Carg11838 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg11838
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionsuccinate dehydrogenase subunit 5, mitochondrial-like
LocationCarg_Chr05: 863454 .. 865009 (-)
RNA-Seq ExpressionCarg11838
SyntenyCarg11838
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGATTCTCAAATCATTATTGCGTTCTGTTCGCGCCAGATCTTACGTCATCGCCGGCGTCACGCACCGGAATTTACTACAGAGTCACCATCAGGCTGCCCGAAGTTTCTTCTCTCTGTCGTCTCATCGTTCTTCTTTCTCAGATTTTCAGCCGAGAGTTTCTTCTGGTATTCCTCCTAATTAGGAATACTTACAGCTATTTATTATAGATTCAAATCTCTCCTAATTAATTTTGGAAAGAAGCGGAATTTCTGATGAAGTCATTCGCTATTCTTTATTCAACTTAATTAATGCTAGCTATTGATTTTCTCAGTTGGTTGCTGATATGCTTGTGTCTTACTGGTGATTAGTTAAATATATAGTTCTTCTACCATGAATTGCACATACAGATGTAGTTCTTACAAATCAAAATTTTGCTTGCTATATTTGTACAGTAAACTGCTATGTTCTTTTCTGCATTAGTATTTATCATCAAGTCTTCATAGTGTTCGCGATTTGTGGTTAGTTTTGTTGAAATGCCGAGTTTCTTTAAGTGCCCCTTATTGTTACTTTAAGCAATGCTTTGTCTTAAAGAATTGTAACAAAATAAATCTCGTATCAGAGAGAAGGAATATCAACTAAAGTTTTAAAACTTCAACATATTCTGTGTAGAAATGTGCACTGTGCAAAGTTTTATTGTTTTAGCTCCCTGCAATGTGAAGTGACTGAATAACGTTGATAGACTGAATTAAATTATTTTTTCAGTATTATAATGTTTGAAAATAAATCGTATGCCTGTTTCTTCTGGTAAATTTCAGCAGATTGTGGCTATCTATCTGGTGTAGCGCACGCTAGATTTTTTAGTGTTGATGTAGTTAATATGCCTACAATTGGAGATACCAAGCTTCAGAATGCTTTCAAGGATTTGATGGCTGCAAGTTGGGATAACCTTCCCGAGTCTGTTGTCTATGATGTAAAGGCAGCATTATCTGGAAGCACTGAAGACAAGGCTGGAAAGGAAATTGTGGAAAATGTTTTCAGAGCAGCTGAAGCGGCAGAGGATTTTGGTGATATACTTGTCAACTTGAAAATGGAAATTGATGATAGCATTGGTGTCAGTGGCGAGGTATTGGAAATTATATATTTATCAAATTAATTTTTTTTTCCTCTCCAGTTTCTTATCAAGTGAAAACTTCCGAGTCTATCTACAGGATGTTAAGCCTTTGTCTGATGAGCTTAAGAAGGCACTACAAACAGTTTATGATCGCTATACAGCCTACTTGGATGCATTTGGTCCTGAGGAAAACTATCTGCGAAAGAAAGTTGAAACCGAGTTAGGAACTAAGATGATATACTTGAAAATGAGATGCAGTGGCCTTGGATCCGAGTGGGGAAAGGTAAAAAGCTTCTCGCTATATAGTTTGTTAATTGCTATTTTCAAATAAATAAGTTGGTGAAACGAGTATTGACCATTAAGCAATTTTTGTTAACCATAGCTTCTATCTTATTTTACGACAGGTTTCTGTGCTGGGAACCTCTGGTCTATCAGGGTCATATGTCGAGCAAAGGGCATAA

