Carg11866 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg11866
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	F-box protein GID2-like
Location	Carg_Chr05: 697176 .. 697592 (+)
RNA-Seq Expression	Carg11866
Synteny	Carg11866

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAAATCAAATCAGTTTCAGAGGAACAACAATCCCCACCACCCTCCTCCTCTGCTTTTGCGAATTTAGACGACAATCTCTTGTTCGAGGTGTTTAAGCACGTTGACGCAAGGACACTCGCCACGGCCGCCGGCGTCAGCAAGCAGTGGTACAAAACCGCCCACGATGAGTGGCTCTGGGAGTTGCTCTGCACCAAACACTGGGCTAACATCGGCTGTGCTAACCAACAGCTACGCTCCGTCGTGCTTGCGCTTGGTGGCTTCCGTCGATTGCACTCTCTTTACCCATTTCCCCCTATCATAGGATCCGCATCCTGTATTCCCTGGGGCAAAGACGAGCTTCATCTCTCCCTCTCTCTTCTCTCAATTCGGTACTACGAGAAGATGAAGTTCAAAAACAGACCCACTTCTTGA

mRNA sequence

ATGAAGAAAATCAAATCAGTTTCAGAGGAACAACAATCCCCACCACCCTCCTCCTCTGCTTTTGCGAATTTAGACGACAATCTCTTGTTCGAGGTGTTTAAGCACGTTGACGCAAGGACACTCGCCACGGCCGCCGGCGTCAGCAAGCAGTGGTACAAAACCGCCCACGATGAGTGGCTCTGGGAGTTGCTCTGCACCAAACACTGGGCTAACATCGGCTGTGCTAACCAACAGCTACGCTCCGTCGTGCTTGCGCTTGGTGGCTTCCGTCGATTGCACTCTCTTTACCCATTTCCCCCTATCATAGGATCCGCATCCTGTATTCCCTGGGGCAAAGACGAGCTTCATCTCTCCCTCTCTCTTCTCTCAATTCGGTACTACGAGAAGATGAAGTTCAAAAACAGACCCACTTCTTGA

Coding sequence (CDS)

ATGAAGAAAATCAAATCAGTTTCAGAGGAACAACAATCCCCACCACCCTCCTCCTCTGCTTTTGCGAATTTAGACGACAATCTCTTGTTCGAGGTGTTTAAGCACGTTGACGCAAGGACACTCGCCACGGCCGCCGGCGTCAGCAAGCAGTGGTACAAAACCGCCCACGATGAGTGGCTCTGGGAGTTGCTCTGCACCAAACACTGGGCTAACATCGGCTGTGCTAACCAACAGCTACGCTCCGTCGTGCTTGCGCTTGGTGGCTTCCGTCGATTGCACTCTCTTTACCCATTTCCCCCTATCATAGGATCCGCATCCTGTATTCCCTGGGGCAAAGACGAGCTTCATCTCTCCCTCTCTCTTCTCTCAATTCGGTACTACGAGAAGATGAAGTTCAAAAACAGACCCACTTCTTGA

Protein sequence

MKKIKSVSEEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWLWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPIIGSASCIPWGKDELHLSLSLLSIRYYEKMKFKNRPTS

Homology

[Close]

BLAST of Carg11866 vs. NCBI nr
Match: KAG6598351.1 (F-box protein GID2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029322.1 F-box protein GID2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 290.4 bits (742), Expect = 8.0e-75
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MKKIKSVSEEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWL 60
           MKKIKSVSEEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWL
Sbjct: 1   MKKIKSVSEEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWL 60

Query: 61  WELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPIIGSASCIPWGKDELHLSLS 120
           WELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPIIGSASCIPWGKDELHLSLS
Sbjct: 61  WELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPIIGSASCIPWGKDELHLSLS 120

Query: 121 LLSIRYYEKMKFKNRPTS 139
           LLSIRYYEKMKFKNRPTS
Sbjct: 121 LLSIRYYEKMKFKNRPTS 138

[Close]

BLAST of Carg11866 vs. NCBI nr
Match: XP_022962352.1 (F-box protein GID2-like [Cucurbita moschata])

HSP 1 Score: 285.8 bits (730), Expect = 2.0e-73
Identity = 136/138 (98.55%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   MKKIKSVSEEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWL 60
           MKKIKSVSEEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQW KTAHDEWL
Sbjct: 1   MKKIKSVSEEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWCKTAHDEWL 60

