Carg11764 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg11764
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Biogenesis of lysosome-related organelles complex 1 subunit 1
Location	Carg_Chr10: 6992372 .. 6998064 (+)
RNA-Seq Expression	Carg11764
Synteny	Carg11764

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAATATTTCACCAGCCGAACATGAATTCTCCGTCAGGGCAATCACGGCAGCACCTCCCTGCACCGCGTAATCGCGGGAAGTTCCAATCGGAGGCGGAGAGATTGAGCGCCGACGTTGGAGGACTCGAAGCTTCATTGTTTCAGATGGTAAATGATCACCAGTACGCCTCTCTCAAGCTCCGAGAGAACTCCGGTTAGTTTCTACTTCCGCTTTCTCTTTCTTTCTTGGTCTTCGTGACCTTTTGCTGCTGACTGAATCGAATTTCGTAAAATGAAATCGTAATTGTCGTTATGAATCATGGCGATAGAGAAGGCGAAGAAAGATGCTATTCAGAAGGCGGTGCGCGTTTCGGATCTCTTAGTCGATGCCGTGAATGGTGGAGTTCAGGAATCTTTTGTCAATCAGAAGTTGATTGAGCTTGAAATTAGGGCTTTATCGACCACGATTACCCGATTTATGAAGCAGACCGATCAATGGCTCGCCGCCACTCACGCTCTGAACACTGCTGTTAAGGTTTGCTCTCATTCTGTGAAAGCTACTTTTGGTTAAAATTACATAGAAATCTACATTTTAGCTGTTTATAGGCATAAGTTAACTCAGCATTGTTGCGAATGGAAGCTCTCTAGCATTGTTATTGAAGTCCAAAAATTCATTCTTCCATAAATTGAAAAGTTTTGAAGTCAATTAAATCACTTGAGCTTGAAGGATTATGGAACGGCAGTTGATAATGCTTTTGGTACTACCTGCTAATCACATCTGAGTCTAAAAGATTTTCCCTCAATAGTGGTGTAAGTGGTGCATCATGGCTTGCATACTGCCCATTTATGTCCTACGAAGAACTTGTGGGCTATTAGACATTGAGTTATTGTGTATATTGTTAGAGTATTGTTAGAACTGTTTCGTATTTTTCATTTTTGTTTAAACGTTTTCTGTTAGATTCATGATAGTGGTTAGTTATTGTAACTCAGTCGCTGAGCAGAGTTTACAAAACCGGCCCCCTGTTCTCGTATCAAGAAATATATGAATAGAAGTGCAGTTTCTGAAGCTTAGTCAGAGGCATTTTGCAGCTATTTTTTTGTTGGTCTTCTTGAGACGACTTAAGCTATTATTCATTTTAAAATAATGAGTTCATTAACTTGCTAGCCATTCAGCACAACTTTTGGAAACAGTTTTGAAGTACAGAAGCAAAGTGCTATTTTTCTAAACAGCTCCTCCAACTATCATTTAGGTTTCAAGGATTCTTTCTCCTGGTTTGATAGTTTGTTTTCAATAACTTGTACATCACATTGATAGGAAGAGGAGGCTATAAACTTGAAAAAATACTTTTCAAACTCGTACAGGTTATGAATGTATTAAGGGTAAAGTGAAAATCAGAAAAGGTATCAAATTCCTCAGATTCAAGGTGGAAATAAATAAGATTTTTCCACTCGGCGTGGAGCTCTCTCCCTGACCCTCCCTCCCCCTTTTATCACCAGCTTCCCCCTTCCTGCACCCATACATCCATGATTGATTCTGACAGTGTTGCTTTATCTTCTTATAAATATGCATTAGTCTAGGAACATAAGAATCCCCATTCCCTAACAAGTGGGAAACTGATCAACTGGAATCCTCTATTGTTGTTTACAATAAACTTTTCACGATGGCTGGTACAAGATATCAAGAGCTCTCCACCGACATACAAGCTGTTACTGTTCTATGAACCCTTTGAATAAGACAGGGCCCTCCCTTGATATGAAGACAGAGAATGGGGGTTGAATTAGAATCTAAAACCTCTAGGTTCATTGATGGGATAATGAAACTTTCAAATACATATGAGACGCTTGTGGAGGTTTCATTGAAAAATTGAACAGAACCATGTCTAGAATGTATTTAATGGACACATCTAAAAAAAATCAAGGGCAATGGAATTGGTTATTGGTTTCCTAGCTGTTTTAAGTCTGTCGTCTTCATCTAAATGCCCATTTATATCAACATTGATCCTTTCTTCATTATGGACAATTACTTGAGTTATTCGGCTGGAATCCATAGCTTCATCCCCTGGCAACAATCTCCGATAAAAAATCCATCTTCAAAAGTGTGATGTTGACAATTCTGCAGGGGTTTTGGGACTGTACCCTTGGGGGCCATGTCAGGAGGAATATGGATCTTTTTTAACTCCTTCATTGAAAGTGATAATCATAGATATTCTTCTACAAAATGGCCTGTACACATGTTCTGATTTTAGACACTCCCCAACAGCCCCTCATATTGATTGTTTCCTTTATCAAAAGGGGTGATGGAAAAATTTACAAATGCATCAGTTAGATGGCTCTAGAGGCCTACATTGGTCCATTTCCCCATTCTTTTATCATTTGTTTGCTCTATTTGATGTCCTACCCCCTTTCGATTTGAGAATATGTGGTCACAACATCATTCTTTACTCTCTCTTGTGGAATATTGGTGGAAGAATACACCTCTTCGTGGCTGTCTGGGACATGGTTTTATCTTGAAACTTAAAGGCCTTAAAGCTATTGTGGAATAGGAACACTTTTGGTTGCATTACTACCCAAAAGAATCAGCTAATTACAGAAATAGCTCTCATCGACAGCAAGGAAGAATCTAGGGATTTTCATCCCTTTCACAAAATTCAGAGGAATTTATTAAAAGAAAATTTACTTAAAAAAAAAAATCCTCTCGAGCCAAAAAATGCAAGATAAAGTGGCTTTGTGACGGTGACATAAATTCCTCTTTATTCCATCCAATTATGGCTACAAAAAAAGTGGAAAAATTCTAAATCACAAATTCTGTCTAAGAATAGCTGCCTCACTTATTCTGAAATTGAAATCAAGTTTCGCTCCTTCTTCACCAATCTTTATACCAAGAAACCAGGATCTGGTTCTCTTATAACATCTTTCAATGAGATTCTCTTACTGCACAGCAAGAAACCAAACCAGGATCTGGTTCTCTTCCAACATCTTTCAATGAGATTCTCTTACTGCACAGCAAGCTTCGCTTTTAGAAATAGGTTTTACTGTGAAGATTAAATCAGCGGTATCAGGTTTGGGCTCCAACAAATGTCCTGGTCCGGATGGGTTTACAGCTGAGTTCTTTAAAATGTTTAGGCACATCCTTCAAAGTGACATCTTGAGTGTGCTCCAGAAACTTGTAGGAACAGGTTTATAAACGCTGCATTGAATGAAACCTACATTTGCCTTATCTCAAAAAAATGGACTCGCATACTGTAAATGACTAGTCCGGTCAACCTCACTTCTTGTCCTTACAAGATCATTGTCAGGGTACTCCCAGAGAGCTTAGAGACGGTTCTTCCTCTCATCATCACTGATTTTCAGTAGGCACTCATAAATTGTACTTGATACATCTTTTGTGACCCATTAACTTGTAGTGAACGGATTTCTCATCAAACTAAACATTGAAAAAGCTTTTGACAAGGTGGATTGGTCCTTTCTTGATAATATTCTAGAAGTCAAAGGTTCTAACCCTTGATGGCACAAATTGATTAAGGGTTGTATATCCTCGTCAAATCTCTCCCTCCCTTTCTTTTTATCCTGACTATGGATTGCTTTAGCTGTCTTTTGATTCAATTGGCATCCTCGGGATCTATGAAGGGGCTTGAAGTTGGTTCTAGTGGCTGTAATATCACTCATCTCTAATTTGCAGATGATACACTACTCTTTTCATCTCATGAGGCTATCCATAACTTATTTGGTATGGTTCACGCCTTTGAGAATGTCTCAGGTCTCAATATCAATATTTGCAAAACTGAAATTTTGGTCTTACCTCGGTCTTCCTTTGAACAACAACCCAAAGCTTTCTTCTTTTCCCACAGTGGAAAAAATACGAAGGATATTAAATGGCTGGAAAAGAACTTTCATATTTCCAAGGGAAGATGGCACACACTTATCCAAGCGACACTTTGTAACCTCCCCGCCTATTATATCTCCCTTTTTGAGATGCAAAACAAGATTTTCAAGACCGTTGAGAAATTATTCTGGAACTTTCTTTGGGGAGGACATGAGGGTTTCCATAAGCATCTTATTGACAAAGTACGTCATTTTTTTTTTTTTTTTTTTTTTTTGTTCTCTTTTGTAAGAGAATTTCATTGATGTTTGAAATTTACAAAAGGGATGTGTTATCCATGATGTTTTAAAAAAAAACCTTCCCAATTTACAACGAGGGAGGTATGACTATAGGAACCAAAAGTATTAGACAATTTACACCAAAATATACCGTGGTAAACAACATTGTCAAAGAGTTTTGTATAAATCTATGTCTTCGTCATGAATACTCTTTGATTTTTTTCCACCGATTCCAAAAGATGGAATCCAAAAGAAAACCATAATGAGATTTTTTCATAGCAAGACTTTTGTATTCTTAAAGGAGTGGTAAGCTAATGCCATGTCCAATAAATCGTTTACCTCCCTTGGAAAAGTGAGATGCCATCCAAATTTTTTTTTTTTTTTTTAGAATCCCTGTTCATAAATTTTGTCTCTCTGTGAATAATCTAAAGACTTGAATCACCCAAAAGTTTCTCGGTTGAAGACCGACAGAAACTGGTTGAAAAGAATGACATGAATATCATAATCTTGAATATGTGAACTAGTAAAGCCTACCAACCAAATCTTATTTCCTTTCATGTTTTATACGTATCTTCCTTATGTTTTTTCTTTTTCTTTTTTCATTTTGATATGTTATCGAGATAGTAATTTGATGTGTGTTTATATTATAGGAAATTGGAGATTTTGAGAACTGGATAAAGACCATAGATTTCGATTGTAAGAGCATCACTACTGCCATCCATAACATTTACCAAGACTGAAGTACTCGTCGCGAAAGAGTTAACTGTCCTTTCCTTCACCGAGCTCATTCCGGTGAGTTGAAAAAGATATAGATCCTCACTCTCTGCTTTAAGTTCGCTGAATGTGTGCCCCCATAACATGGCCTGATAAGTTCTTGTGATATAACGATACAAAGGTGCAGCATATCCAGATGGAAACTCCTGTAGAAACTTGGAGCACCTCAGTACCCAACTTGGCTGCTACCTCACTAACTCTGTAAAATAATTTGTCCACTCTTCTTTTTTTCGAGTTCATTGATTTGTTCCTTATTTTAACACAGTGGAATCAATTTGTCTATTTATTGCTCATGTACGCTGCATCCATCCTTCTGAGTACAATTCTTAGCTTCTGCCATGTAATAATCAGTTCTACACTCTTCCATTTATGGTGTCTATATTATGCTCTCTCCACTGATACTCAGCTTCATAGTTATCAGAAATATTTGTTGGGTTTAAAGTGTTTTGATCTAAATTTATTATTGACCACAAAGTTCCTATGGCTTAATCGAATCATCTCCTTAAATATGCTACACTCTTCTTCTCCATTTTCTGACTTAGGTTTTGGAGTTTGGTTCTTCACTTGGGAAGCATCAAAATACTATTGCTTTTGGGTGATGATGGATATCAAGAAATGCATGAAAATGATGATGGTCGAAACAGGAGCCCTTTCTTGCTTTTAACCGAGTGCATACATTGAGTTGGAACTGTTTTATCTAATACTAGTATGTGCGGCAAGTACTTCTGCCTCATTCTGTTCCTGAATGGGAGGTATGCTTGGCCCCTTGTTACATTACCTTTTTCTATGCTTATGGTTTGAGACATCAAGCCGCATCACCTTCTCTTCGATAATAAAGGAGA