mRNA sequence

ATGGTGATTCTCAAATCATTATTGCGTTCTGTTCGCGCCAGATCTTACGTCATCGCCGGCGTCACGCACCGGAATTTACTACAGAGTCACCATCAGGCTGCCCGAAGTTTCTTCTCTCTGTCGTCTCATCGTTCTTCTTTCTCAGATTTTCAGCCGAGAGTTTCTTCTGCAGATTGTGGCTATCTATCTGGTGTAGCGCACGCTAGATTTTTTAGTGTTGATGTAGTTAATATGCCTACAATTGGAGATACCAAGCTTCAGAATGCTTTCAAGGATTTGATGGCTGCAAGTTGGGATAACCTTCCCGAGTCTGTTGTCTATGATGTAAAGGCAGCATTATCTGGAAGCACTGAAGACAAGGCTGGAAAGGAAATTGTGGAAAATGTTTTCAGAGCAGCTGAAGCGGCAGAGGATTTTGGTGATATACTTGTCAACTTGAAAATGGAAATTGATGATAGCATTGGTGTCAGTGGCGAGGATGTTAAGCCTTTGTCTGATGAGCTTAAGAAGGCACTACAAACAGTTTATGATCGCTATACAGCCTACTTGGATGCATTTGGTCCTGAGGAAAACTATCTGCGAAAGAAAGTTGAAACCGAGTTAGGAACTAAGATGATATACTTGAAAATGAGATGCAGTGGCCTTGGATCCGAGTGGGGAAAGGTTTCTGTGCTGGGAACCTCTGGTCTATCAGGGTCATATGTCGAGCAAAGGGCATAA

Coding sequence (CDS)

ATGGTGATTCTCAAATCATTATTGCGTTCTGTTCGCGCCAGATCTTACGTCATCGCCGGCGTCACGCACCGGAATTTACTACAGAGTCACCATCAGGCTGCCCGAAGTTTCTTCTCTCTGTCGTCTCATCGTTCTTCTTTCTCAGATTTTCAGCCGAGAGTTTCTTCTGCAGATTGTGGCTATCTATCTGGTGTAGCGCACGCTAGATTTTTTAGTGTTGATGTAGTTAATATGCCTACAATTGGAGATACCAAGCTTCAGAATGCTTTCAAGGATTTGATGGCTGCAAGTTGGGATAACCTTCCCGAGTCTGTTGTCTATGATGTAAAGGCAGCATTATCTGGAAGCACTGAAGACAAGGCTGGAAAGGAAATTGTGGAAAATGTTTTCAGAGCAGCTGAAGCGGCAGAGGATTTTGGTGATATACTTGTCAACTTGAAAATGGAAATTGATGATAGCATTGGTGTCAGTGGCGAGGATGTTAAGCCTTTGTCTGATGAGCTTAAGAAGGCACTACAAACAGTTTATGATCGCTATACAGCCTACTTGGATGCATTTGGTCCTGAGGAAAACTATCTGCGAAAGAAAGTTGAAACCGAGTTAGGAACTAAGATGATATACTTGAAAATGAGATGCAGTGGCCTTGGATCCGAGTGGGGAAAGGTTTCTGTGCTGGGAACCTCTGGTCTATCAGGGTCATATGTCGAGCAAAGGGCATAA

Protein sequence

MVILKSLLRSVRARSYVIAGVTHRNLLQSHHQAARSFFSLSSHRSSFSDFQPRVSSADCGYLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDKAGKEIVENVFRAAEAAEDFGDILVNLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYTAYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA
Homology
[Close]
BLAST of Carg11838 vs. NCBI nr
Match: KAG7029350.1 (Succinate dehydrogenase subunit 5, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 463.4 bits (1191), Expect = 1.2e-126
Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 0 

Query: 1   MVILKSLLRSVRARSYVIAGVTHRNLLQSHHQAARSFFSLSSHRSSFSDFQPRVSSADCG 60
           MVILKSLLRSVRARSYVIAGVTHRNLLQSHHQAARSFFSLSSHRSSFSDFQPRVSSADCG
Sbjct: 1   MVILKSLLRSVRARSYVIAGVTHRNLLQSHHQAARSFFSLSSHRSSFSDFQPRVSSADCG 60