Query: 61  WELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPIIGSASCIPWGKDELHLSLS 120
           WELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPI+GSASCIPWGKDELHLSLS
Sbjct: 61  WELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPIMGSASCIPWGKDELHLSLS 120

Query: 121 LLSIRYYEKMKFKNRPTS 139
           LLSIRYYEKMKFKNRPTS
Sbjct: 121 LLSIRYYEKMKFKNRPTS 138

[Close]

BLAST of Carg11866 vs. NCBI nr
Match: XP_023522812.1 (F-box protein GID2-like [Cucurbita pepo subsp. pepo] >XP_023547045.1 F-box protein GID2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 283.1 bits (723), Expect = 1.3e-72
Identity = 135/139 (97.12%), Postives = 138/139 (99.28%), Query Frame = 0


Query: 1   MKKIKSVSEEQQSPPP-SSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEW 60
           MKKIKSVS+EQQSPPP SSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEW
Sbjct: 1   MKKIKSVSQEQQSPPPSSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEW 60

Query: 61  LWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPIIGSASCIPWGKDELHLSL 120
           LWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPP+IGSASCIPWGKDE+HLSL
Sbjct: 61  LWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPVIGSASCIPWGKDEVHLSL 120

Query: 121 SLLSIRYYEKMKFKNRPTS 139
           SLLSIRYYEKMKFKNRPTS
Sbjct: 121 SLLSIRYYEKMKFKNRPTS 139

[Close]

BLAST of Carg11866 vs. NCBI nr
Match: XP_022996700.1 (F-box protein GID2-like [Cucurbita maxima])

HSP 1 Score: 278.9 bits (712), Expect = 2.4e-71
Identity = 132/138 (95.65%), Postives = 135/138 (97.83%), Query Frame = 0


Query: 1   MKKIKSVSEEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWL 60
           MKKIKSVS+EQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATA+GVSKQWYKTAHDEWL
Sbjct: 1   MKKIKSVSQEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATASGVSKQWYKTAHDEWL 60

Query: 61  WELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPIIGSASCIPWGKDELHLSLS 120
           WELLCTKHWANIGCAN QLRSVVLALGGFRRLHSLYPFPPIIGSASCI WGK E+HLSLS
Sbjct: 61  WELLCTKHWANIGCANPQLRSVVLALGGFRRLHSLYPFPPIIGSASCIAWGKGEVHLSLS 120

Query: 121 LLSIRYYEKMKFKNRPTS 139
           LLSIRYYEKMKFKNRPTS
Sbjct: 121 LLSIRYYEKMKFKNRPTS 138

[Close]

BLAST of Carg11866 vs. NCBI nr
Match: XP_008445558.1 (PREDICTED: F-box protein GID2-like [Cucumis melo] >KAA0060929.1 F-box protein GID2-like [Cucumis melo var. makuwa])

HSP 1 Score: 236.5 bits (602), Expect = 1.4e-58
Identity = 115/141 (81.56%), Postives = 123/141 (87.23%), Query Frame = 0


Query: 1   MKKIKSVSEEQQSP---PPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHD 60
           +KK KS S +Q+ P    P  S FANLDDNLLFEVFKHVDARTLATAAGV+KQW+KTAHD
Sbjct: 5   IKKFKSDSNQQEKPDESQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVNKQWFKTAHD 64

Query: 61  EWLWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPIIGSASCIPWGKDELHL 120
           E LWELLCTKHW N+GCANQQLRSVVLALGGFRRLHSLYPFPP+IG     PWGKDE+HL
Sbjct: 65  ERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGCNH--PWGKDEVHL 124

Query: 121 SLSLLSIRYYEKMKFKNRPTS 139
           SLSLLSIRYYEKMKFKNRPTS
Sbjct: 125 SLSLLSIRYYEKMKFKNRPTS 143

[Close]

BLAST of Carg11866 vs. ExPASy Swiss-Prot
Match: Q9STX3 (F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 6.7e-40
Identity = 84/135 (62.22%), Postives = 100/135 (74.07%), Query Frame = 0


Query: 2   KKIKSVSEEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWLW 61
           KK+KS  EE+         F+NLD+NL++EV KHVDA+TLA ++ VSK W+KTA DE LW
Sbjct: 20  KKMKSTEEEE-------IGFSNLDENLVYEVLKHVDAKTLAMSSCVSKIWHKTAQDERLW 79