mRNA sequence

AGAATATTTCACCAGCCGAACATGAATTCTCCGTCAGGGCAATCACGGCAGCACCTCCCTGCACCGCGTAATCGCGGGAAGTTCCAATCGGAGGCGGAGAGATTGAGCGCCGACGTTGGAGGACTCGAAGCTTCATTGTTTCAGATGGTAAATGATCACCAGTACGCCTCTCTCAAGCTCCGAGAGAACTCCGAGAAGGCGAAGAAAGATGCTATTCAGAAGGCGGTGCGCGTTTCGGATCTCTTAGTCGATGCCGTGAATGGTGGAGTTCAGGAATCTTTTGTCAATCAGAAGTTGATTGAGCTTGAAATTAGGGCTTTATCGACCACGATTACCCGATTTATGAAGCAGACCGATCAATGGCTCGCCGCCACTCACGCTCTGAACACTGCTGTTAAGGAAATTGGAGATTTTGAGAACTGGATAAAGACCATAGATTTCGATTGTAAGAGCATCACTACTGCCATCCATAACATTTACCAAGACTGAAGTACTCGTCGCGAAAGAGTTAACTGTCCTTTCCTTCACCGAGCTCATTCCGGTGCAGCATATCCAGATGGAAACTCCTGTAGAAACTTGGAGCACCTCAGTACCCAACTTGGCTGCTACCTCACTAACTCTGTTTTGGAGTTTGGTTCTTCACTTGGGAAGCATCAAAATACTATTGCTTTTGGGTGATGATGGATATCAAGAAATGCATGAAAATGATGATGGTCGAAACAGGAGCCCTTTCTTGCTTTTAACCGAGTGCATACATTGAGTTGGAACTGTTTTATCTAATACTAGTATGTGCGGCAAGTACTTCTGCCTCATTCTGTTCCTGAATGGGAGGTATGCTTGGCCCCTTGTTACATTACCTTTTTCTATGCTTATGGTTTGAGACATCAAGCCGCATCACCTTCTCTTCGATAATAAAGGAGA

