Carg11834 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg11834
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Uroporphyrinogen-III synthase
Location	Carg_Chr05: 881357 .. 884340 (+)
RNA-Seq Expression	Carg11834
Synteny	Carg11834

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAAAAGTTAGAATAGGTGTTGTTGGAGCTGGTACAGCTAACATTTTTGACGAAATGTTGCAATCATCAAACTTACTTGAAGTGGCGTTTGCACCCTCAAAAGGTAAGATGTATGTCAAAATCAAGTCTCGTGCATGATGCACATATATTCATTATTTGTTGATTGCATTTGTTTGCATGATGTTAATATTTTTAGCTATATCATTTACCTACTGTCTTAAGTCAAATAAGATGATGAAAAGATCTCAAGAAAGACAGTGAAGTAGTATGGCACATCAGAACTATCAAAACAACTCCAAAGAAATATGTCAAATGAATTAGATATTATTCGTGCCGGAAATTTTTATTCTTAAATCCTCACTCTGTTATGAACGTTGTTGAACAATCACAATTTGTCAGGGGTATTTGTATCTTCGCAGCAGGCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTTGAGAGAACATAGACGATTTATTATTCAATGTGTGTATACATTTGGATTTGATTAGAGTAAGAATCCTTATACAAAGATGCGTGGCTTTCCTACATATCTGTTGTTTATTATTATTCTTATTCTTATTATTGTTAGTATGATGATGATGATGATGATGATGATGATGATGATGGTGATGATGATGATTATTTGTTAGGATGTTGTCCTGCACATACATTATTTTAAATATTTGTCCAATTATCTATTTCAGCAATAGGCAAGGTCTTGGCTTCCGAGCTTCCGAAGTTAGGGAATACAAAATGCAGTGTCTTATATCCTGCTTCTACCAAAGCAAGCAATGATATTGGTATGCAACGTACTTTTTTTCTTTTACACTCTTGAGAGCTATTTTCATTAGATAGAGTGGAAACAATGATCTTTCTTTTCTCTCTCTTTTTTTTTTTTCTTTTTTTTTTCTCATGCAATAACTATAAGAAATTTTATTTGAACTGGAATTATTGTTACTAAATTGTTGCTTGATGGCTTGCAGCTATCAATTGTTTAAGGTTTACTTGATTAGCCACTCTTTGTGATAAGTCCAGTTTTACTTGGACCAGTAAAACCTAATTTCCACAGCTGAAAATTCAAAATACTTTGAATTAGATTAATAACATTTTAATGGCACTCCCTCAAATCAAGTACTGACATCTCTTTACTTTTGATTCATGTAAAATAAAAACACAAAATACGAACAATGTGAATAATTGCCAGGTTTTTTATGTTCTAATCACTTAAAAAATTGGGAACTTTTGTTCCTAAGAAATGTAAGGAAGTGGAAGTTATTTATTGAAGTACTTTAAATTTCAGAGATAGTGGTGCCTGAAACTAGATGCTGACTCTTGTTTCTTAAGTCAATACTTTTTCCTTTCTAGCAATATTTCATATTTCGTAGACTGTCATCACTCTTTGTGGTAGATAGTATATATTGTTTACATATATATTTTCCTCGTTTTATGCAAACTGTAGCAGATATCTGATATTCATGTCAAGTGATTTGTTTGCAAGTATATAGTAGCGGGCTTTTATCTGCTACTCGCTCTTTTTTTTTTCAAAAATAAAGTTTTAGTATTTGGTGGTCTCACTGTTGCACCGTAGTGTTGTTCCGTCTATTATAACTAAAAGCAAAATAATGGCTTTTAGAAATAACCTTGGTATCCGTCTTTGCTATCTGTACAGAGGAAGGCCTTTCAAATCGTGGATTTGAGGTCATGAGGCTCAACACCTATACTACGGTAAAGTATTCATGTGCCTTAGTATAACACCGAAAATTTAAAGATGAACCACCCTGATTTAACATTGCATGCGTTTTTTAGAGGTGTATACATCTGCTTGATCTTGAGTGAAGTTAATAAATATCATTTACTACGCCAATCTAGAGGGAATCAGTAAAGCGAGTTACAGCATAACTAATGATAGATGCTTAAAAGAACTATATATGGGACTTTCTTTAAGTGTATAGAGGGAATCCTTGGGACAATTAGCTGTCATTGGGGAAAGAGATTTGTGGAAGATACTCGGCGAACCCGTACCTAACGTATAGGAGCAATTTACAAGGAAATTGTGAACTGCACAACTAATTAAAAAATTCAAATTAAATTGAATTACATCGAGTGCGTAATATATATTGCCTTCCAGGAGTAGTCTTGAATCAGAATACCTTGTTCCCTGCACCATTCTCTTAGTAACCTTGACAGGCTATGTGAAACATTACGGTCCACTCAAACATTATTGATTGGTACCTTTCAGTCACCTGTTGATTACGTTGATCAATTCATTCTCGAGCAAGCACGTTCATTGCCTGTTGTCACAGTGGCTTCACCTTCTGCAATTCGGTATGAACTGTTTTTTTCCTTTTTCTTTTTTGCATGTCTCACTTTTGACTATTTGATTTCTTTAGTTTTCTCATCCGGGGGAGAGAGAATTGTAATGTTAATTTTTTTGCACTATCTTGGCATTGATCATTTATCTGTCGCAACAGCGCATGGGTCAACCTTATTTCCGAGCCGAAGGAGTGGGAAAAATCACTTGCCTGTATTGGGGAAACAACTGCAGCAGCCGCAAAAAGATTAGGATTGAAAAACATATACTACCCCAAGAATCCTGGATTGGAAGGGTAACTTGTTCCGTACTTCCAACTTAACAATCATCTGTTGATGCATTTCTTTTCTTAGTTCAGATTCCATGCTTAACAATCTTTTCAATAGATCGAATATATTGACTGCTGAATCTACAAATTATGGTAACTGGGATGCAGGTGGGTTGACAGTATATTGGAAGCGCTAAGATCAGAAGCTCAAGTTGTTTGATCAAAGCATCTCAAACATCAGGTCGTCATGGAATGATCACTGTCCATTTGCCCGAGTACTTCGAGGTTAGTCAAACGGAACTTTTCTCAGATAATTAATAAACATTTTGGTTCTTCTAGTCTCTTTATTGTTGATAGAATGCAATTTGTAAATTCTCAATGAATGGGATAGGTCCGTGTAGT

