Carg11700 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg11700
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	MYB transcription factor
Location	Carg_Chr02: 3560251 .. 3561238 (-)
RNA-Seq Expression	Carg11700
Synteny	Carg11700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAGGGTCAAGAAGCAGCAGCAGCAGCAGCAGTGGTGGTGGTGGTGGCGGCGGCGGCGGCTGCGGCAGTGGAAGCAGTGGCGTTACGTGCTACAGAGGCCACTGGCGGCCGGCGGAGGACAATAAACTCCGCCAGCTTGTTGAACAGTTTGGGCCTCAGAATTGGAATTACATTGCTGAACATTTTGAGGCTAGATCTGGTATTGTTAATTTCATCTCCAAATTTCTCTCTCTATGAACGGCTGCGCCGCCGTGGCCGGCGGAGTATAGAATGGTTTTCCGATGAGGGTTTTCAATACTGTTTATTTATTTATTTTTTTTTTTTTGGGGGTTGAAAAACATATATTAAATAACATTTTTGACGTTTTTAATTCAAAATTTGTAAGGATTTAATTGAAAAATTGATAGCTTGAAGGAGTGAAGTAAAAAAAAAAAAAAAAAAAAAATCATTAATTAAACAAAATTTTACTCTTTATAATTTTTGAGGATATGTTGTTTAATATTCTTTTAAAATTTTTGTTTTCCTAGGAAAAAGCTGTAGATTGAGATGGTATAATCAACTGGATCCGAATATAAACAAGAACCCATTTACGGAGGAAGAAGAAGAGAGGCTTTTAATATTTCAACGGCTTCACGGGAACAAATGGGCGTTAATAGCCCGACACTTCAAAGGAAGAACAGACAATGCAGTGAAGAATCACTACCATGTTATAATGGCCAGAAGGAGAAGAGAACGTTTCACAATATTCACTAACCACAACAACATCTTAAGTTCTCGTCATTGCTTATTGCCCTTTTCGAACGTCCTCCAATCCTCCCATCAAAAGATGACTCCTAAATGGAGTCCTCTCACGGCGGGTCCGACGCTCGAAAATGGGCGTGGGAAGTCGGTGGCGGTGGTGGCATCGTCGGGGTCGGAAGAGATGAAGGGGGAGCAGAAGAGGAGGATTCCATTTATAGACTTTCTTGGTATGGGAAGCTCATAG

mRNA sequence

ATGATAGGGTCAAGAAGCAGCAGCAGCAGCAGCAGTGGTGGTGGTGGTGGCGGCGGCGGCGGCTGCGGCAGTGGAAGCAGTGGCGTTACGTGCTACAGAGGCCACTGGCGGCCGGCGGAGGACAATAAACTCCGCCAGCTTGTTGAACAGTTTGGGCCTCAGAATTGGAATTACATTGCTGAACATTTTGAGGCTAGATCTGGAAAAAGCTGTAGATTGAGATGGTATAATCAACTGGATCCGAATATAAACAAGAACCCATTTACGGAGGAAGAAGAAGAGAGGCTTTTAATATTTCAACGGCTTCACGGGAACAAATGGGCGTTAATAGCCCGACACTTCAAAGGAAGAACAGACAATGCAGTGAAGAATCACTACCATGTTATAATGGCCAGAAGGAGAAGAGAACGTTTCACAATATTCACTAACCACAACAACATCTTAAGTTCTCGTCATTGCTTATTGCCCTTTTCGAACGTCCTCCAATCCTCCCATCAAAAGATGACTCCTAAATGGAGTCCTCTCACGGCGGGTCCGACGCTCGAAAATGGGCGTGGGAAGTCGGTGGCGGTGGTGGCATCGTCGGGGTCGGAAGAGATGAAGGGGGAGCAGAAGAGGAGGATTCCATTTATAGACTTTCTTGGTATGGGAAGCTCATAG