Coding sequence (CDS)

ATGAATTCTCCGTCAGGGCAATCACGGCAGCACCTCCCTGCACCGCGTAATCGCGGGAAGTTCCAATCGGAGGCGGAGAGATTGAGCGCCGACGTTGGAGGACTCGAAGCTTCATTGTTTCAGATGGTAAATGATCACCAGTACGCCTCTCTCAAGCTCCGAGAGAACTCCGAGAAGGCGAAGAAAGATGCTATTCAGAAGGCGGTGCGCGTTTCGGATCTCTTAGTCGATGCCGTGAATGGTGGAGTTCAGGAATCTTTTGTCAATCAGAAGTTGATTGAGCTTGAAATTAGGGCTTTATCGACCACGATTACCCGATTTATGAAGCAGACCGATCAATGGCTCGCCGCCACTCACGCTCTGAACACTGCTGTTAAGGAAATTGGAGATTTTGAGAACTGGATAAAGACCATAGATTTCGATTGTAAGAGCATCACTACTGCCATCCATAACATTTACCAAGACTGA

Protein sequence

MNSPSGQSRQHLPAPRNRGKFQSEAERLSADVGGLEASLFQMVNDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALSTTITRFMKQTDQWLAATHALNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD

Homology

[Close]

BLAST of Carg11764 vs. NCBI nr
Match: XP_022948128.1 (biogenesis of lysosome-related organelles complex 1 subunit 1 [Cucurbita moschata] >KAG7023932.1 Biogenesis of lysosome-related organelles complex 1 subunit 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 303.9 bits (777), Expect = 7.9e-79
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MNSPSGQSRQHLPAPRNRGKFQSEAERLSADVGGLEASLFQMVNDHQYASLKLRENSEKA 60
           MNSPSGQSRQHLPAPRNRGKFQSEAERLSADVGGLEASLFQMVNDHQYASLKLRENSEKA
Sbjct: 1   MNSPSGQSRQHLPAPRNRGKFQSEAERLSADVGGLEASLFQMVNDHQYASLKLRENSEKA 60

Query: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALSTTITRFMKQTDQWLAATHA 120
           KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALSTTITRFMKQTDQWLAATHA
Sbjct: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALSTTITRFMKQTDQWLAATHA 120

Query: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD 156
           LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD
Sbjct: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD 155

[Close]

BLAST of Carg11764 vs. NCBI nr
Match: XP_023534753.1 (biogenesis of lysosome-related organelles complex 1 subunit 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 301.6 bits (771), Expect = 3.9e-78
Identity = 154/155 (99.35%), Postives = 154/155 (99.35%), Query Frame = 0


Query: 1   MNSPSGQSRQHLPAPRNRGKFQSEAERLSADVGGLEASLFQMVNDHQYASLKLRENSEKA 60
           MNSPSGQSRQHLPAPRNRGKFQSEAERLSADVGGLE SLFQMVNDHQYASLKLRENSEKA
Sbjct: 1   MNSPSGQSRQHLPAPRNRGKFQSEAERLSADVGGLEDSLFQMVNDHQYASLKLRENSEKA 60

Query: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALSTTITRFMKQTDQWLAATHA 120
           KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALSTTITRFMKQTDQWLAATHA
Sbjct: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALSTTITRFMKQTDQWLAATHA 120

Query: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD 156
           LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD
Sbjct: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD 155

[Close]

BLAST of Carg11764 vs. NCBI nr
Match: XP_023007259.1 (biogenesis of lysosome-related organelles complex 1 subunit 1 [Cucurbita maxima])

HSP 1 Score: 294.3 bits (752), Expect = 6.2e-76
Identity = 151/155 (97.42%), Postives = 152/155 (98.06%), Query Frame = 0