mRNA sequence

ATGCCAAAAGTTAGAATAGGTGTTGTTGGAGCTGGTACAGCTAACATTTTTGACGAAATGTTGCAATCATCAAACTTACTTGAAGTGGCGTTTGCACCCTCAAAAGCAATAGGCAAGGTCTTGGCTTCCGAGCTTCCGAAGTTAGGGAATACAAAATGCAGTGTCTTATATCCTGCTTCTACCAAAGCAAGCAATGATATTGAGGAAGGCCTTTCAAATCGTGGATTTGAGGTCATGAGGCTCAACACCTATACTACGTCACCTGTTGATTACGTTGATCAATTCATTCTCGAGCAAGCACGTTCATTGCCTGTTGTCACAGTGGCTTCACCTTCTGCAATTCGCGCATGGGTCAACCTTATTTCCGAGCCGAAGGAGTGGGAAAAATCACTTGCCTGTATTGGGGAAACAACTGCAGCAGCCGCAAAAAGATTAGGATTGAAAAACATATACTACCCCAAGAATCCTGGATTGGAAGGGTGGGTTGACAGTATATTGGAAGCGCTAAGATCAGAAGCTCAAGTTGTTTGATCAAAGCATCTCAAACATCAGGTCGTCATGGAATGATCACTGTCCATTTGCCCGAGTACTTCGAGGTTAGTCAAACGGAACTTTTCTCAGATAATTAATAAACATTTTGGTTCTTCTAGTCTCTTTATTGTTGATAGAATGCAATTTGTAAATTCTCAATGAATGGGATAGGTCCGTGTAGT

Coding sequence (CDS)