Query: 62  ELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPIIGSASCIPWGKDELHLSLSL 121
           EL+CT+HW NIGC   QLRSVVLALGGFRRLHSLY + P+        +GKDEL L+LSL
Sbjct: 80  ELICTRHWTNIGCGQNQLRSVVLALGGFRRLHSLYLW-PLSKPNPRARFGKDELKLTLSL 139

Query: 122 LSIRYYEKMKFKNRP 137
           LSIRYYEKM F  RP
Sbjct: 140 LSIRYYEKMSFTKRP 146

[Close]

BLAST of Carg11866 vs. ExPASy Swiss-Prot
Match: Q7XAK4 (F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.3e-22
Identity = 56/139 (40.29%), Postives = 85/139 (61.15%), Query Frame = 0


Query: 9   EEQQSPPPSSSA------FANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWLWE 68
           ++Q+  PP  +         +L ++L+FEV +  +ARTLA AA VS+ W + A DE LWE
Sbjct: 55  QQQEEQPPEDAGEGEQPRVPDLGEDLVFEVLRRAEARTLAAAACVSRGWRQLAEDERLWE 114

Query: 69  LLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPIIGSASCIP-----------WG 128
             C + WAN+G + +QLR+VVL+LGGFRRLH++Y   P+    + +P            G
Sbjct: 115 AACVREWANLGFSERQLRAVVLSLGGFRRLHAVY-IRPLQWRGAGVPRQQGRRQPPVRLG 174

Query: 129 KDELHLSLSLLSIRYYEKM 131
           +D++ LSLSL SI +++ M
Sbjct: 175 RDQVQLSLSLFSIGFFQNM 192

[Close]

BLAST of Carg11866 vs. ExPASy Swiss-Prot
Match: Q9LUB6 (F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.9e-11
Identity = 37/104 (35.58%), Postives = 61/104 (58.65%), Query Frame = 0


Query: 27  NLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWLWELLCTKHWANIGCANQQLRSVVLAL 86
           ++L E+ + +D  +L +AA V + W   A ++ +WE LC +  +     +  LRSVV AL
Sbjct: 33  DVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEELCFRQVS--PRPSLSLRSVVSAL 92

Query: 87  GGFRRLHSLYPFPPIIGSASCIPWGKDELHLSLSLLSIRYYEKM 131
           GG+R L+ L    P++     + W +D+L LSLSL  + YYE++
Sbjct: 93  GGYRCLYFLC-IRPVLARLPKLLWTRDQLQLSLSLYCVHYYERL 133

[Close]

BLAST of Carg11866 vs. ExPASy TrEMBL
Match: A0A6J1HCI1 (F-box protein GID2-like OS=Cucurbita moschata OX=3662 GN=LOC111462823 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 9.6e-74
Identity = 136/138 (98.55%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   MKKIKSVSEEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWL 60
           MKKIKSVSEEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQW KTAHDEWL
Sbjct: 1   MKKIKSVSEEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWCKTAHDEWL 60

Query: 61  WELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPIIGSASCIPWGKDELHLSLS 120
           WELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPI+GSASCIPWGKDELHLSLS
Sbjct: 61  WELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPIMGSASCIPWGKDELHLSLS 120

Query: 121 LLSIRYYEKMKFKNRPTS 139
           LLSIRYYEKMKFKNRPTS
Sbjct: 121 LLSIRYYEKMKFKNRPTS 138

[Close]

BLAST of Carg11866 vs. ExPASy TrEMBL
Match: A0A6J1K7I7 (F-box protein GID2-like OS=Cucurbita maxima OX=3661 GN=LOC111491869 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 1.2e-71
Identity = 132/138 (95.65%), Postives = 135/138 (97.83%), Query Frame = 0


Query: 1   MKKIKSVSEEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWL 60
           MKKIKSVS+EQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATA+GVSKQWYKTAHDEWL
Sbjct: 1   MKKIKSVSQEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATASGVSKQWYKTAHDEWL 60

Query: 61  WELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPIIGSASCIPWGKDELHLSLS 120
           WELLCTKHWANIGCAN QLRSVVLALGGFRRLHSLYPFPPIIGSASCI WGK E+HLSLS
Sbjct: 61  WELLCTKHWANIGCANPQLRSVVLALGGFRRLHSLYPFPPIIGSASCIAWGKGEVHLSLS 120