Query: 61  YLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDK 120
           YLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDK
Sbjct: 61  YLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDK 120

Query: 121 AGKEIVENVFRAAEAAEDFGDILVNLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYT 180
           AGKEIVENVFRAAEAAEDFGDILVNLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYT
Sbjct: 121 AGKEIVENVFRAAEAAEDFGDILVNLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYT 180

Query: 181 AYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 240
           AYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA
Sbjct: 181 AYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 239

[Close]
BLAST of Carg11838 vs. NCBI nr
Match: XP_022962336.1 (succinate dehydrogenase subunit 5, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 459.9 bits (1182), Expect = 1.3e-125
Identity = 237/239 (99.16%), Postives = 238/239 (99.58%), Query Frame = 0 

Query: 1   MVILKSLLRSVRARSYVIAGVTHRNLLQSHHQAARSFFSLSSHRSSFSDFQPRVSSADCG 60
           MVIL+SLLRSVRARSYVIAGVTHRNLLQSHHQAARSFFSLSSHRSSFSDF PRVSSADCG
Sbjct: 1   MVILRSLLRSVRARSYVIAGVTHRNLLQSHHQAARSFFSLSSHRSSFSDFPPRVSSADCG 60

Query: 61  YLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDK 120
           YLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDK
Sbjct: 61  YLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDK 120

Query: 121 AGKEIVENVFRAAEAAEDFGDILVNLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYT 180
           AGKEIVENVFRAAEAAEDFGDILVNLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYT
Sbjct: 121 AGKEIVENVFRAAEAAEDFGDILVNLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYT 180

Query: 181 AYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 240
           AYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA
Sbjct: 181 AYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 239

[Close]
BLAST of Carg11838 vs. NCBI nr
Match: KAG6598386.1 (Succinate dehydrogenase subunit 5, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 453.8 bits (1166), Expect = 9.5e-124
Identity = 236/239 (98.74%), Postives = 237/239 (99.16%), Query Frame = 0 

Query: 1   MVILKSLLRSVRARSYVIAGVTHRNLLQSHHQAARSFFSLSSHRSSFSDFQPRVSSADCG 60
           MVIL+SLLRSVRARSYVIAGVTHRNLLQSHHQAARSFFSLSSHRSSFSDF PRVSS DCG
Sbjct: 1   MVILRSLLRSVRARSYVIAGVTHRNLLQSHHQAARSFFSLSSHRSSFSDFPPRVSS-DCG 60

Query: 61  YLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDK 120
           YLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDK
Sbjct: 61  YLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDK 120

Query: 121 AGKEIVENVFRAAEAAEDFGDILVNLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYT 180
           AGKEIVENVFRAAEAAEDFGDILVNLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYT
Sbjct: 121 AGKEIVENVFRAAEAAEDFGDILVNLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYT 180

Query: 181 AYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 240
           AYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA
Sbjct: 181 AYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 238

[Close]
BLAST of Carg11838 vs. NCBI nr
Match: XP_023546792.1 (succinate dehydrogenase subunit 5, mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 452.6 bits (1163), Expect = 2.1e-123
Identity = 234/239 (97.91%), Postives = 236/239 (98.74%), Query Frame = 0 

Query: 1   MVILKSLLRSVRARSYVIAGVTHRNLLQSHHQAARSFFSLSSHRSSFSDFQPRVSSADCG 60
           MVIL+SLLRSVRARSYVIAGVTHRNLLQSH QAARSFFSLSSHRSSFSDF  RVSSADCG
Sbjct: 1   MVILRSLLRSVRARSYVIAGVTHRNLLQSHRQAARSFFSLSSHRSSFSDFPLRVSSADCG 60

Query: 61  YLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDK 120
           YLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDK
Sbjct: 61  YLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDK 120

Query: 121 AGKEIVENVFRAAEAAEDFGDILVNLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYT 180
           AGKEIVENVFRAAEAAEDFGDIL+NLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYT
Sbjct: 121 AGKEIVENVFRAAEAAEDFGDILINLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYT 180