Coding sequence (CDS)

ATGATAGGGTCAAGAAGCAGCAGCAGCAGCAGCAGTGGTGGTGGTGGTGGCGGCGGCGGCGGCTGCGGCAGTGGAAGCAGTGGCGTTACGTGCTACAGAGGCCACTGGCGGCCGGCGGAGGACAATAAACTCCGCCAGCTTGTTGAACAGTTTGGGCCTCAGAATTGGAATTACATTGCTGAACATTTTGAGGCTAGATCTGGAAAAAGCTGTAGATTGAGATGGTATAATCAACTGGATCCGAATATAAACAAGAACCCATTTACGGAGGAAGAAGAAGAGAGGCTTTTAATATTTCAACGGCTTCACGGGAACAAATGGGCGTTAATAGCCCGACACTTCAAAGGAAGAACAGACAATGCAGTGAAGAATCACTACCATGTTATAATGGCCAGAAGGAGAAGAGAACGTTTCACAATATTCACTAACCACAACAACATCTTAAGTTCTCGTCATTGCTTATTGCCCTTTTCGAACGTCCTCCAATCCTCCCATCAAAAGATGACTCCTAAATGGAGTCCTCTCACGGCGGGTCCGACGCTCGAAAATGGGCGTGGGAAGTCGGTGGCGGTGGTGGCATCGTCGGGGTCGGAAGAGATGAAGGGGGAGCAGAAGAGGAGGATTCCATTTATAGACTTTCTTGGTATGGGAAGCTCATAG

Protein sequence

MIGSRSSSSSSSGGGGGGGGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFEARSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDNAVKNHYHVIMARRRRERFTIFTNHNNILSSRHCLLPFSNVLQSSHQKMTPKWSPLTAGPTLENGRGKSVAVVASSGSEEMKGEQKRRIPFIDFLGMGSS

Homology

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BLAST of Carg11700 vs. NCBI nr
Match: KAG7035282.1 (Transcription factor MYB52, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 440.3 bits (1131), Expect = 1.0e-119
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0


Query: 1   MIGSRSSSSSSSGGGGGGGGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIA 60
           MIGSRSSSSSSSGGGGGGGGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIA
Sbjct: 1   MIGSRSSSSSSSGGGGGGGGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIA 60

Query: 61  EHFEARSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDN 120
           EHFEARSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDN
Sbjct: 61  EHFEARSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDN 120

Query: 121 AVKNHYHVIMARRRRERFTIFTNHNNILSSRHCLLPFSNVLQSSHQKMTPKWSPLTAGPT 180
           AVKNHYHVIMARRRRERFTIFTNHNNILSSRHCLLPFSNVLQSSHQKMTPKWSPLTAGPT
Sbjct: 121 AVKNHYHVIMARRRRERFTIFTNHNNILSSRHCLLPFSNVLQSSHQKMTPKWSPLTAGPT 180

Query: 181 LENGRGKSVAVVASSGSEEMKGEQKRRIPFIDFLGMGSS 220
           LENGRGKSVAVVASSGSEEMKGEQKRRIPFIDFLGMGSS
Sbjct: 181 LENGRGKSVAVVASSGSEEMKGEQKRRIPFIDFLGMGSS 219

[Close]

BLAST of Carg11700 vs. NCBI nr
Match: KAG6605324.1 (Transcription factor MYB52, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 434.1 bits (1115), Expect = 7.1e-118
Identity = 216/219 (98.63%), Postives = 216/219 (98.63%), Query Frame = 0


Query: 1   MIGSRSSSSSSSGGGGGGGGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIA 60
           MIGSRSSSSSS GGGGGGGGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIA
Sbjct: 1   MIGSRSSSSSSGGGGGGGGGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIA 60

Query: 61  EHFEARSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDN 120
           EHFEARSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDN
Sbjct: 61  EHFEARSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDN 120