Query: 1   MNSPSGQSRQHLPAPRNRGKFQSEAERLSADVGGLEASLFQMVNDHQYASLKLRENSEKA 60
           MNSPSGQSRQH PA RNRGKFQSEAERLSADVGGLEASLFQMVNDHQYASLKLRENSEKA
Sbjct: 1   MNSPSGQSRQHHPAARNRGKFQSEAERLSADVGGLEASLFQMVNDHQYASLKLRENSEKA 60

Query: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALSTTITRFMKQTDQWLAATHA 120
           KKDAIQKA+RVSDLLVDAVNGGVQ SFVNQKLIELEIRALSTTITRFMKQTDQWLAATHA
Sbjct: 61  KKDAIQKALRVSDLLVDAVNGGVQGSFVNQKLIELEIRALSTTITRFMKQTDQWLAATHA 120

Query: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD 156
           LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD
Sbjct: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD 155

[Close]

BLAST of Carg11764 vs. NCBI nr
Match: KAG6605390.1 (WRKY transcription factor WRKY24, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 273.5 bits (698), Expect = 1.1e-69
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MNSPSGQSRQHLPAPRNRGKFQSEAERLSADVGGLEASLFQMVNDHQYASLKLRENSEKA 60
           MNSPSGQSRQHLPAPRNRGKFQSEAERLSADVGGLEASLFQMVNDHQYASLKLRENSEKA
Sbjct: 1   MNSPSGQSRQHLPAPRNRGKFQSEAERLSADVGGLEASLFQMVNDHQYASLKLRENSEKA 60

Query: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALSTTITRFMKQTDQWLAATHA 120
           KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALSTTITRFMKQTDQWLAATHA
Sbjct: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALSTTITRFMKQTDQWLAATHA 120

Query: 121 LNTAVKEIGDFENWIKTIDFD 142
           LNTAVKEIGDFENWIKTIDFD
Sbjct: 121 LNTAVKEIGDFENWIKTIDFD 141

[Close]

BLAST of Carg11764 vs. NCBI nr
Match: XP_008463815.1 (PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Cucumis melo])

HSP 1 Score: 270.8 bits (691), Expect = 7.4e-69
Identity = 139/155 (89.68%), Postives = 142/155 (91.61%), Query Frame = 0


Query: 1   MNSPSGQSRQHLPAPRNRGKFQSEAERLSADVGGLEASLFQMVNDHQYASLKLRENSEKA 60
           M S  GQSR  LP P NRGKFQS+ ERLSADVGGLE SL QMV+DHQYASLKLRENSEKA
Sbjct: 1   MKSSLGQSRPDLPVPPNRGKFQSDTERLSADVGGLEVSLLQMVSDHQYASLKLRENSEKA 60

Query: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALSTTITRFMKQTDQWLAATHA 120
           KKDAIQKAVRVSDLLVD VNGGVQESFVNQKLIELEIRAL+TTI RF KQTDQWLAATHA
Sbjct: 61  KKDAIQKAVRVSDLLVDTVNGGVQESFVNQKLIELEIRALATTIARFTKQTDQWLAATHA 120

Query: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD 156
           LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD
Sbjct: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD 155

[Close]

BLAST of Carg11764 vs. ExPASy Swiss-Prot
Match: O22929 (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Arabidopsis thaliana OX=3702 GN=BLOS1 PE=1 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 9.8e-40
Identity = 85/155 (54.84%), Postives = 115/155 (74.19%), Query Frame = 0


Query: 1   MNSPSGQSRQHLPAPRNRGKFQSEAERLSADVGGLEASLFQMVNDHQYASLKLRENSEKA 60
           MN+P       L A R R     E E+   +   LE+SL Q+++D++ +SL+LRE +E++
Sbjct: 1   MNTP-----MSLSAARGRMLPFLEKEKSEEESETLESSLLQLIDDNRRSSLQLREKTERS 60

Query: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALSTTITRFMKQTDQWLAATHA 120
           +K+AI+ A R +DLLV AVNGGV+E FVN+K IE EIR L+ T+ +F KQTDQWLA THA
Sbjct: 61  RKEAIRHAARTADLLVKAVNGGVEECFVNEKRIESEIRNLAITVAKFGKQTDQWLAVTHA 120

Query: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD 156
           +N+AVKEIGDFENW+KT++FDCK IT AI NI++D
Sbjct: 121 VNSAVKEIGDFENWMKTMEFDCKKITAAIRNIHED 150

[Close]

BLAST of Carg11764 vs. ExPASy Swiss-Prot
Match: Q0VFD8 (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Xenopus tropicalis OX=8364 GN=bloc1s1 PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 8.6e-20
Identity = 45/116 (38.79%), Postives = 75/116 (64.66%), Query Frame = 0