Query: 181 AYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 240
           AYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA
Sbjct: 181 AYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 239

[Close]
BLAST of Carg11838 vs. NCBI nr
Match: XP_022996467.1 (succinate dehydrogenase subunit 5, mitochondrial-like [Cucurbita maxima] >XP_022996468.1 succinate dehydrogenase subunit 5, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 448.7 bits (1153), Expect = 3.1e-122
Identity = 231/239 (96.65%), Postives = 235/239 (98.33%), Query Frame = 0 

Query: 1   MVILKSLLRSVRARSYVIAGVTHRNLLQSHHQAARSFFSLSSHRSSFSDFQPRVSSADCG 60
           MVIL+SLLRSVRARSYVIAGVTHRNLL+SHH AARSFFSL SHRSSFSDF  RVSSADCG
Sbjct: 1   MVILRSLLRSVRARSYVIAGVTHRNLLKSHHLAARSFFSLLSHRSSFSDFPLRVSSADCG 60

Query: 61  YLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDK 120
           YLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDK
Sbjct: 61  YLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDK 120

Query: 121 AGKEIVENVFRAAEAAEDFGDILVNLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYT 180
           AGKEIVENVFRAAEAAEDFGDIL+NLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYT
Sbjct: 121 AGKEIVENVFRAAEAAEDFGDILINLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYT 180

Query: 181 AYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 240
           AYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGK+SVLGTSGLSGSYVEQRA
Sbjct: 181 AYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKISVLGTSGLSGSYVEQRA 239

[Close]
BLAST of Carg11838 vs. ExPASy Swiss-Prot
Match: Q9SX77 (Succinate dehydrogenase subunit 5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDH5 PE=1 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 2.8e-62
Identity = 119/176 (67.61%), Postives = 143/176 (81.25%), Query Frame = 0 

Query: 64  GVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDKAGK 123
           G+   R FS DV +MP + D+ + NAFKDLMAA W  LP +VV D K A+S +T+DKAG+
Sbjct: 82  GMGQVRRFSEDVSHMPEMEDSDVLNAFKDLMAADWAELPSAVVKDAKTAISKNTDDKAGQ 141

Query: 124 EIVENVFRAAEAAEDFGDILVNLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYTAYL 183
           E ++NVFRAAEA E+FG IL ++KMEIDDSIG+SGE VKPL +++  AL+T Y RY  YL
Sbjct: 142 EALKNVFRAAEAVEEFGGILTSIKMEIDDSIGMSGEGVKPLPNDITDALRTAYQRYAEYL 201

Query: 184 DAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 240
           D+F PEE YL+KKVE ELGTKMI+LKMRCSGLGSEWGKV+VLGTSGLSGSYVEQRA
Sbjct: 202 DSFEPEEVYLKKKVEMELGTKMIHLKMRCSGLGSEWGKVTVLGTSGLSGSYVEQRA 257

[Close]
BLAST of Carg11838 vs. ExPASy Swiss-Prot
Match: Q0JDA2 (Succinate dehydrogenase subunit 5, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=SDH5 PE=1 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 2.3e-56
Identity = 104/171 (60.82%), Postives = 138/171 (80.70%), Query Frame = 0 

Query: 69  RFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDKAGKEIVEN 128
           R FS +  ++P I D ++++AFKDLMAASW  LP+S+V + K A S +T+DKAGKE + N
Sbjct: 61  RLFSSNEKHLPAISDPEVESAFKDLMAASWTGLPDSLVIEAKKAASKATDDKAGKEALLN 120

Query: 129 VFRAAEAAEDFGDILVNLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYTAYLDAFGP 188
           VFRAAEA E+FG +LV L+M +DD  G++GE+V PL   ++ A+++ Y RY  YL++FGP
Sbjct: 121 VFRAAEACEEFGGVLVTLRMALDDLCGITGENVGPLPGYIEDAVKSAYKRYMKYLESFGP 180