Query: 121 AVKNHYHVIMARRRRERFTIFTNHNNILSSRHCLLPFSNVLQSSHQKMTPKWSPLTAGPT 180
           AVKNHYHVIMARRRRERFTIFTNHNNILSSRHCLLPFSNVLQSSHQKMTPKWSPLTAGPT
Sbjct: 121 AVKNHYHVIMARRRRERFTIFTNHNNILSSRHCLLPFSNVLQSSHQKMTPKWSPLTAGPT 180

Query: 181 LENGRGKSVAVVASSGSEEMKGEQKRRIPFIDFLGMGSS 220
           LENGRGKSVAVV SS SEEMKGEQKRRIPFIDFLGMGSS
Sbjct: 181 LENGRGKSVAVVTSSESEEMKGEQKRRIPFIDFLGMGSS 219

[Close]

BLAST of Carg11700 vs. NCBI nr
Match: XP_023533866.1 (transcription factor CSA-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 428.3 bits (1100), Expect = 3.9e-116
Identity = 215/219 (98.17%), Postives = 217/219 (99.09%), Query Frame = 0


Query: 1   MIGSRSSSSSSSGGGGGGGGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIA 60
           MIGSR SSSSSSGGGGGGGGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIA
Sbjct: 3   MIGSR-SSSSSSGGGGGGGGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIA 62

Query: 61  EHFEARSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDN 120
           EHFEARSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDN
Sbjct: 63  EHFEARSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDN 122

Query: 121 AVKNHYHVIMARRRRERFTIFTNHNNILSSRHCLLPFSNVLQSSHQKMTPKWSPLTAGPT 180
           AVKNHYHVIMARRRRERFTIFTN++NIL SRHCLLPFSNVLQSSHQKMTPKWSPLTAGPT
Sbjct: 123 AVKNHYHVIMARRRRERFTIFTNNSNILRSRHCLLPFSNVLQSSHQKMTPKWSPLTAGPT 182

Query: 181 LENGRGKSVAVVASSGSEEMKGEQKRRIPFIDFLGMGSS 220
           LENGRGKSVAVVASSGSEEMKGEQKRRIPFIDFLGMGSS
Sbjct: 183 LENGRGKSVAVVASSGSEEMKGEQKRRIPFIDFLGMGSS 220

[Close]

BLAST of Carg11700 vs. NCBI nr
Match: XP_022947674.1 (transcription factor CSA-like [Cucurbita moschata])

HSP 1 Score: 412.5 bits (1059), Expect = 2.2e-111
Identity = 210/223 (94.17%), Postives = 212/223 (95.07%), Query Frame = 0


Query: 1   MIGSRSSSSSSSGGGGGGGGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIA 60
           MIGSRSSSSSS   GGGGGGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIA
Sbjct: 3   MIGSRSSSSSS---GGGGGGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIA 62

Query: 61  EHFEARSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDN 120
           EHFEARSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDN
Sbjct: 63  EHFEARSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDN 122

Query: 121 AVKNHYHVIMARRRRERFTIFTNHNNILSSRHCLLPFSNVLQSSHQKMTPKWSPLTAGPT 180
           AVKNHYHVIMARRRRERFTIFTN+NNIL SRHCLL FSNVLQSSHQKMTPKWSPLTAGP 
Sbjct: 123 AVKNHYHVIMARRRRERFTIFTNNNNILRSRHCLLSFSNVLQSSHQKMTPKWSPLTAGPM 182

Query: 181 LENGRGKSVAVVASSGS----EEMKGEQKRRIPFIDFLGMGSS 220
           LENGRGKSVA VASSGS    EEMKGE+KRRIPFIDFLGMGSS
Sbjct: 183 LENGRGKSVAAVASSGSGEREEEMKGEKKRRIPFIDFLGMGSS 222

[Close]

BLAST of Carg11700 vs. NCBI nr
Match: XP_023007242.1 (transcription factor CSA-like [Cucurbita maxima])