ATGCCAAAAGTTAGAATAGGTGTTGTTGGAGCTGGTACAGCTAACATTTTTGACGAAATGTTGCAATCATCAAACTTACTTGAAGTGGCGTTTGCACCCTCAAAAGCAATAGGCAAGGTCTTGGCTTCCGAGCTTCCGAAGTTAGGGAATACAAAATGCAGTGTCTTATATCCTGCTTCTACCAAAGCAAGCAATGATATTGAGGAAGGCCTTTCAAATCGTGGATTTGAGGTCATGAGGCTCAACACCTATACTACGTCACCTGTTGATTACGTTGATCAATTCATTCTCGAGCAAGCACGTTCATTGCCTGTTGTCACAGTGGCTTCACCTTCTGCAATTCGCGCATGGGTCAACCTTATTTCCGAGCCGAAGGAGTGGGAAAAATCACTTGCCTGTATTGGGGAAACAACTGCAGCAGCCGCAAAAAGATTAGGATTGAAAAACATATACTACCCCAAGAATCCTGGATTGGAAGGGTGGGTTGACAGTATATTGGAAGCGCTAAGATCAGAAGCTCAAGTTGTTTGA

Protein sequence

MPKVRIGVVGAGTANIFDEMLQSSNLLEVAFAPSKAIGKVLASELPKLGNTKCSVLYPASTKASNDIEEGLSNRGFEVMRLNTYTTSPVDYVDQFILEQARSLPVVTVASPSAIRAWVNLISEPKEWEKSLACIGETTAAAAKRLGLKNIYYPKNPGLEGWVDSILEALRSEAQVV

Homology

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BLAST of Carg11834 vs. NCBI nr
Match: KAG6598391.1 (Uroporphyrinogen-III synthase, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 349.0 bits (894), Expect = 2.4e-92
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MPKVRIGVVGAGTANIFDEMLQSSNLLEVAFAPSKAIGKVLASELPKLGNTKCSVLYPAS 60
           MPKVRIGVVGAGTANIFDEMLQSSNLLEVAFAPSKAIGKVLASELPKLGNTKCSVLYPAS
Sbjct: 130 MPKVRIGVVGAGTANIFDEMLQSSNLLEVAFAPSKAIGKVLASELPKLGNTKCSVLYPAS 189

Query: 61  TKASNDIEEGLSNRGFEVMRLNTYTTSPVDYVDQFILEQARSLPVVTVASPSAIRAWVNL 120
           TKASNDIEEGLSNRGFEVMRLNTYTTSPVDYVDQFILEQARSLPVVTVASPSAIRAWVNL
Sbjct: 190 TKASNDIEEGLSNRGFEVMRLNTYTTSPVDYVDQFILEQARSLPVVTVASPSAIRAWVNL 249

Query: 121 ISEPKEWEKSLACIGETTAAAAKRLGLKNIYYPKNPGLEGWVDSILEALRSEAQVV 177
           ISEPKEWEKSLACIGETTAAAAKRLGLKNIYYPKNPGLEGWVDSILEALRSEAQVV
Sbjct: 250 ISEPKEWEKSLACIGETTAAAAKRLGLKNIYYPKNPGLEGWVDSILEALRSEAQVV 305

[Close]

BLAST of Carg11834 vs. NCBI nr
Match: KAG7029354.1 (Uroporphyrinogen-III synthase, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 349.0 bits (894), Expect = 2.4e-92
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MPKVRIGVVGAGTANIFDEMLQSSNLLEVAFAPSKAIGKVLASELPKLGNTKCSVLYPAS 60
           MPKVRIGVVGAGTANIFDEMLQSSNLLEVAFAPSKAIGKVLASELPKLGNTKCSVLYPAS
Sbjct: 1   MPKVRIGVVGAGTANIFDEMLQSSNLLEVAFAPSKAIGKVLASELPKLGNTKCSVLYPAS 60

Query: 61  TKASNDIEEGLSNRGFEVMRLNTYTTSPVDYVDQFILEQARSLPVVTVASPSAIRAWVNL 120
           TKASNDIEEGLSNRGFEVMRLNTYTTSPVDYVDQFILEQARSLPVVTVASPSAIRAWVNL
Sbjct: 61  TKASNDIEEGLSNRGFEVMRLNTYTTSPVDYVDQFILEQARSLPVVTVASPSAIRAWVNL 120

Query: 121 ISEPKEWEKSLACIGETTAAAAKRLGLKNIYYPKNPGLEGWVDSILEALRSEAQVV 177
           ISEPKEWEKSLACIGETTAAAAKRLGLKNIYYPKNPGLEGWVDSILEALRSEAQVV
Sbjct: 121 ISEPKEWEKSLACIGETTAAAAKRLGLKNIYYPKNPGLEGWVDSILEALRSEAQVV 176

[Close]