Query: 189 EENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 240
           EENYLRKKVE ELGTKMI+LKMRCSG+GSEWGK++++GTSG+SGSYVE RA
Sbjct: 181 EENYLRKKVENELGTKMIHLKMRCSGVGSEWGKITLIGTSGISGSYVELRA 231

[Close]
BLAST of Carg11838 vs. ExPASy TrEMBL
Match: A0A6J1HCU3 (succinate dehydrogenase subunit 5, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111462814 PE=4 SV=1)

HSP 1 Score: 459.9 bits (1182), Expect = 6.4e-126
Identity = 237/239 (99.16%), Postives = 238/239 (99.58%), Query Frame = 0 

Query: 1   MVILKSLLRSVRARSYVIAGVTHRNLLQSHHQAARSFFSLSSHRSSFSDFQPRVSSADCG 60
           MVIL+SLLRSVRARSYVIAGVTHRNLLQSHHQAARSFFSLSSHRSSFSDF PRVSSADCG
Sbjct: 1   MVILRSLLRSVRARSYVIAGVTHRNLLQSHHQAARSFFSLSSHRSSFSDFPPRVSSADCG 60

Query: 61  YLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDK 120
           YLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDK
Sbjct: 61  YLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDK 120

Query: 121 AGKEIVENVFRAAEAAEDFGDILVNLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYT 180
           AGKEIVENVFRAAEAAEDFGDILVNLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYT
Sbjct: 121 AGKEIVENVFRAAEAAEDFGDILVNLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYT 180

Query: 181 AYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 240
           AYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA
Sbjct: 181 AYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 239

[Close]
BLAST of Carg11838 vs. ExPASy TrEMBL
Match: A0A6J1KAU4 (succinate dehydrogenase subunit 5, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111491709 PE=4 SV=1)

HSP 1 Score: 448.7 bits (1153), Expect = 1.5e-122
Identity = 231/239 (96.65%), Postives = 235/239 (98.33%), Query Frame = 0 

Query: 1   MVILKSLLRSVRARSYVIAGVTHRNLLQSHHQAARSFFSLSSHRSSFSDFQPRVSSADCG 60
           MVIL+SLLRSVRARSYVIAGVTHRNLL+SHH AARSFFSL SHRSSFSDF  RVSSADCG
Sbjct: 1   MVILRSLLRSVRARSYVIAGVTHRNLLKSHHLAARSFFSLLSHRSSFSDFPLRVSSADCG 60

Query: 61  YLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDK 120
           YLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDK
Sbjct: 61  YLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDK 120

Query: 121 AGKEIVENVFRAAEAAEDFGDILVNLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYT 180
           AGKEIVENVFRAAEAAEDFGDIL+NLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYT
Sbjct: 121 AGKEIVENVFRAAEAAEDFGDILINLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYT 180

Query: 181 AYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 240
           AYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGK+SVLGTSGLSGSYVEQRA
Sbjct: 181 AYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKISVLGTSGLSGSYVEQRA 239

[Close]
BLAST of Carg11838 vs. ExPASy TrEMBL
Match: A0A0A0LP60 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360050 PE=4 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 1.9e-106
Identity = 204/238 (85.71%), Postives = 219/238 (92.02%), Query Frame = 0 

Query: 2   VILKSLLRSVRARSYVIAGVTHRNLLQSHHQAARSFFSLSSHRSSFSDFQPRVSSADCGY 61
           VIL+SLLRSVRARSY IAGVTHRNLLQS+HQ ARSFF LSSHR SFSD   RVSS DC Y
Sbjct: 5   VILRSLLRSVRARSYGIAGVTHRNLLQSNHQVARSFFYLSSHRPSFSDSPQRVSS-DCSY 64

Query: 62  LSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDKA 121
            SGV HAR+FS DVV+MPTI D KLQN FKDLMAASWD LPE+V+YDVK ALSGST+DKA
Sbjct: 65  PSGVGHARYFSADVVSMPTIEDPKLQNVFKDLMAASWDKLPEAVIYDVKTALSGSTDDKA 124

