Carg11783 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg11783
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr05: 1127168 .. 1130165 (+)
RNA-Seq ExpressionCarg11783
SyntenyCarg11783
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATAACGCCATTGTACCTGTGAACACGTTCCAATCCCATTCGATTTCGGTCATTATTCAAGCTCGTAATTTGCTAGTTGCCTTCTGATTTTGATCGTCTTCTGTTGGCAGGTATGAAAAAGAAGGGAAATCAACCAAGAAACTAGAAGCTTTTTAAAAAGAGATGTAACTGGCATAGTAGCGGGCACACTGCAGGCTGCAGTGTGATGCCTCAGCGCGTCAAGATGATCGGAGCCCTGATTTGATGAAGGGCTAAACTGTAGGGGGGGAGCCATGTGTAGTATAATGTTACGTTCTGAAGGGGAGTTGGGCATTCAAGGAAAGGACAAGAAGACAAAAGACAACAAGGGACATAGTAGGGGGAAAATAAAATCGAGGGATTGAGGACGATATCATGCTTCTGATATAACCTCATTTTCCCTTCCATTCTTACCTTCATGTTTATATGGATTTCATCAATTTATTAGATAATTGAAGTGAAATTTGACTCCTAGGATCCCTACTCTGTCCTTGTTATTGATATCCATTTAAAATTCAAGTATTTAAGTATTTTTTTTTCGGGTACTAAGATTAAGTACAAGGACAAACATCAAAATATTGATTATTATCTCATAAAGGTAAATTACTTAACAAAACTAAGGGCATTTCAAACACAATGGATGACACCTTTGGGCCATTTTAAACATTTTGATATCACATTGTTCGATGGACCTTAGAGCTCACGGAGTAAAAGATCATTAACAAGGGTGTTCTAGTGTGTCATAGATTTTTATCTAAGACTAGCATCATTTGATGATGCCACCTGAATCACTAGAAAGACGTAAAGCATATAGCTAACCCACCTGAATCACTAGAAAGATATAAAGCATTATAGCTAACCCACCTGAATCACTAGAAAGATATAAAGCATATAGCTAACCCAATAACAAAAGTTTACTACGGCCGGAGCAGGCTACCATTAGAAGAGTCTATTTACCCTTGTTTCAGTAGCGACCGTTATGACTCTGTATAATATGACAGGTCATTACAGTGTGAGAGATGAATACATATAGTCAATCTCTTACAAGAAAACCCTCCGTCGGTACTGAAACAATATTACATAACTTCCTAACATTTAGGATCTGATCCTGTAGCAAGAAAACAGAAGTGAGGACAACAGCTAGCTCAAAAGGCAAATTGTACAAAGGTCCTATGATAAGGTTGCATAACATTCCTGAAGAACAAATAGAAAGTTGTGATATAAATTTACTTCGACGTAAAAATGTACACTTACTATTAATGAGAGAGTGACACAAATGTATCGGTACGTTATTAGACTACATAAGAGAATGGGGGGGAAAAAAACTATCAAAAGAATGAATAATCAGCTGAAAATGCCCTCTTAATACTTACAGTTTGAAGAATTCCTGGATTCAATCAAAAGCTCTGACAAAAAAACGATGCTGTATCAGTAAGTAGAATTGCATTCCCAACTTCATGATGTCTTTTGTCTCTTCTTCAATGAGGATTCATATTCTAGCTCTATTCCCTGTTCCAGCTCCTTTTCTATCCATGCTTCGCCGTCAACGTCCGAGCTCATCGGCTGTACCTCCGTTGTGCTTGTAGTTCTACAGAGTCGTCTTCTCTTTATTGCCTCTCTGATTTGACATAAGTTTATCTTTTTGTAGTCCTTAGACAGAGAAATAGGAACAGTTTTTGACTGTTTGATCTGATCAGGATAATTTTCTTCAGTATTCTGACAAATCCCAGTATCACCATTGTCAATGGCACTACTTGAACTCCCAGTATCGCTTGTTTGGCAGGGTAAAACTTCCACAGGACTAATGCGGTAATTCACATTTTGCTGATTGTGGCAACGACTAGGCGTTACAGACTTGTTGCAGTGACTGGCCTCCCTAATGGCTTCGTGACTATCGAGATGATCAGAAATCGTCACGCTTGATATACATGATTGGGAGCTATCAACTCTTGTCTGTCCATCTAAAGCTTCTGGCTTATGATTTTTCTCTTTTGAAGGTGGTAGGCTTTGTTTTCTATCTTTCTCGAATAACTTCAACATTCGGTGTATAACCTCTGAAAGGAATTCGAAAGAACATTTGGTAAATGCTCTCAGGTAGCAACAGTAAAATAGAGGGGTAAGAGGCATATGTATATAATGGGGAAAATGGTACAGATAACTTCCATTCCCTTTCCTTATTTAGTGAAAAATATATCATTACCAACTCTTTTACATTGATTTACTACTGAGATATCATATATATCATGCTCATTTGAAGCCAAAAACTAGCAAGACAGAACAAATATGAGTACAAAGATCAAGTTTAGCAACCTTGTAACTGTTTTGGCGAAACATCGAACTCCATCCACCAAGCCTTTCCCTCGTTTGAAGGCAATTTTACTTTTTGAAATTTGGAAGCAAGGAATATCGAACCTGCAGCAATATAATGGGGTTTGTACTCCAAGCACAGTGTTGTATAAAGCCTACAAGTTCCATGATGATGACATTAATCTCTAAAAGATGATCCTAGATTGATGTAAACAGAAACTTGATGAGTAAGATGAAGGTCCTTTACCAATCATTTACAAAATTCCAAGCCACCTTTCCAAGATCCGCAGCCATTCCCAATTTTTTTAAAGTAGCAACAAGTGGCTTGTAGGGAAGCTGAATGTCAACATCAAATCCAAGTGTTGACAATATAAGCCTCTCACTAATCAAGACTAATTCCTTTTGTTTGTTGAAAACTTCCTACAGGCATAATGTTGTATTCAGCCATCCGATTATTTCCTTTATAATATGCAGAGTGATCAATCACTTAAACATAATTGTTAAAGAAGATAACAGGCAGAGTACGTACTTTTTGTCTAATTCTTTTAGAGGCAGAAGGATCCCGTTTGAATATCAACTCAAAAGCCACAACGACGACATCATTCAGAAACCGTGGTGTCTCTTCAATCTTACAGGCAAGAAAGATACCTGCTGTTCCGATTGTCTGTGA