BLAST of Carg11834 vs. NCBI nr
Match: XP_022962039.1 (uroporphyrinogen-III synthase, chloroplastic-like [Cucurbita moschata] >XP_022962040.1 uroporphyrinogen-III synthase, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 347.4 bits (890), Expect = 7.1e-92
Identity = 175/176 (99.43%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MPKVRIGVVGAGTANIFDEMLQSSNLLEVAFAPSKAIGKVLASELPKLGNTKCSVLYPAS 60
           MPKVRIGVVGAGTANIFDE+LQSSNLLEVAFAPSKAIGKVLASELPKLGNTKCSVLYPAS
Sbjct: 145 MPKVRIGVVGAGTANIFDEVLQSSNLLEVAFAPSKAIGKVLASELPKLGNTKCSVLYPAS 204

Query: 61  TKASNDIEEGLSNRGFEVMRLNTYTTSPVDYVDQFILEQARSLPVVTVASPSAIRAWVNL 120
           TKASNDIEEGLSNRGFEVMRLNTYTTSPVDYVDQFILEQARSLPVVTVASPSAIRAWVNL
Sbjct: 205 TKASNDIEEGLSNRGFEVMRLNTYTTSPVDYVDQFILEQARSLPVVTVASPSAIRAWVNL 264

Query: 121 ISEPKEWEKSLACIGETTAAAAKRLGLKNIYYPKNPGLEGWVDSILEALRSEAQVV 177
           ISEPKEWEKSLACIGETTAAAAKRLGLKNIYYPKNPGLEGWVDSILEALRSEAQVV
Sbjct: 265 ISEPKEWEKSLACIGETTAAAAKRLGLKNIYYPKNPGLEGWVDSILEALRSEAQVV 320

[Close]

BLAST of Carg11834 vs. NCBI nr
Match: XP_022996969.1 (uroporphyrinogen-III synthase, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 346.3 bits (887), Expect = 1.6e-91
Identity = 174/176 (98.86%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MPKVRIGVVGAGTANIFDEMLQSSNLLEVAFAPSKAIGKVLASELPKLGNTKCSVLYPAS 60
           MPKVRIGVVGAGTANIFDE+LQSSNLLEVAFAPSKAIGKVLASELPKLGNTKCSVLYPAS
Sbjct: 145 MPKVRIGVVGAGTANIFDEVLQSSNLLEVAFAPSKAIGKVLASELPKLGNTKCSVLYPAS 204

Query: 61  TKASNDIEEGLSNRGFEVMRLNTYTTSPVDYVDQFILEQARSLPVVTVASPSAIRAWVNL 120
           TKASNDIEEGLSNRGFEVMRLNTYTT+PVDYVDQFILEQARSLPVVTVASPSAIRAWVNL
Sbjct: 205 TKASNDIEEGLSNRGFEVMRLNTYTTAPVDYVDQFILEQARSLPVVTVASPSAIRAWVNL 264

Query: 121 ISEPKEWEKSLACIGETTAAAAKRLGLKNIYYPKNPGLEGWVDSILEALRSEAQVV 177
           ISEPKEWEKSLACIGETTAAAAKRLGLKNIYYPKNPGLEGWVDSILEALRSEAQVV
Sbjct: 265 ISEPKEWEKSLACIGETTAAAAKRLGLKNIYYPKNPGLEGWVDSILEALRSEAQVV 320

[Close]

BLAST of Carg11834 vs. NCBI nr
Match: XP_023547155.1 (uroporphyrinogen-III synthase, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 340.9 bits (873), Expect = 6.6e-90
Identity = 172/176 (97.73%), Postives = 174/176 (98.86%), Query Frame = 0


Query: 1   MPKVRIGVVGAGTANIFDEMLQSSNLLEVAFAPSKAIGKVLASELPKLGNTKCSVLYPAS 60
           MPKVRIGVVGAGTANIFDE+LQSSNLLEVAFAPSKAIGKVLASELPKLGNTKCSVLYPAS
Sbjct: 146 MPKVRIGVVGAGTANIFDEVLQSSNLLEVAFAPSKAIGKVLASELPKLGNTKCSVLYPAS 205

Query: 61  TKASNDIEEGLSNRGFEVMRLNTYTTSPVDYVDQFILEQARSLPVVTVASPSAIRAWVNL 120
           TKASNDIEE LSNRGFEVMRLNTYTT+PVDYVDQFILEQARSLPVVTVASPSAI AWVNL
Sbjct: 206 TKASNDIEEVLSNRGFEVMRLNTYTTAPVDYVDQFILEQARSLPVVTVASPSAIHAWVNL 265