Query: 39  LFQMVNDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIR 98
           L +++ +HQ    + +E  EK +KDAI  A  +++ LVD +N GV +++VNQ+ ++ E++
Sbjct: 2   LSRLLKEHQGKQTERKEAQEKRRKDAIAAATTLTEALVDHLNVGVAQAYVNQRKLDHEVK 61

Query: 99  ALSTTITRFMKQTDQWLAATHALNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQ 155
            L T   +F KQT QW++     N A+KEIGD ENW ++I+ D + I TA+  +Y+
Sbjct: 62  TLQTQAAQFAKQTTQWISLVENFNQALKEIGDVENWARSIEKDMRIIATALEYVYK 117

[Close]

BLAST of Carg11764 vs. ExPASy Swiss-Prot
Match: P78537 (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Homo sapiens OX=9606 GN=BLOC1S1 PE=1 SV=2)

HSP 1 Score: 94.0 bits (232), Expect = 1.6e-18
Identity = 48/144 (33.33%), Postives = 84/144 (58.33%), Query Frame = 0


Query: 14  APRNRGKFQSEAERLSADVGGLE---ASLFQMVNDHQYASLKLRENSEKAKKDAIQKAVR 73
           AP +RG+  S   R    V   +     L +++ +HQ    + +E  EK +++AI  A  
Sbjct: 2   APGSRGERSSFRSRRGPGVPSPQPDVTMLSRLLKEHQAKQNERKELQEKRRREAITAATC 61

Query: 74  VSDLLVDAVNGGVQESFVNQKLIELEIRALSTTITRFMKQTDQWLAATHALNTAVKEIGD 133
           +++ LVD +N GV ++++NQ+ ++ E++ L     +F KQT QW+      N A+KEIGD
Sbjct: 62  LTEALVDHLNVGVAQAYMNQRKLDHEVKTLQVQAAQFAKQTGQWIGMVENFNQALKEIGD 121

Query: 134 FENWIKTIDFDCKSITTAIHNIYQ 155
            ENW ++I+ D ++I TA+  +Y+
Sbjct: 122 VENWARSIELDMRTIATALEYVYK 145

[Close]

BLAST of Carg11764 vs. ExPASy Swiss-Prot
Match: Q5R7L8 (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Pongo abelii OX=9601 GN=BLOC1S1 PE=2 SV=2)

HSP 1 Score: 94.0 bits (232), Expect = 1.6e-18
Identity = 48/144 (33.33%), Postives = 84/144 (58.33%), Query Frame = 0


Query: 14  APRNRGKFQSEAERLSADVGGLE---ASLFQMVNDHQYASLKLRENSEKAKKDAIQKAVR 73
           AP +RG+  S   R    V   +     L +++ +HQ    + +E  EK +++AI  A  
Sbjct: 2   APGSRGERSSFRSRRGPGVPSPQPDVTMLSRLLKEHQAKQNERKELQEKRRREAITAATC 61

Query: 74  VSDLLVDAVNGGVQESFVNQKLIELEIRALSTTITRFMKQTDQWLAATHALNTAVKEIGD 133
           +++ LVD +N GV ++++NQ+ ++ E++ L     +F KQT QW+      N A+KEIGD
Sbjct: 62  LTEALVDHLNVGVAQAYMNQRKLDHEVKTLQVQAAQFAKQTGQWIGMVENFNQALKEIGD 121

Query: 134 FENWIKTIDFDCKSITTAIHNIYQ 155
            ENW ++I+ D ++I TA+  +Y+
Sbjct: 122 VENWARSIELDMRTIATALEYVYK 145

[Close]

BLAST of Carg11764 vs. ExPASy Swiss-Prot
Match: Q2NKW0 (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Bos taurus OX=9913 GN=BLOC1S1 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.6e-18
Identity = 41/116 (35.34%), Postives = 74/116 (63.79%), Query Frame = 0


Query: 39  LFQMVNDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIR 98
           L +++ +HQ    + +E  EK +++AI  A  +++ LVD +N GV ++++NQ+ ++ E++
Sbjct: 2   LSRLLKEHQAKQNERKELQEKRRREAITAATCLTEALVDHLNVGVAQAYMNQRKLDHEVK 61

Query: 99  ALSTTITRFMKQTDQWLAATHALNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQ 155
            L     +F KQT QW+      N A+KEIGD ENW ++I+ D ++I TA+  +Y+
Sbjct: 62  TLQVQAAQFAKQTGQWIGMVENFNQALKEIGDVENWARSIELDMRTIATALEYVYK 117

[Close]