Query: 121 LLSIRYYEKMKFKNRPTS 139
           LLSIRYYEKMKFKNRPTS
Sbjct: 121 LLSIRYYEKMKFKNRPTS 138

[Close]

BLAST of Carg11866 vs. ExPASy TrEMBL
Match: A0A5A7V5E1 (F-box protein GID2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00620 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 6.7e-59
Identity = 115/141 (81.56%), Postives = 123/141 (87.23%), Query Frame = 0


Query: 1   MKKIKSVSEEQQSP---PPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHD 60
           +KK KS S +Q+ P    P  S FANLDDNLLFEVFKHVDARTLATAAGV+KQW+KTAHD
Sbjct: 5   IKKFKSDSNQQEKPDESQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVNKQWFKTAHD 64

Query: 61  EWLWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPIIGSASCIPWGKDELHL 120
           E LWELLCTKHW N+GCANQQLRSVVLALGGFRRLHSLYPFPP+IG     PWGKDE+HL
Sbjct: 65  ERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGCNH--PWGKDEVHL 124

Query: 121 SLSLLSIRYYEKMKFKNRPTS 139
           SLSLLSIRYYEKMKFKNRPTS
Sbjct: 125 SLSLLSIRYYEKMKFKNRPTS 143

[Close]

BLAST of Carg11866 vs. ExPASy TrEMBL
Match: A0A1S3BDV6 (F-box protein GID2-like OS=Cucumis melo OX=3656 GN=LOC103488538 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 6.7e-59
Identity = 115/141 (81.56%), Postives = 123/141 (87.23%), Query Frame = 0


Query: 1   MKKIKSVSEEQQSP---PPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHD 60
           +KK KS S +Q+ P    P  S FANLDDNLLFEVFKHVDARTLATAAGV+KQW+KTAHD
Sbjct: 5   IKKFKSDSNQQEKPDESQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVNKQWFKTAHD 64

Query: 61  EWLWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPIIGSASCIPWGKDELHL 120
           E LWELLCTKHW N+GCANQQLRSVVLALGGFRRLHSLYPFPP+IG     PWGKDE+HL
Sbjct: 65  ERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGCNH--PWGKDEVHL 124

Query: 121 SLSLLSIRYYEKMKFKNRPTS 139
           SLSLLSIRYYEKMKFKNRPTS
Sbjct: 125 SLSLLSIRYYEKMKFKNRPTS 143

[Close]

BLAST of Carg11866 vs. ExPASy TrEMBL
Match: A0A0A0LR75 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G355020 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.1e-58
Identity = 115/140 (82.14%), Postives = 122/140 (87.14%), Query Frame = 0


Query: 1   MKKIKSVSEEQQ--SPPPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDE 60
           +KK KSVS +Q+     P  S FANLDDNLLFEVFKHVDARTLAT AGVSKQW+KTAHDE
Sbjct: 5   IKKFKSVSNQQEPDHSQPQPSTFANLDDNLLFEVFKHVDARTLATVAGVSKQWFKTAHDE 64

Query: 61  WLWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPIIGSASCIPWGKDELHLS 120
            LWELLCTKHW N+GCANQQLRSVVLALGGFRRLHSLYPFPP+IG     PWGKDE+HLS
Sbjct: 65  RLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGCNH--PWGKDEVHLS 124

Query: 121 LSLLSIRYYEKMKFKNRPTS 139
           LSLLSIRYYEKMKFKNRPTS
Sbjct: 125 LSLLSIRYYEKMKFKNRPTS 142

[Close]

BLAST of Carg11866 vs. TAIR 10
Match: AT4G24210.1 (F-box family protein )

HSP 1 Score: 164.9 bits (416), Expect = 4.7e-41
Identity = 84/135 (62.22%), Postives = 100/135 (74.07%), Query Frame = 0


Query: 2   KKIKSVSEEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWLW 61
           KK+KS  EE+         F+NLD+NL++EV KHVDA+TLA ++ VSK W+KTA DE LW
Sbjct: 20  KKMKSTEEEE-------IGFSNLDENLVYEVLKHVDAKTLAMSSCVSKIWHKTAQDERLW 79

Query: 62  ELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPIIGSASCIPWGKDELHLSLSL 121
           EL+CT+HW NIGC   QLRSVVLALGGFRRLHSLY + P+        +GKDEL L+LSL
Sbjct: 80  ELICTRHWTNIGCGQNQLRSVVLALGGFRRLHSLYLW-PLSKPNPRARFGKDELKLTLSL 139