Query: 121 ISEPKEWEKSLACIGETTAAAAKRLGLKNIYYPKNPGLEGWVDSILEALRSEAQVV 177
           ISEPKEWEKSLACIGETTAAAAKRLGLKNIYYPKNPGLEGWVDSILEALRSEAQVV
Sbjct: 266 ISEPKEWEKSLACIGETTAAAAKRLGLKNIYYPKNPGLEGWVDSILEALRSEAQVV 321

[Close]

BLAST of Carg11834 vs. ExPASy Swiss-Prot
Match: O48721 (Uroporphyrinogen-III synthase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=UROS PE=2 SV=2)

HSP 1 Score: 232.6 bits (592), Expect = 3.3e-60
Identity = 114/173 (65.90%), Postives = 142/173 (82.08%), Query Frame = 0


Query: 2   PKVRIGVVGAGTANIFDEMLQSSN-LLEVAFAPSKAIGKVLASELPKLGNTKCSVLYPAS 61
           P+V+IGVVGAGTA +F+E ++S++ LL VAF PSKA GKVLASELP+    + SVLYPAS
Sbjct: 140 PEVQIGVVGAGTARVFEEAMKSADGLLHVAFTPSKATGKVLASELPEKVGKRSSVLYPAS 199

Query: 62  TKASNDIEEGLSNRGFEVMRLNTYTTSPVDYVDQFILEQARSLPVVTVASPSAIRAWVNL 121
            KA NDI EGLS RGFEV+RLNTYTT PV  VD  +L+QA S PV++VASPSA+RAW++L
Sbjct: 200 LKAGNDIVEGLSKRGFEVVRLNTYTTVPVQSVDTVLLQQALSAPVLSVASPSAVRAWLHL 259

Query: 122 ISEPKEWEKSLACIGETTAAAAKRLGLKNIYYPKNPGLEGWVDSILEALRSEA 174
           I   ++W   +ACIGETTA+AA+RLGLKN+YYP+ PGLEGWV+SI+EAL + A
Sbjct: 260 IQNEEQWSNYVACIGETTASAARRLGLKNVYYPEKPGLEGWVESIMEALGAHA 312

[Close]

BLAST of Carg11834 vs. ExPASy Swiss-Prot
Match: Q10QR9 (Uroporphyrinogen-III synthase, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=UROS PE=2 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 1.6e-59
Identity = 114/174 (65.52%), Postives = 136/174 (78.16%), Query Frame = 0


Query: 2   PKVRIGVVGAGTANIFDEMLQ-SSNLLEVAFAPSKAIGKVLASELPKLGNTKCSVLYPAS 61
           PKVRI VVGAGT  +FDE++Q +   LEVAF+PSKA+GK LASELP+   T C VLYPAS
Sbjct: 122 PKVRIAVVGAGTERVFDEVIQYNDGSLEVAFSPSKAMGKFLASELPRTTETTCKVLYPAS 181

Query: 62  TKASNDIEEGLSNRGFEVMRLNTYTTSPVDYVDQFILEQARSLPVVTVASPSAIRAWVNL 121
            KA ++I+ GLSNRGFEV RLNTYTT  V  VD  IL+ A S PVV VASPSA+RAW+NL
Sbjct: 182 AKAGHEIQNGLSNRGFEVTRLNTYTTVSVQDVDPLILKPALSAPVVAVASPSALRAWLNL 241

Query: 122 ISEPKEWEKSLACIGETTAAAAKRLGLKNIYYPKNPGLEGWVDSILEALRSEAQ 175
            S+   W  ++ACIGETTA+AAK+ GLK+IYYP  PGL+GWV+SILEALR+  Q
Sbjct: 242 ASQVDNWGNAIACIGETTASAAKKFGLKSIYYPTTPGLDGWVESILEALRAHGQ 295

[Close]

BLAST of Carg11834 vs. ExPASy TrEMBL
Match: A0A6J1HDZ7 (Uroporphyrinogen-III synthase OS=Cucurbita moschata OX=3662 GN=LOC111462623 PE=3 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 3.4e-92
Identity = 175/176 (99.43%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MPKVRIGVVGAGTANIFDEMLQSSNLLEVAFAPSKAIGKVLASELPKLGNTKCSVLYPAS 60
           MPKVRIGVVGAGTANIFDE+LQSSNLLEVAFAPSKAIGKVLASELPKLGNTKCSVLYPAS
Sbjct: 145 MPKVRIGVVGAGTANIFDEVLQSSNLLEVAFAPSKAIGKVLASELPKLGNTKCSVLYPAS 204

