Carg11885 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg11885
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr05: 611559 .. 612643 (-)
RNA-Seq ExpressionCarg11885
SyntenyCarg11885
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCGAAGCGAAGTGTGAGTGAAGCCTTTGAAACTGATGCTCCATCACGTGAACTGTCAGCGGGACTTGCAATTGCAACCACCTTCCTATGCCCCTATGATGGACAGCGCAGATTGCTAGGCCTCTTGGGCCACCTCCAAATCATTATTATAGTGGTAGATTTTCGGTACAAACATAAATTCTTGCTCAATAATAACCCCCCACATAATTTCCTGGCAATAATGGTCCAAAAGCTTCAATCCTGTCATTGTGCATTGTAATTCTACCAAATTTGGGGAAGATGCTGCGCCGATCATCGACAGCTAATGTTCAAAACTAATGGGTTTGTGGGGCTCTCTGTTTTCTTCAAAGCTGTAAGGATTCTGAGTTACAGAGCGCTGGACTGAAGCTCATTTTGTAGAATGTGGGCGCATAGCGACAACTTCAAATCTCAGACCCACTTCTCTTGGTTTTTCTCTCTTTCTCTCTTTCTCGCCTCTTTCGGCCCAAACCATTTGGTGCGCATTAATAATGATCTTCGTTTGTTTTCGAAATGTTGACAAAACTGATTGTGTATCGCCATTTCGCCACAGGGAGCTCTGTCTGAATAAACCGATTGAGTGGGAGCATTGAAGCGGAGGAGAAACGAGGGCGAAACTTGAATCGCCATTTTAGGCAGTGATCAGTCTATTTCACCGTTTGTGCATCGATTTGTGCTTTTTGACGTCTGGAAACAAAAAGTTGTAAGAAAAGGAAGGAAGTTCAGAGATTAGTCAAAAAGTGATTAGCAACCATAATCTAAGCATACGCCAGATGTTTGTTTAAATGCCCAAGTGATATTTTATTTATTTATCTTTTTACTGGATTCTCGTTCTTAATGCTGCACAGAGATTACTCATTACGCCCATTCGATTCAATCTGACAGGTGGAATATCACGTGCTGTTCATCCTCTGGCTGGTGTTGGCTGCTCCACTGTTTGGAAGGCACTTGGAATTAAACTAATAGGTGAGAAATTGTTGGTGCTTTTTAAAGTATTTTGTGAAAGCTTGATCTATTTTATATGATGACTAATATTAATGGGGTTTGATGTTAGGTCAGTGA

mRNA sequence

ATGGCATCGAAGCGAAGTGTGAGTGAAGCCTTTGAAACTGATGCTCCATCACGTGAACTGTCAGCGGGACTTGCAATTGCAACCACCTTCCTATGCCCCTATGATGGACAGCGCAGATTGCTAGGCCTCTTGGGCCACCTCCAAATCATTATTATAGTGAGATTACTCATTACGCCCATTCGATTCAATCTGACAGGTGGAATATCACGTGCTGTTCATCCTCTGGCTGGTGTTGGCTGCTCCACTGTTTGGAAGGCACTTGGAATTAAACTAATAGGTCAGTGA

Coding sequence (CDS)

ATGGCATCGAAGCGAAGTGTGAGTGAAGCCTTTGAAACTGATGCTCCATCACGTGAACTGTCAGCGGGACTTGCAATTGCAACCACCTTCCTATGCCCCTATGATGGACAGCGCAGATTGCTAGGCCTCTTGGGCCACCTCCAAATCATTATTATAGTGAGATTACTCATTACGCCCATTCGATTCAATCTGACAGGTGGAATATCACGTGCTGTTCATCCTCTGGCTGGTGTTGGCTGCTCCACTGTTTGGAAGGCACTTGGAATTAAACTAATAGGTCAGTGA

Protein sequence

MASKRSVSEAFETDAPSRELSAGLAIATTFLCPYDGQRRLLGLLGHLQIIIIVRLLITPIRFNLTGGISRAVHPLAGVGCSTVWKALGIKLIGQ
Homology
[Close]
BLAST of Carg11885 vs. NCBI nr
Match: KAG7029303.1 (hypothetical protein SDJN02_07641, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 184.1 bits (466), Expect = 5.5e-43
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0 

Query: 1  MASKRSVSEAFETDAPSRELSAGLAIATTFLCPYDGQRRLLGLLGHLQIIIIVRLLITPI 60
          MASKRSVSEAFETDAPSRELSAGLAIATTFLCPYDGQRRLLGLLGHLQIIIIVRLLITPI
Sbjct: 1  MASKRSVSEAFETDAPSRELSAGLAIATTFLCPYDGQRRLLGLLGHLQIIIIVRLLITPI 60

Query: 61 RFNLTGGISRAVHPLAGVGCSTVWKALGIKLIGQ 95
          RFNLTGGISRAVHPLAGVGCSTVWKALGIKLIGQ
Sbjct: 61 RFNLTGGISRAVHPLAGVGCSTVWKALGIKLIGQ 94

[Close]
BLAST of Carg11885 vs. NCBI nr
Match: KAG6598333.1 (hypothetical protein SDJN03_08111, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 179.5 bits (454), Expect = 1.4e-41
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0 

Query: 1  MASKRSVSEAFETDAPSRELSAGLAIATTFLCPYDGQRRLLGLLGHLQIIIIVRLLITPI 60
          MASKRSVSEAFETDAPSRELSAGLAIATTFLCPYDGQRRLLGLLGHLQIIIIVRLLITPI
Sbjct: 1  MASKRSVSEAFETDAPSRELSAGLAIATTFLCPYDGQRRLLGLLGHLQIIIIVRLLITPI 60

Query: 61 RFNLTGGISRAVHPLAGVGCSTVWKALGIKLI 93
          RFNLTGGISRAVHPLAGVGCSTVWKALGIKLI
Sbjct: 61 RFNLTGGISRAVHPLAGVGCSTVWKALGIKLI 92

The following BLAST results are available for this feature:
BLAST of Carg11885 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7029303.15.5e-43100.00hypothetical protein SDJN02_07641, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6598333.11.4e-41100.00hypothetical protein SDJN03_08111, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg11885 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg11885 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg11885 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg11885-RACarg11885-RAmRNA