HSP 1 Score: 403.7 bits (1036), Expect = 1.0e-108
Identity = 205/220 (93.18%), Postives = 208/220 (94.55%), Query Frame = 0


Query: 5   RSSSSSSSGGGGGGGGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFE 64
           RS SSSSS GGGGG GGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFE
Sbjct: 3   RSRSSSSSSGGGGGSGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFE 62

Query: 65  ARSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDNAVKN 124
           ARSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQ+LHGNKWALIARH KGRTDNAVKN
Sbjct: 63  ARSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQQLHGNKWALIARHLKGRTDNAVKN 122

Query: 125 HYHVIMARRRRERFTIFT-NHNNILSSRHCLLPFSNVLQSSHQKMTPKWSPLTAGPTLEN 184
           HYHVIMARRRRERFTIFT N+NNIL SRHCLLPFSNVLQSSHQK+TPKWSPLT GPTLEN
Sbjct: 123 HYHVIMARRRRERFTIFTNNNNNILRSRHCLLPFSNVLQSSHQKITPKWSPLTVGPTLEN 182

Query: 185 GRGKSVAVVASSGS----EEMKGEQKRRIPFIDFLGMGSS 220
           GRGKS AVVASSGS    EEMKGEQKRRIPFIDFLGMGSS
Sbjct: 183 GRGKSAAVVASSGSDEREEEMKGEQKRRIPFIDFLGMGSS 222

[Close]

BLAST of Carg11700 vs. ExPASy Swiss-Prot
Match: Q6R0C4 (Transcription factor MYB52 OS=Arabidopsis thaliana OX=3702 GN=MYB52 PE=2 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 4.4e-46
Identity = 83/107 (77.57%), Postives = 92/107 (85.98%), Query Frame = 0


Query: 31  CYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFEARSGKSCRLRWYNQLDPNINKNPFTE 90
           C RGHWRPAED KLR+LVEQFGP NWN IA+    RSGKSCRLRW+NQLDP IN+NPFTE
Sbjct: 3   CSRGHWRPAEDEKLRELVEQFGPHNWNAIAQKLSGRSGKSCRLRWFNQLDPRINRNPFTE 62

Query: 91  EEEERLLIFQRLHGNKWALIARHFKGRTDNAVKNHYHVIMARRRRER 138
           EEEERLL   R+HGN+W++IAR F GRTDNAVKNH+HVIMARR RER
Sbjct: 63  EEEERLLASHRIHGNRWSVIARFFPGRTDNAVKNHWHVIMARRGRER 109

[Close]

BLAST of Carg11700 vs. ExPASy Swiss-Prot
Match: Q5NBM8 (Transcription factor CSA OS=Oryza sativa subsp. japonica OX=39947 GN=CSA PE=2 SV=2)

HSP 1 Score: 179.5 bits (454), Expect = 4.2e-44
Identity = 87/131 (66.41%), Postives = 97/131 (74.05%), Query Frame = 0


Query: 20  GGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFEARSGKSCRLRWYNQL 79
           GG G G  G  C RGHWRPAED KL+ LV Q+GPQNWN IAE  + RSGKSCRLRW+NQL
Sbjct: 36  GGHGGGVQGKLCARGHWRPAEDAKLKDLVAQYGPQNWNLIAEKLDGRSGKSCRLRWFNQL 95

Query: 80  DPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDNAVKNHYHVIMARRRRERFT 139
           DP IN+  FTEEEEERL+   R +GNKWALIAR F GRTDNAVKNH+HV+MARR RE+  
Sbjct: 96  DPRINRRAFTEEEEERLMAAHRAYGNKWALIARLFPGRTDNAVKNHWHVLMARRHREQSG 155

Query: 140 IFTNHNNILSS 151
            F       SS
Sbjct: 156 AFRRRKPSSSS 166

[Close]