Query: 122 GKEIVENVFRAAEAAEDFGDILVNLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYTA 181
           GKEIVENVFRAAEAAE+FGD+L+NLKMEIDDSIG+SGE+VKPLSDELKKAL TV++RY A
Sbjct: 125 GKEIVENVFRAAEAAEEFGDMLINLKMEIDDSIGLSGENVKPLSDELKKALHTVHERYIA 184

Query: 182 YLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 240
           YLD+FGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA
Sbjct: 185 YLDSFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 241

[Close]
BLAST of Carg11838 vs. ExPASy TrEMBL
Match: A0A6J1KS18 (succinate dehydrogenase subunit 5, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111495971 PE=4 SV=1)

HSP 1 Score: 389.4 bits (999), Expect = 1.1e-104
Identity = 203/239 (84.94%), Postives = 220/239 (92.05%), Query Frame = 0 

Query: 1   MVILKSLLRSVRARSYVIAGVTHRNLLQSHHQAARSFFSLSSHRSSFSDFQPRVSSADCG 60
           MV+L+SLLRSVRA SY IAGV HR+LLQSH+QAAR+F  LSS RSSFSD   RV S DCG
Sbjct: 4   MVVLRSLLRSVRAGSYSIAGVRHRSLLQSHYQAARNFSHLSSPRSSFSDSPQRV-SYDCG 63

Query: 61  YLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDK 120
           YLSGV HARFFSVDV +MPTI D+KLQNAFKDLMAASWDNLPESVVYDVK ALSGST D+
Sbjct: 64  YLSGVGHARFFSVDVAHMPTIEDSKLQNAFKDLMAASWDNLPESVVYDVKVALSGSTNDE 123

Query: 121 AGKEIVENVFRAAEAAEDFGDILVNLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYT 180
           AGKEIVENVFRAAEA+E+FG IL +LKM+IDDSIG+SGEDVKPLSDELK ALQTV+DRYT
Sbjct: 124 AGKEIVENVFRAAEASEEFGGILTSLKMKIDDSIGLSGEDVKPLSDELKNALQTVHDRYT 183

Query: 181 AYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 240
           +YLDAFGPEENYL+KKVETELGTKMI+LKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA
Sbjct: 184 SYLDAFGPEENYLKKKVETELGTKMIHLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 241

[Close]
BLAST of Carg11838 vs. ExPASy TrEMBL
Match: A0A6J1CS25 (succinate dehydrogenase subunit 5, mitochondrial-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111014059 PE=4 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 1.8e-104
Identity = 201/239 (84.10%), Postives = 214/239 (89.54%), Query Frame = 0 

Query: 1   MVILKSLLRSVRARSYVIAGVTHRNLLQSHHQAARSFFSLSSHRSSFSDFQPRVSSADCG 60
           M+IL+SLLRSVR  SY +AGV HRNLLQSHHQAARS F LSSHRSS SD   RVSS DCG
Sbjct: 4   MMILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSLFHLSSHRSSVSDSLQRVSS-DCG 63

Query: 61  YLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDK 120
           Y SGV   RFFSVDVV+MPTI D+KLQN FKDLMA SWD LP S+VYDVKAALSGST+DK
Sbjct: 64  YPSGVGRVRFFSVDVVHMPTIEDSKLQNVFKDLMATSWDELPNSIVYDVKAALSGSTDDK 123

Query: 121 AGKEIVENVFRAAEAAEDFGDILVNLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYT 180
           AGKE+VENVFRAAEA E+FG IL+NLKM+IDDSIG+SGEDVKPLSDELK AL TV+DRYT
Sbjct: 124 AGKEVVENVFRAAEAVEEFGGILINLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDRYT 183

Query: 181 AYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 240
            YLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA
Sbjct: 184 TYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 241