Query: 61  TKASNDIEEGLSNRGFEVMRLNTYTTSPVDYVDQFILEQARSLPVVTVASPSAIRAWVNL 120
           TKASNDIEEGLSNRGFEVMRLNTYTTSPVDYVDQFILEQARSLPVVTVASPSAIRAWVNL
Sbjct: 205 TKASNDIEEGLSNRGFEVMRLNTYTTSPVDYVDQFILEQARSLPVVTVASPSAIRAWVNL 264

Query: 121 ISEPKEWEKSLACIGETTAAAAKRLGLKNIYYPKNPGLEGWVDSILEALRSEAQVV 177
           ISEPKEWEKSLACIGETTAAAAKRLGLKNIYYPKNPGLEGWVDSILEALRSEAQVV
Sbjct: 265 ISEPKEWEKSLACIGETTAAAAKRLGLKNIYYPKNPGLEGWVDSILEALRSEAQVV 320

[Close]

BLAST of Carg11834 vs. ExPASy TrEMBL
Match: A0A6J1KA58 (Uroporphyrinogen-III synthase OS=Cucurbita maxima OX=3661 GN=LOC111492039 PE=3 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 7.6e-92
Identity = 174/176 (98.86%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MPKVRIGVVGAGTANIFDEMLQSSNLLEVAFAPSKAIGKVLASELPKLGNTKCSVLYPAS 60
           MPKVRIGVVGAGTANIFDE+LQSSNLLEVAFAPSKAIGKVLASELPKLGNTKCSVLYPAS
Sbjct: 145 MPKVRIGVVGAGTANIFDEVLQSSNLLEVAFAPSKAIGKVLASELPKLGNTKCSVLYPAS 204

Query: 61  TKASNDIEEGLSNRGFEVMRLNTYTTSPVDYVDQFILEQARSLPVVTVASPSAIRAWVNL 120
           TKASNDIEEGLSNRGFEVMRLNTYTT+PVDYVDQFILEQARSLPVVTVASPSAIRAWVNL
Sbjct: 205 TKASNDIEEGLSNRGFEVMRLNTYTTAPVDYVDQFILEQARSLPVVTVASPSAIRAWVNL 264

Query: 121 ISEPKEWEKSLACIGETTAAAAKRLGLKNIYYPKNPGLEGWVDSILEALRSEAQVV 177
           ISEPKEWEKSLACIGETTAAAAKRLGLKNIYYPKNPGLEGWVDSILEALRSEAQVV
Sbjct: 265 ISEPKEWEKSLACIGETTAAAAKRLGLKNIYYPKNPGLEGWVDSILEALRSEAQVV 320

[Close]

BLAST of Carg11834 vs. ExPASy TrEMBL
Match: A0A0A0LLB2 (Uroporphyrinogen-III synthase OS=Cucumis sativus OX=3659 GN=Csa_2G360600 PE=3 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 1.6e-86
Identity = 164/176 (93.18%), Postives = 171/176 (97.16%), Query Frame = 0


Query: 1   MPKVRIGVVGAGTANIFDEMLQSSNLLEVAFAPSKAIGKVLASELPKLGNTKCSVLYPAS 60
           MPKVRIGVVGAGTANIF+E+LQSS LLEVAFAPSKAIGKVLASELPKLGNTKCSVLYPAS
Sbjct: 131 MPKVRIGVVGAGTANIFEEVLQSSKLLEVAFAPSKAIGKVLASELPKLGNTKCSVLYPAS 190

Query: 61  TKASNDIEEGLSNRGFEVMRLNTYTTSPVDYVDQFILEQARSLPVVTVASPSAIRAWVNL 120
           TKASNDIEE LSNRGFEV RLNTYTT+PVDYVDQ ILEQARSLPVVTVASPSA+RAWVNL
Sbjct: 191 TKASNDIEECLSNRGFEVTRLNTYTTAPVDYVDQTILEQARSLPVVTVASPSAVRAWVNL 250