BLAST of Carg11700 vs. ExPASy Swiss-Prot
Match: Q9FX36 (Transcription factor MYB54 OS=Arabidopsis thaliana OX=3702 GN=MYB54 PE=1 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 5.4e-44
Identity = 79/108 (73.15%), Postives = 90/108 (83.33%), Query Frame = 0


Query: 29  VTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFEARSGKSCRLRWYNQLDPNINKNPF 88
           + C RGHWRPAED KL+ LVEQ+GP NWN IA     RSGKSCRLRW+NQLDP IN+NPF
Sbjct: 2   IMCSRGHWRPAEDEKLKDLVEQYGPHNWNAIALKLPGRSGKSCRLRWFNQLDPRINRNPF 61

Query: 89  TEEEEERLLIFQRLHGNKWALIARHFKGRTDNAVKNHYHVIMARRRRE 137
           TEEEEERLL   R+HGN+W++IAR F GRTDNAVKNH+HVIMARR R+
Sbjct: 62  TEEEEERLLAAHRIHGNRWSIIARLFPGRTDNAVKNHWHVIMARRTRQ 109

[Close]

BLAST of Carg11700 vs. ExPASy Swiss-Prot
Match: Q6R053 (Transcription factor MYB56 OS=Arabidopsis thaliana OX=3702 GN=MYB56 PE=1 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 5.1e-42
Identity = 81/113 (71.68%), Postives = 89/113 (78.76%), Query Frame = 0


Query: 24  SGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFEARSGKSCRLRWYNQLDPNI 83
           SG +   C RGHWRP ED KL++LV QFGPQNWN I+ H   RSGKSCRLRW+NQLDP I
Sbjct: 84  SGINTKVCSRGHWRPTEDAKLKELVAQFGPQNWNLISNHLLGRSGKSCRLRWFNQLDPRI 143

Query: 84  NKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDNAVKNHYHVIMARRRRE 137
           NK  FTEEEE RLL   R +GNKWALI+R F GRTDNAVKNH+HVIMARR RE
Sbjct: 144 NKRAFTEEEEFRLLAAHRAYGNKWALISRLFPGRTDNAVKNHWHVIMARRTRE 196

[Close]

BLAST of Carg11700 vs. ExPASy Swiss-Prot
Match: Q9SEZ4 (Transcription factor MYB105 OS=Arabidopsis thaliana OX=3702 GN=MYB105 PE=1 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 6.6e-42
Identity = 82/135 (60.74%), Postives = 102/135 (75.56%), Query Frame = 0


Query: 22  CGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFEARSGKSCRLRWYNQLDP 81
           CG  SS  +  RGHWRPAED KL++LV  +GPQNWN IAE  + RSGKSCRLRW+NQLDP
Sbjct: 97  CGH-SSKASVSRGHWRPAEDTKLKELVAVYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDP 156

Query: 82  NINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDNAVKNHYHVIMARRRRERFTIF 141
            IN+  FTEEEEERL+   RL+GNKWA+IAR F GRTDN+VKNH+HVIMAR+ RE+ + +
Sbjct: 157 RINRRAFTEEEEERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVIMARKFREQSSSY 216

Query: 142 TNHNNILSSRHCLLP 157
                ++S +  + P
Sbjct: 217 RRRKTMVSLKPLINP 230

[Close]

BLAST of Carg11700 vs. ExPASy TrEMBL
Match: A0A6J1G7J0 (transcription factor CSA-like OS=Cucurbita moschata OX=3662 GN=LOC111451467 PE=4 SV=1)

HSP 1 Score: 412.5 bits (1059), Expect = 1.1e-111
Identity = 210/223 (94.17%), Postives = 212/223 (95.07%), Query Frame = 0


Query: 1   MIGSRSSSSSSSGGGGGGGGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIA 60
           MIGSRSSSSSS   GGGGGGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIA
Sbjct: 3   MIGSRSSSSSS---GGGGGGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIA 62