Query: 122 LSIRYYEKMKFKNRP 137
           LSIRYYEKM F  RP
Sbjct: 140 LSIRYYEKMSFTKRP 146

[Close]

BLAST of Carg11866 vs. TAIR 10
Match: AT5G48170.1 (F-box family protein )

HSP 1 Score: 69.7 bits (169), Expect = 2.1e-12
Identity = 37/104 (35.58%), Postives = 61/104 (58.65%), Query Frame = 0


Query: 27  NLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWLWELLCTKHWANIGCANQQLRSVVLAL 86
           ++L E+ + +D  +L +AA V + W   A ++ +WE LC +  +     +  LRSVV AL
Sbjct: 33  DVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEELCFRQVS--PRPSLSLRSVVSAL 92

Query: 87  GGFRRLHSLYPFPPIIGSASCIPWGKDELHLSLSLLSIRYYEKM 131
           GG+R L+ L    P++     + W +D+L LSLSL  + YYE++
Sbjct: 93  GGYRCLYFLC-IRPVLARLPKLLWTRDQLQLSLSLYCVHYYERL 133

[Close]

BLAST of Carg11866 vs. TAIR 10
Match: AT5G39250.1 (F-box family protein )

HSP 1 Score: 42.0 bits (97), Expect = 4.6e-04
Identity = 16/47 (34.04%), Postives = 26/47 (55.32%), Query Frame = 0


Query: 26 DNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWLWELLCTKHWANI 73
          + +L  VF  ++   LA+  GV KQW   A D++ W+  C K W ++
Sbjct: 4  EEVLKNVFPLLEGEDLASCMGVCKQWRDIARDDFYWKCQCAKKWPSV 50

The following BLAST results are available for this feature:

BLAST of Carg11866 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6598351.1	8.0e-75	100.00	F-box protein GID2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029322....	[more]
XP_022962352.1	2.0e-73	98.55	F-box protein GID2-like [Cucurbita moschata]	[more]
XP_023522812.1	1.3e-72	97.12	F-box protein GID2-like [Cucurbita pepo subsp. pepo] >XP_023547045.1 F-box prote...	[more]
XP_022996700.1	2.4e-71	95.65	F-box protein GID2-like [Cucurbita maxima]	[more]
XP_008445558.1	1.4e-58	81.56	PREDICTED: F-box protein GID2-like [Cucumis melo] >KAA0060929.1 F-box protein GI...	[more]

BLAST of Carg11866 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9STX3	6.7e-40	62.22	F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1	[more]
Q7XAK4	1.3e-22	40.29	F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1	[more]
Q9LUB6	2.9e-11	35.58	F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1	[more]

BLAST of Carg11866 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HCI1	9.6e-74	98.55	F-box protein GID2-like OS=Cucurbita moschata OX=3662 GN=LOC111462823 PE=4 SV=1	[more]
A0A6J1K7I7	1.2e-71	95.65	F-box protein GID2-like OS=Cucurbita maxima OX=3661 GN=LOC111491869 PE=4 SV=1	[more]
A0A5A7V5E1	6.7e-59	81.56	F-box protein GID2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3BDV6	6.7e-59	81.56	F-box protein GID2-like OS=Cucumis melo OX=3656 GN=LOC103488538 PE=4 SV=1	[more]
A0A0A0LR75	1.1e-58	82.14	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G355020 PE=4 ...	[more]

BLAST of Carg11866 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24210.1	4.7e-41	62.22	F-box family protein	[more]
AT5G48170.1	2.1e-12	35.58	F-box family protein	[more]
AT5G39250.1	4.6e-04	34.04	F-box family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 26..66 e-value: 2.4E-7 score: 30.5
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 18..64 score: 9.179537
None	No IPR available	GENE3D	1.20.1280.50		coord: 3..98 e-value: 5.7E-12 score: 47.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR12874:SF22	F-BOX PROTEIN GID2-LIKE	coord: 6..103 coord: 97..133
IPR045118	F-box only protein FBXO9/FBXO48	PANTHER	PTHR12874	F-BOX ONLY PROTEIN 48-RELATED	coord: 97..133
IPR045118	F-box only protein FBXO9/FBXO48	PANTHER	PTHR12874	F-BOX ONLY PROTEIN 48-RELATED	coord: 6..103
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 13..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11866-RA	Carg11866-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009740	gibberellic acid mediated signaling pathway
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding