Carg11748 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg11748
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr02: 3923568 .. 3923911 (-)
RNA-Seq Expression	Carg11748
Synteny	Carg11748

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAGGTTCATGAAGCTGAGACTGGACCGAGTTTTAGCCGAAAGCTACGAAGCCGATAGCTTAGAACAAGCATTGGCTTCTAACCCGACCAACATCGAGTTTGAGAAGCCCGAAAAATGGGTGGCTCCCTACCCCAAGTATGAATATGGGTGGTGGGAGATTTTCTTGCCGCCAGTGACAAAAACAGAAGCAGAAGCAAAAGTGTAAGCTGTGTGTGATTTTCTTTGACATCTTTAATCAATTATAATTTGGATGGTGTGAGGATTTGATAAACCATTTGTAGTTGGAAGGCAGTTTTTGATTATTCTAATGTGGTAAATGAGTATGATCAATTAAAGTGA

mRNA sequence

ATGGGCAGGTTCATGAAGCTGAGACTGGACCGAGTTTTAGCCGAAAGCTACGAAGCCGATAGCTTAGAACAAGCATTGGCTTCTAACCCGACCAACATCGAGTTTGAGAAGCCCGAAAAATGGGTGGCTCCCTACCCCAAGTATGAATATGGGTGGTGGGAGATTTTCTTGCCGCCAGTGACAAAAACAGAAGCAGAAGCAAAAGTTTGGAAGGCAGTTTTTGATTATTCTAATGTGGTAAATGAGTATGATCAATTAAAGTGA

Coding sequence (CDS)

ATGGGCAGGTTCATGAAGCTGAGACTGGACCGAGTTTTAGCCGAAAGCTACGAAGCCGATAGCTTAGAACAAGCATTGGCTTCTAACCCGACCAACATCGAGTTTGAGAAGCCCGAAAAATGGGTGGCTCCCTACCCCAAGTATGAATATGGGTGGTGGGAGATTTTCTTGCCGCCAGTGACAAAAACAGAAGCAGAAGCAAAAGTTTGGAAGGCAGTTTTTGATTATTCTAATGTGGTAAATGAGTATGATCAATTAAAGTGA

Protein sequence

MGRFMKLRLDRVLAESYEADSLEQALASNPTNIEFEKPEKWVAPYPKYEYGWWEIFLPPVTKTEAEAKVWKAVFDYSNVVNEYDQLK

Homology

[Close]

BLAST of Carg11748 vs. NCBI nr
Match: KAG7035328.1 (hypothetical protein SDJN02_02123, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 184.5 bits (467), Expect = 3.9e-43
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MGRFMKLRLDRVLAESYEADSLEQALASNPTNIEFEKPEKWVAPYPKYEYGWWEIFLPPV 60
          MGRFMKLRLDRVLAESYEADSLEQALASNPTNIEFEKPEKWVAPYPKYEYGWWEIFLPPV
Sbjct: 1  MGRFMKLRLDRVLAESYEADSLEQALASNPTNIEFEKPEKWVAPYPKYEYGWWEIFLPPV 60

Query: 61 TKTEAEAKVWKAVFDYSNVVNEYDQLK 88
          TKTEAEAKVWKAVFDYSNVVNEYDQLK
Sbjct: 61 TKTEAEAKVWKAVFDYSNVVNEYDQLK 87

[Close]

BLAST of Carg11748 vs. NCBI nr
Match: XP_022947359.1 (uncharacterized protein LOC111451246 [Cucurbita moschata])

HSP 1 Score: 140.2 bits (352), Expect = 8.5e-30
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 4   FMKLRLDRVLAESYEADSLEQALASNPTNIEFEKPEKWVAPYPKYEYGWWEIFLPPVTKT 63
           FMKLRLDRVLAESYEADSLEQALASNPTNIEFEKPEKWVAPYPKYEYGWWEIFLPPVTKT
Sbjct: 165 FMKLRLDRVLAESYEADSLEQALASNPTNIEFEKPEKWVAPYPKYEYGWWEIFLPPVTKT 224

Query: 64  EAEAKV 70
           EAEAKV
Sbjct: 225 EAEAKV 230

[Close]