BLAST of Carg11764 vs. ExPASy TrEMBL
Match: A0A6J1G8I4 (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Cucurbita moschata OX=3662 GN=LOC111451801 PE=3 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 3.8e-79
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MNSPSGQSRQHLPAPRNRGKFQSEAERLSADVGGLEASLFQMVNDHQYASLKLRENSEKA 60
           MNSPSGQSRQHLPAPRNRGKFQSEAERLSADVGGLEASLFQMVNDHQYASLKLRENSEKA
Sbjct: 1   MNSPSGQSRQHLPAPRNRGKFQSEAERLSADVGGLEASLFQMVNDHQYASLKLRENSEKA 60

Query: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALSTTITRFMKQTDQWLAATHA 120
           KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALSTTITRFMKQTDQWLAATHA
Sbjct: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALSTTITRFMKQTDQWLAATHA 120

Query: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD 156
           LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD
Sbjct: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD 155

[Close]

BLAST of Carg11764 vs. ExPASy TrEMBL
Match: A0A6J1L4G4 (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Cucurbita maxima OX=3661 GN=LOC111499798 PE=3 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 3.0e-76
Identity = 151/155 (97.42%), Postives = 152/155 (98.06%), Query Frame = 0


Query: 1   MNSPSGQSRQHLPAPRNRGKFQSEAERLSADVGGLEASLFQMVNDHQYASLKLRENSEKA 60
           MNSPSGQSRQH PA RNRGKFQSEAERLSADVGGLEASLFQMVNDHQYASLKLRENSEKA
Sbjct: 1   MNSPSGQSRQHHPAARNRGKFQSEAERLSADVGGLEASLFQMVNDHQYASLKLRENSEKA 60

Query: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALSTTITRFMKQTDQWLAATHA 120
           KKDAIQKA+RVSDLLVDAVNGGVQ SFVNQKLIELEIRALSTTITRFMKQTDQWLAATHA
Sbjct: 61  KKDAIQKALRVSDLLVDAVNGGVQGSFVNQKLIELEIRALSTTITRFMKQTDQWLAATHA 120

Query: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD 156
           LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD
Sbjct: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD 155

[Close]

BLAST of Carg11764 vs. ExPASy TrEMBL
Match: A0A1S3CKJ9 (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Cucumis melo OX=3656 GN=LOC103501869 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 3.6e-69
Identity = 139/155 (89.68%), Postives = 142/155 (91.61%), Query Frame = 0


Query: 1   MNSPSGQSRQHLPAPRNRGKFQSEAERLSADVGGLEASLFQMVNDHQYASLKLRENSEKA 60
           M S  GQSR  LP P NRGKFQS+ ERLSADVGGLE SL QMV+DHQYASLKLRENSEKA
Sbjct: 1   MKSSLGQSRPDLPVPPNRGKFQSDTERLSADVGGLEVSLLQMVSDHQYASLKLRENSEKA 60

Query: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALSTTITRFMKQTDQWLAATHA 120
           KKDAIQKAVRVSDLLVD VNGGVQESFVNQKLIELEIRAL+TTI RF KQTDQWLAATHA
Sbjct: 61  KKDAIQKAVRVSDLLVDTVNGGVQESFVNQKLIELEIRALATTIARFTKQTDQWLAATHA 120

Query: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD 156
           LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD
Sbjct: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD 155

[Close]

BLAST of Carg11764 vs. ExPASy TrEMBL
Match: A0A6J1D9F5 (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Momordica charantia OX=3673 GN=LOC111018127 PE=3 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 3.7e-66
Identity = 131/155 (84.52%), Postives = 141/155 (90.97%), Query Frame = 0


Query: 1   MNSPSGQSRQHLPAPRNRGKFQSEAERLSADVGGLEASLFQMVNDHQYASLKLRENSEKA 60
           M+SPSG SR HLP  RNRG  QSE ERLS++ GGLEASL QMV+DHQ+ASLKLR++SEKA
Sbjct: 1   MDSPSGPSRPHLPVARNRGMLQSETERLSSEAGGLEASLLQMVHDHQFASLKLRQDSEKA 60

Query: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALSTTITRFMKQTDQWLAATHA 120
           KKDAIQKAVRVSDLLV AVNGGVQESFVNQKLIELEIRAL+ TI+RFMKQTDQWL  THA
Sbjct: 61  KKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRALAATISRFMKQTDQWLTTTHA 120

Query: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD 156
           LNTA+KEIGDFENWIKTIDFDCKSIT AIHNIYQD
Sbjct: 121 LNTAIKEIGDFENWIKTIDFDCKSITAAIHNIYQD 155

[Close]

BLAST of Carg11764 vs. ExPASy TrEMBL
Match: A0A5A7V238 (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold852G00400 PE=3 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 2.6e-51
Identity = 114/150 (76.00%), Postives = 122/150 (81.33%), Query Frame = 0


