCTCATCGTTTTTCCAGCAAAGCAGTTAAAGGTCCTGAGAAAATTGAAATGGTAAAAACAGTAGATGTTGGAAGATGTTGCAGGGCCCATGGCGTTTCCAAGAGGCTGTATCACATCCCAAATAGCAAAAGCCACTGCATGAACGATGTTTGAATTTTCTCCCAGTCCTCGTAGCATCCAATCCTAGAAGGAACCAAAATCATGAATCTTTGTAACAGCCCAAGCCCATCTGTCCTCTTTCTGTCCTCTTTGGATTTTTCCTCTCGGATTTTAAAATACGTTTGCTAGGG

mRNA sequence

ATGTTACCTTGGGCAATTCTGTATTTCAGTCCTTTGATGGGTTGGAAGAAGAAAGGCATGATTTGGAAGGAACTTCAACTGTTCTTACATTATTTTGGAGGTTTGTGGGCTCATCGTTTTTCCAGCAAAGCAGTTAAAGGTCCTGAGAAAATTGAAATGGTAAAAACAGTAGATGTTGGAAGATGTTGCAGGGCCCATGGCGTTTCCAAGAGGCTGTATCACATCCCAAATAGCAAAAGCCACTGCATGAACGATGTTTGAATTTTCTCCCAGTCCTCGTAGCATCCAATCCTAGAAGGAACCAAAATCATGAATCTTTGTAACAGCCCAAGCCCATCTGTCCTCTTTCTGTCCTCTTTGGATTTTTCCTCTCGGATTTTAAAATACGTTTGCTAGGG

Coding sequence (CDS)

ATGTTACCTTGGGCAATTCTGTATTTCAGTCCTTTGATGGGTTGGAAGAAGAAAGGCATGATTTGGAAGGAACTTCAACTGTTCTTACATTATTTTGGAGGTTTGTGGGCTCATCGTTTTTCCAGCAAAGCAGTTAAAGGTCCTGAGAAAATTGAAATGGTAAAAACAGTAGATGTTGGAAGATGTTGCAGGGCCCATGGCGTTTCCAAGAGGCTGTATCACATCCCAAATAGCAAAAGCCACTGCATGAACGATGTTTGA

Protein sequence

MLPWAILYFSPLMGWKKKGMIWKELQLFLHYFGGLWAHRFSSKAVKGPEKIEMVKTVDVGRCCRAHGVSKRLYHIPNSKSHCMNDV
Homology
[Close]
BLAST of Carg11942 vs. NCBI nr
Match: KAG7029248.1 (hypothetical protein SDJN02_07586, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 191.0 bits (484), Expect = 4.1e-45
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MLPWAILYFSPLMGWKKKGMIWKELQLFLHYFGGLWAHRFSSKAVKGPEKIEMVKTVDVG 60
          MLPWAILYFSPLMGWKKKGMIWKELQLFLHYFGGLWAHRFSSKAVKGPEKIEMVKTVDVG
Sbjct: 1  MLPWAILYFSPLMGWKKKGMIWKELQLFLHYFGGLWAHRFSSKAVKGPEKIEMVKTVDVG 60

Query: 61 RCCRAHGVSKRLYHIPNSKSHCMNDV 87
          RCCRAHGVSKRLYHIPNSKSHCMNDV
Sbjct: 61 RCCRAHGVSKRLYHIPNSKSHCMNDV 86

The following BLAST results are available for this feature:
BLAST of Carg11942 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7029248.14.1e-45100.00hypothetical protein SDJN02_07586, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg11942 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg11942 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg11942 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg11942-RACarg11942-RAmRNA