BLAST of Carg11748 vs. NCBI nr
Match: KAG6605371.1 (putative protein ycf54, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 140.2 bits (352), Expect = 8.5e-30
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 4   FMKLRLDRVLAESYEADSLEQALASNPTNIEFEKPEKWVAPYPKYEYGWWEIFLPPVTKT 63
           FMKLRLDRVLAESYEADSLEQALASNPTNIEFEKPEKWVAPYPKYEYGWWEIFLPPVTKT
Sbjct: 165 FMKLRLDRVLAESYEADSLEQALASNPTNIEFEKPEKWVAPYPKYEYGWWEIFLPPVTKT 224

Query: 64  EAEAKV 70
           EAEAKV
Sbjct: 225 EAEAKV 230

[Close]

BLAST of Carg11748 vs. NCBI nr
Match: XP_023533874.1 (uncharacterized protein LOC111795592 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 136.7 bits (343), Expect = 9.4e-29
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 4   FMKLRLDRVLAESYEADSLEQALASNPTNIEFEKPEKWVAPYPKYEYGWWEIFLPPVTKT 63
           FMKLRLDRVLAESYEADSLEQALASNPTNIEFEKPEKW APYPKYEYGWWEIFLPPVTKT
Sbjct: 160 FMKLRLDRVLAESYEADSLEQALASNPTNIEFEKPEKWEAPYPKYEYGWWEIFLPPVTKT 219

Query: 64  EAEAKV 70
           EAEAK+
Sbjct: 220 EAEAKL 225

[Close]

BLAST of Carg11748 vs. NCBI nr
Match: XP_022149576.1 (uncharacterized protein LOC111017973 [Momordica charantia])

HSP 1 Score: 124.0 bits (310), Expect = 6.3e-25
Identity = 56/63 (88.89%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 4   FMKLRLDRVLAESYEADSLEQALASNPTNIEFEKPEKWVAPYPKYEYGWWEIFLPPVTKT 63
           FMKLRLDRVLAESYEA+S E+A+ASNPTNIEFEKPEKWVAPYPKYEYGWWE FLPPVTK 
Sbjct: 169 FMKLRLDRVLAESYEANSFEEAMASNPTNIEFEKPEKWVAPYPKYEYGWWETFLPPVTKA 228

Query: 64  EAE 67
           EA+
Sbjct: 229 EAK 231

[Close]

BLAST of Carg11748 vs. ExPASy TrEMBL
Match: A0A6J1G6K2 (uncharacterized protein LOC111451246 OS=Cucurbita moschata OX=3662 GN=LOC111451246 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 4.1e-30
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 4   FMKLRLDRVLAESYEADSLEQALASNPTNIEFEKPEKWVAPYPKYEYGWWEIFLPPVTKT 63
           FMKLRLDRVLAESYEADSLEQALASNPTNIEFEKPEKWVAPYPKYEYGWWEIFLPPVTKT
Sbjct: 165 FMKLRLDRVLAESYEADSLEQALASNPTNIEFEKPEKWVAPYPKYEYGWWEIFLPPVTKT 224

Query: 64  EAEAKV 70
           EAEAKV
Sbjct: 225 EAEAKV 230

[Close]

BLAST of Carg11748 vs. ExPASy TrEMBL
Match: A0A6J1D8T3 (uncharacterized protein LOC111017973 OS=Momordica charantia OX=3673 GN=LOC111017973 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.0e-25
Identity = 56/63 (88.89%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 4   FMKLRLDRVLAESYEADSLEQALASNPTNIEFEKPEKWVAPYPKYEYGWWEIFLPPVTKT 63
           FMKLRLDRVLAESYEA+S E+A+ASNPTNIEFEKPEKWVAPYPKYEYGWWE FLPPVTK 
Sbjct: 169 FMKLRLDRVLAESYEANSFEEAMASNPTNIEFEKPEKWVAPYPKYEYGWWETFLPPVTKA 228

Query: 64  EAE 67
           EA+
Sbjct: 229 EAK 231

[Close]

BLAST of Carg11748 vs. ExPASy TrEMBL
Match: A0A5A7SVU2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G00710 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 7.5e-24
Identity = 54/63 (85.71%), Postives = 59/63 (93.65%), Query Frame = 0


Query: 4   FMKLRLDRVLAESYEADSLEQALASNPTNIEFEKPEKWVAPYPKYEYGWWEIFLPPVTKT 63
           FMKLRLDRVLAESYEA+S+E+ALAS PTN+EFEKPEKWVAPY KYEYGWWE FLPPVTK 
Sbjct: 163 FMKLRLDRVLAESYEANSIEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVTKA 222

Query: 64  EAE 67
           EA+
Sbjct: 223 EAK 225

[Close]

BLAST of Carg11748 vs. ExPASy TrEMBL
Match: A0A1S3C2E4 (uncharacterized protein LOC103496259 OS=Cucumis melo OX=3656 GN=LOC103496259 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 7.5e-24
Identity = 54/63 (85.71%), Postives = 59/63 (93.65%), Query Frame = 0


Query: 4   FMKLRLDRVLAESYEADSLEQALASNPTNIEFEKPEKWVAPYPKYEYGWWEIFLPPVTKT 63
           FMKLRLDRVLAESYEA+S+E+ALAS PTN+EFEKPEKWVAPY KYEYGWWE FLPPVTK 
Sbjct: 163 FMKLRLDRVLAESYEANSIEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVTKA 222

Query: 64  EAE 67
           EA+
Sbjct: 223 EAK 225

[Close]

BLAST of Carg11748 vs. ExPASy TrEMBL
Match: A0A6J1JCP0 (uncharacterized protein LOC111484525 OS=Cucurbita maxima OX=3661 GN=LOC111484525 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.7e-23
Identity = 54/63 (85.71%), Postives = 58/63 (92.06%), Query Frame = 0


Query: 4   FMKLRLDRVLAESYEADSLEQALASNPTNIEFEKPEKWVAPYPKYEYGWWEIFLPPVTKT 63
           FMKLRLDRVLAESYEA+SLE+ALAS PTN+EFEKPEKWVAPY KYEYGWWE FLPPV K 
Sbjct: 170 FMKLRLDRVLAESYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKA 229

Query: 64  EAE 67
           EA+
Sbjct: 230 EAK 232

[Close]

BLAST of Carg11748 vs. TAIR 10
Match: AT5G58250.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2488 (InterPro:IPR019616); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 99.8 bits (247), Expect = 1.2e-21
Identity = 44/62 (70.97%), Postives = 53/62 (85.48%), Query Frame = 0


Query: 4   FMKLRLDRVLAESYEADSLEQALASNPTNIEFEKPEKWVAPYPKYEYGWWEIFLPPVTKT 63
           FMKLRLDRVL +S+EA SL++ALASNPT +EF+KP+ WVAPYPKYE GWW+ FLP VT+ 
Sbjct: 149 FMKLRLDRVLYDSFEATSLDEALASNPTTLEFDKPKNWVAPYPKYEPGWWDTFLPKVTQE 208

Query: 64  EA 66
            A
Sbjct: 209 SA 210

The following BLAST results are available for this feature:

BLAST of Carg11748 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7035328.1	3.9e-43	100.00	hypothetical protein SDJN02_02123, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022947359.1	8.5e-30	100.00	uncharacterized protein LOC111451246 [Cucurbita moschata]	[more]
KAG6605371.1	8.5e-30	100.00	putative protein ycf54, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023533874.1	9.4e-29	96.97	uncharacterized protein LOC111795592 [Cucurbita pepo subsp. pepo]	[more]
XP_022149576.1	6.3e-25	88.89	uncharacterized protein LOC111017973 [Momordica charantia]	[more]

BLAST of Carg11748 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg11748 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G6K2	4.1e-30	100.00	uncharacterized protein LOC111451246 OS=Cucurbita moschata OX=3662 GN=LOC1114512...	[more]
A0A6J1D8T3	3.0e-25	88.89	uncharacterized protein LOC111017973 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A5A7SVU2	7.5e-24	85.71	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C2E4	7.5e-24	85.71	uncharacterized protein LOC103496259 OS=Cucumis melo OX=3656 GN=LOC103496259 PE=...	[more]
A0A6J1JCP0	1.7e-23	85.71	uncharacterized protein LOC111484525 OS=Cucurbita maxima OX=3661 GN=LOC111484525...	[more]

BLAST of Carg11748 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58250.1	1.2e-21	70.97	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019616	Ycf54 protein	PANTHER	PTHR35319	FAMILY NOT NAMED	coord: 3..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11748-RA	Carg11748-RA	mRNA