Query: 121 ISEPKEWEKSLACIGETTAAAAKRLGLKNIYYPKNPGLEGWVDSILEALRSEAQVV 177
           IS+PKEW+KSLACIGETTAAAA RLGLKN+YYPKNPGLEGWVDSILEALRSEAQVV
Sbjct: 251 ISDPKEWDKSLACIGETTAAAANRLGLKNVYYPKNPGLEGWVDSILEALRSEAQVV 306

[Close]

BLAST of Carg11834 vs. ExPASy TrEMBL
Match: A0A5A7V583 (Uroporphyrinogen-III synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00010 PE=3 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 1.8e-85
Identity = 161/176 (91.48%), Postives = 170/176 (96.59%), Query Frame = 0


Query: 1   MPKVRIGVVGAGTANIFDEMLQSSNLLEVAFAPSKAIGKVLASELPKLGNTKCSVLYPAS 60
           MPKVRIGVVGAGTANIF+E+LQSS LLEVAFAPSKAIGKVLASELPKLGNTKCSVLYPAS
Sbjct: 157 MPKVRIGVVGAGTANIFEEVLQSSKLLEVAFAPSKAIGKVLASELPKLGNTKCSVLYPAS 216

Query: 61  TKASNDIEEGLSNRGFEVMRLNTYTTSPVDYVDQFILEQARSLPVVTVASPSAIRAWVNL 120
           TKASNDIEE LSNRGFEV RLNTYTT+PVDYVDQ ILEQARSLPVVTVASPSA+RAWVNL
Sbjct: 217 TKASNDIEECLSNRGFEVTRLNTYTTAPVDYVDQTILEQARSLPVVTVASPSAVRAWVNL 276

Query: 121 ISEPKEWEKSLACIGETTAAAAKRLGLKNIYYPKNPGLEGWVDSILEALRSEAQVV 177
           I +PKEW+KSLACIGETTAAAA +LGLKN+YYPKNPGLEGWVDSILEALRSEAQ+V
Sbjct: 277 IPDPKEWDKSLACIGETTAAAANKLGLKNVYYPKNPGLEGWVDSILEALRSEAQIV 332

[Close]

BLAST of Carg11834 vs. ExPASy TrEMBL
Match: A0A1S3BBN0 (Uroporphyrinogen-III synthase OS=Cucumis melo OX=3656 GN=LOC103487917 PE=3 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 5.3e-85
Identity = 161/176 (91.48%), Postives = 169/176 (96.02%), Query Frame = 0


Query: 1   MPKVRIGVVGAGTANIFDEMLQSSNLLEVAFAPSKAIGKVLASELPKLGNTKCSVLYPAS 60
           MPKVRIGVVGAGTANIF+E+LQSS LLEVAFAPSKAIGKVLASELPKLGNTKCSVLYPAS
Sbjct: 132 MPKVRIGVVGAGTANIFEEVLQSSKLLEVAFAPSKAIGKVLASELPKLGNTKCSVLYPAS 191

Query: 61  TKASNDIEEGLSNRGFEVMRLNTYTTSPVDYVDQFILEQARSLPVVTVASPSAIRAWVNL 120
           TKASNDIEE LSNRGFEV RLNTYTT+PVDYVDQ I EQARSLPVVTVASPSA+RAWVNL
Sbjct: 192 TKASNDIEECLSNRGFEVTRLNTYTTAPVDYVDQTIHEQARSLPVVTVASPSAVRAWVNL 251

Query: 121 ISEPKEWEKSLACIGETTAAAAKRLGLKNIYYPKNPGLEGWVDSILEALRSEAQVV 177
           I +PKEW+KSLACIGETTAAAA RLGLKN+YYPKNPGLEGWVDSILEALRSEAQ+V
Sbjct: 252 IPDPKEWDKSLACIGETTAAAANRLGLKNVYYPKNPGLEGWVDSILEALRSEAQIV 307

[Close]

BLAST of Carg11834 vs. TAIR 10
Match: AT2G26540.1 (uroporphyrinogen-III synthase family protein )

HSP 1 Score: 232.6 bits (592), Expect = 2.4e-61
Identity = 114/173 (65.90%), Postives = 142/173 (82.08%), Query Frame = 0