[Close]
BLAST of Carg11838 vs. TAIR 10
Match: AT1G47420.1 (succinate dehydrogenase 5 )

HSP 1 Score: 240.0 bits (611), Expect = 2.0e-63
Identity = 119/176 (67.61%), Postives = 143/176 (81.25%), Query Frame = 0 

Query: 64  GVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDKAGK 123
           G+   R FS DV +MP + D+ + NAFKDLMAA W  LP +VV D K A+S +T+DKAG+
Sbjct: 82  GMGQVRRFSEDVSHMPEMEDSDVLNAFKDLMAADWAELPSAVVKDAKTAISKNTDDKAGQ 141

Query: 124 EIVENVFRAAEAAEDFGDILVNLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYTAYL 183
           E ++NVFRAAEA E+FG IL ++KMEIDDSIG+SGE VKPL +++  AL+T Y RY  YL
Sbjct: 142 EALKNVFRAAEAVEEFGGILTSIKMEIDDSIGMSGEGVKPLPNDITDALRTAYQRYAEYL 201

Query: 184 DAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 240
           D+F PEE YL+KKVE ELGTKMI+LKMRCSGLGSEWGKV+VLGTSGLSGSYVEQRA
Sbjct: 202 DSFEPEEVYLKKKVEMELGTKMIHLKMRCSGLGSEWGKVTVLGTSGLSGSYVEQRA 257

The following BLAST results are available for this feature:
BLAST of Carg11838 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7029350.11.2e-126100.00Succinate dehydrogenase subunit 5, mitochondrial, partial [Cucurbita argyrosperm... [more]
XP_022962336.11.3e-12599.16succinate dehydrogenase subunit 5, mitochondrial-like [Cucurbita moschata][more]
KAG6598386.19.5e-12498.74Succinate dehydrogenase subunit 5, mitochondrial, partial [Cucurbita argyrosperm... [more]
XP_023546792.12.1e-12397.91succinate dehydrogenase subunit 5, mitochondrial-like isoform X1 [Cucurbita pepo... [more]
XP_022996467.13.1e-12296.65succinate dehydrogenase subunit 5, mitochondrial-like [Cucurbita maxima] >XP_022... [more]
BLAST of Carg11838 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SX772.8e-6267.61Succinate dehydrogenase subunit 5, mitochondrial OS=Arabidopsis thaliana OX=3702... [more]
Q0JDA22.3e-5660.82Succinate dehydrogenase subunit 5, mitochondrial OS=Oryza sativa subsp. japonica... [more]
BLAST of Carg11838 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HCU36.4e-12699.16succinate dehydrogenase subunit 5, mitochondrial-like OS=Cucurbita moschata OX=3... [more]
A0A6J1KAU41.5e-12296.65succinate dehydrogenase subunit 5, mitochondrial-like OS=Cucurbita maxima OX=366... [more]
A0A0A0LP601.9e-10685.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360050 PE=4 SV=1[more]
A0A6J1KS181.1e-10484.94succinate dehydrogenase subunit 5, mitochondrial-like OS=Cucurbita maxima OX=366... [more]
A0A6J1CS251.8e-10484.10succinate dehydrogenase subunit 5, mitochondrial-like isoform X1 OS=Momordica ch... [more]
BLAST of Carg11838 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G47420.12.0e-6367.61succinate dehydrogenase 5 [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025397Succinate dehydrogenase subunit 5, mitochondrialPFAMPF14290DUF4370coord: 1..239
e-value: 3.3E-102
score: 341.4
IPR025397Succinate dehydrogenase subunit 5, mitochondrialPANTHERPTHR36139SUCCINATE DEHYDROGENASE SUBUNIT 5, MITOCHONDRIALcoord: 1..239
NoneNo IPR availablePANTHERPTHR36139:SF1SUCCINATE DEHYDROGENASE SUBUNIT 5, MITOCHONDRIALcoord: 1..239

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg11838-RACarg11838-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006099 tricarboxylic acid cycle
cellular_component GO:0045273 respiratory chain complex II