mRNA sequence

ATGCATAACGCCATTGTACCTGTGAACACGTTCCAATCCCATTCGATTTCGGTCATTATTCAAGCTCTATCACCATTGTCAATGGCACTACTTGAACTCCCAGTATCGCTTGTTTGGCAGGGTAAAACTTCCACAGGACTAATGCGAGTGATCAATCACTTAAACATAATTGTTAAAGAAGATAACAGGCAGAGTACAGGCAGAAGGATCCCGTTTGAATATCAACTCAAAAGCCACAACGACGACATCATTCAGAAACCGTGGTGTCTCTTCAATCTTACAGGCAAGAAAGATACCTGCTGTTCCGATTGTCTGTGA

Coding sequence (CDS)

ATGCATAACGCCATTGTACCTGTGAACACGTTCCAATCCCATTCGATTTCGGTCATTATTCAAGCTCTATCACCATTGTCAATGGCACTACTTGAACTCCCAGTATCGCTTGTTTGGCAGGGTAAAACTTCCACAGGACTAATGCGAGTGATCAATCACTTAAACATAATTGTTAAAGAAGATAACAGGCAGAGTACAGGCAGAAGGATCCCGTTTGAATATCAACTCAAAAGCCACAACGACGACATCATTCAGAAACCGTGGTGTCTCTTCAATCTTACAGGCAAGAAAGATACCTGCTGTTCCGATTGTCTGTGA

Protein sequence

MHNAIVPVNTFQSHSISVIIQALSPLSMALLELPVSLVWQGKTSTGLMRVINHLNIIVKEDNRQSTGRRIPFEYQLKSHNDDIIQKPWCLFNLTGKKDTCCSDCL
Homology
[Close]
BLAST of Carg11783 vs. NCBI nr
Match: KAG7029401.1 (hypothetical protein SDJN02_07740, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 216.1 bits (549), Expect = 1.5e-52
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 1   MHNAIVPVNTFQSHSISVIIQALSPLSMALLELPVSLVWQGKTSTGLMRVINHLNIIVKE 60
           MHNAIVPVNTFQSHSISVIIQALSPLSMALLELPVSLVWQGKTSTGLMRVINHLNIIVKE
Sbjct: 1   MHNAIVPVNTFQSHSISVIIQALSPLSMALLELPVSLVWQGKTSTGLMRVINHLNIIVKE 60

Query: 61  DNRQSTGRRIPFEYQLKSHNDDIIQKPWCLFNLTGKKDTCCSDCL 106
           DNRQSTGRRIPFEYQLKSHNDDIIQKPWCLFNLTGKKDTCCSDCL
Sbjct: 61  DNRQSTGRRIPFEYQLKSHNDDIIQKPWCLFNLTGKKDTCCSDCL 105

The following BLAST results are available for this feature:
BLAST of Carg11783 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7029401.11.5e-52100.00hypothetical protein SDJN02_07740, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg11783 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg11783 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg11783 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg11783-RACarg11783-RAmRNA