Query: 2   PKVRIGVVGAGTANIFDEMLQSSN-LLEVAFAPSKAIGKVLASELPKLGNTKCSVLYPAS 61
           P+V+IGVVGAGTA +F+E ++S++ LL VAF PSKA GKVLASELP+    + SVLYPAS
Sbjct: 140 PEVQIGVVGAGTARVFEEAMKSADGLLHVAFTPSKATGKVLASELPEKVGKRSSVLYPAS 199

Query: 62  TKASNDIEEGLSNRGFEVMRLNTYTTSPVDYVDQFILEQARSLPVVTVASPSAIRAWVNL 121
            KA NDI EGLS RGFEV+RLNTYTT PV  VD  +L+QA S PV++VASPSA+RAW++L
Sbjct: 200 LKAGNDIVEGLSKRGFEVVRLNTYTTVPVQSVDTVLLQQALSAPVLSVASPSAVRAWLHL 259

Query: 122 ISEPKEWEKSLACIGETTAAAAKRLGLKNIYYPKNPGLEGWVDSILEALRSEA 174
           I   ++W   +ACIGETTA+AA+RLGLKN+YYP+ PGLEGWV+SI+EAL + A
Sbjct: 260 IQNEEQWSNYVACIGETTASAARRLGLKNVYYPEKPGLEGWVESIMEALGAHA 312

The following BLAST results are available for this feature:

BLAST of Carg11834 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6598391.1	2.4e-92	100.00	Uroporphyrinogen-III synthase, chloroplastic, partial [Cucurbita argyrosperma su...	[more]
KAG7029354.1	2.4e-92	100.00	Uroporphyrinogen-III synthase, chloroplastic, partial [Cucurbita argyrosperma su...	[more]
XP_022962039.1	7.1e-92	99.43	uroporphyrinogen-III synthase, chloroplastic-like [Cucurbita moschata] >XP_02296...	[more]
XP_022996969.1	1.6e-91	98.86	uroporphyrinogen-III synthase, chloroplastic-like [Cucurbita maxima]	[more]
XP_023547155.1	6.6e-90	97.73	uroporphyrinogen-III synthase, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg11834 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O48721	3.3e-60	65.90	Uroporphyrinogen-III synthase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q10QR9	1.6e-59	65.52	Uroporphyrinogen-III synthase, chloroplastic OS=Oryza sativa subsp. japonica OX=...	[more]

BLAST of Carg11834 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HDZ7	3.4e-92	99.43	Uroporphyrinogen-III synthase OS=Cucurbita moschata OX=3662 GN=LOC111462623 PE=3...	[more]
A0A6J1KA58	7.6e-92	98.86	Uroporphyrinogen-III synthase OS=Cucurbita maxima OX=3661 GN=LOC111492039 PE=3 S...	[more]
A0A0A0LLB2	1.6e-86	93.18	Uroporphyrinogen-III synthase OS=Cucumis sativus OX=3659 GN=Csa_2G360600 PE=3 SV...	[more]
A0A5A7V583	1.8e-85	91.48	Uroporphyrinogen-III synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A1S3BBN0	5.3e-85	91.48	Uroporphyrinogen-III synthase OS=Cucumis melo OX=3656 GN=LOC103487917 PE=3 SV=1	[more]

BLAST of Carg11834 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G26540.1	2.4e-61	65.90	uroporphyrinogen-III synthase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036108	Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily	GENE3D	3.40.50.10090		coord: 79..170 e-value: 1.9E-9 score: 39.3
IPR036108	Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily	GENE3D	3.40.50.10090		coord: 1..78 e-value: 3.3E-11 score: 45.2
IPR036108	Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily	SUPERFAMILY	69618	HemD-like	coord: 3..168
IPR003754	Tetrapyrrole biosynthesis, uroporphyrinogen III synthase	PFAM	PF02602	HEM4	coord: 3..162 e-value: 6.8E-32 score: 110.7
IPR003754	Tetrapyrrole biosynthesis, uroporphyrinogen III synthase	CDD	cd06578	HemD	coord: 2..165 e-value: 1.21473E-28 score: 104.311
IPR039793	Uroporphyrinogen-III synthase	PANTHER	PTHR38042	UROPORPHYRINOGEN-III SYNTHASE, CHLOROPLASTIC	coord: 2..174

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11834-RA	Carg11834-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006782	protoporphyrinogen IX biosynthetic process
biological_process	GO:0006780	uroporphyrinogen III biosynthetic process
biological_process	GO:0033014	tetrapyrrole biosynthetic process
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0004852	uroporphyrinogen-III synthase activity