Query: 1   MNSPSGQSRQHLPAPRNRGKFQSEAERLSADVGGLEASLFQMVNDHQYASLKLRENSEKA 60
           M S  GQSR  LP P NRGKFQS+ ERLSADVGGLE SL QMV+DHQYASLKLRENSEKA
Sbjct: 1   MKSSLGQSRPDLPVPPNRGKFQSDTERLSADVGGLEVSLLQMVSDHQYASLKLRENSEKA 60

Query: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALSTTITRFMKQTDQWLAATHA 120
           KKDAIQKAVRVSDLLVD VNGGVQESFVNQKLIELEIRAL+TTI RF KQTDQWLAATHA
Sbjct: 61  KKDAIQKAVRVSDLLVDTVNGGVQESFVNQKLIELEIRALATTIARFTKQTDQWLAATHA 120

Query: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIH 151
           LNTAVK  G  +  +  +  +  SI   +H
Sbjct: 121 LNTAVKHFGRIKAGLILLLTEEFSIVIGVH 150

[Close]

BLAST of Carg11764 vs. TAIR 10
Match: AT2G30330.1 (GCN5L1 family protein )

HSP 1 Score: 164.5 bits (415), Expect = 6.9e-41
Identity = 85/155 (54.84%), Postives = 115/155 (74.19%), Query Frame = 0


Query: 1   MNSPSGQSRQHLPAPRNRGKFQSEAERLSADVGGLEASLFQMVNDHQYASLKLRENSEKA 60
           MN+P       L A R R     E E+   +   LE+SL Q+++D++ +SL+LRE +E++
Sbjct: 1   MNTP-----MSLSAARGRMLPFLEKEKSEEESETLESSLLQLIDDNRRSSLQLREKTERS 60

Query: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALSTTITRFMKQTDQWLAATHA 120
           +K+AI+ A R +DLLV AVNGGV+E FVN+K IE EIR L+ T+ +F KQTDQWLA THA
Sbjct: 61  RKEAIRHAARTADLLVKAVNGGVEECFVNEKRIESEIRNLAITVAKFGKQTDQWLAVTHA 120

Query: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD 156
           +N+AVKEIGDFENW+KT++FDCK IT AI NI++D
Sbjct: 121 VNSAVKEIGDFENWMKTMEFDCKKITAAIRNIHED 150

The following BLAST results are available for this feature:

BLAST of Carg11764 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948128.1	7.9e-79	100.00	biogenesis of lysosome-related organelles complex 1 subunit 1 [Cucurbita moschat...	[more]
XP_023534753.1	3.9e-78	99.35	biogenesis of lysosome-related organelles complex 1 subunit 1 [Cucurbita pepo su...	[more]
XP_023007259.1	6.2e-76	97.42	biogenesis of lysosome-related organelles complex 1 subunit 1 [Cucurbita maxima]	[more]
KAG6605390.1	1.1e-69	100.00	WRKY transcription factor WRKY24, partial [Cucurbita argyrosperma subsp. sororia...	[more]
XP_008463815.1	7.4e-69	89.68	PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Cucumi...	[more]

BLAST of Carg11764 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22929	9.8e-40	54.84	Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Arabidopsis tha...	[more]
Q0VFD8	8.6e-20	38.79	Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Xenopus tropica...	[more]
P78537	1.6e-18	33.33	Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Homo sapiens OX...	[more]
Q5R7L8	1.6e-18	33.33	Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Pongo abelii OX...	[more]
Q2NKW0	3.6e-18	35.34	Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Bos taurus OX=9...	[more]

BLAST of Carg11764 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G8I4	3.8e-79	100.00	Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Cucurbita mosch...	[more]
A0A6J1L4G4	3.0e-76	97.42	Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Cucurbita maxim...	[more]
A0A1S3CKJ9	3.6e-69	89.68	Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Cucumis melo OX...	[more]
A0A6J1D9F5	3.7e-66	84.52	Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Momordica chara...	[more]
A0A5A7V238	2.6e-51	76.00	Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Cucumis melo va...	[more]

BLAST of Carg11764 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30330.1	6.9e-41	54.84	GCN5L1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009395	Biogenesis of lysosome-related organelles complex 1 subunit 1	PFAM	PF06320	GCN5L1	coord: 42..154 e-value: 4.5E-41 score: 139.6
IPR009395	Biogenesis of lysosome-related organelles complex 1 subunit 1	PANTHER	PTHR13073	BLOC-1 COMPLEX SUBUNIT 1	coord: 22..154
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11764-RA	Carg11764-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051641	cellular localization
cellular_component	GO:0031083	BLOC-1 complex