Query: 61  EHFEARSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDN 120
           EHFEARSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDN
Sbjct: 63  EHFEARSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDN 122

Query: 121 AVKNHYHVIMARRRRERFTIFTNHNNILSSRHCLLPFSNVLQSSHQKMTPKWSPLTAGPT 180
           AVKNHYHVIMARRRRERFTIFTN+NNIL SRHCLL FSNVLQSSHQKMTPKWSPLTAGP 
Sbjct: 123 AVKNHYHVIMARRRRERFTIFTNNNNILRSRHCLLSFSNVLQSSHQKMTPKWSPLTAGPM 182

Query: 181 LENGRGKSVAVVASSGS----EEMKGEQKRRIPFIDFLGMGSS 220
           LENGRGKSVA VASSGS    EEMKGE+KRRIPFIDFLGMGSS
Sbjct: 183 LENGRGKSVAAVASSGSGEREEEMKGEKKRRIPFIDFLGMGSS 222

[Close]

BLAST of Carg11700 vs. ExPASy TrEMBL
Match: A0A6J1KY48 (transcription factor CSA-like OS=Cucurbita maxima OX=3661 GN=LOC111499785 PE=4 SV=1)

HSP 1 Score: 403.7 bits (1036), Expect = 5.0e-109
Identity = 205/220 (93.18%), Postives = 208/220 (94.55%), Query Frame = 0


Query: 5   RSSSSSSSGGGGGGGGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFE 64
           RS SSSSS GGGGG GGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFE
Sbjct: 3   RSRSSSSSSGGGGGSGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFE 62

Query: 65  ARSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDNAVKN 124
           ARSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQ+LHGNKWALIARH KGRTDNAVKN
Sbjct: 63  ARSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQQLHGNKWALIARHLKGRTDNAVKN 122

Query: 125 HYHVIMARRRRERFTIFT-NHNNILSSRHCLLPFSNVLQSSHQKMTPKWSPLTAGPTLEN 184
           HYHVIMARRRRERFTIFT N+NNIL SRHCLLPFSNVLQSSHQK+TPKWSPLT GPTLEN
Sbjct: 123 HYHVIMARRRRERFTIFTNNNNNILRSRHCLLPFSNVLQSSHQKITPKWSPLTVGPTLEN 182

Query: 185 GRGKSVAVVASSGS----EEMKGEQKRRIPFIDFLGMGSS 220
           GRGKS AVVASSGS    EEMKGEQKRRIPFIDFLGMGSS
Sbjct: 183 GRGKSAAVVASSGSDEREEEMKGEQKRRIPFIDFLGMGSS 222

[Close]

BLAST of Carg11700 vs. ExPASy TrEMBL
Match: A0A6J1EVU5 (transcription factor CSA-like OS=Cucurbita moschata OX=3662 GN=LOC111438332 PE=4 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 2.4e-87
Identity = 169/215 (78.60%), Postives = 179/215 (83.26%), Query Frame = 0


Query: 7   SSSSSSGGGGGGGGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFEAR 66
           S SSSSGG  GG GG G G+S V+CYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFE R
Sbjct: 4   SRSSSSGGSSGGVGGGGCGNSSVSCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFEGR 63

Query: 67  SGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDNAVKNHY 126
           SGKSCRLRWYNQLDPNINKNPFTEEEEERLL+FQ+LHGNKWALIARHFKGRTDNAVKNHY
Sbjct: 64  SGKSCRLRWYNQLDPNINKNPFTEEEEERLLMFQQLHGNKWALIARHFKGRTDNAVKNHY 123

Query: 127 HVIMARRRRERFTIFTNH--NNILSSRHCLLPFSNVLQSSHQKMTPKWSPLTAGPTLENG 186
           HVIMARRRRERFTIFTNH  NNIL +RH LLPFS VLQSS QK   KW+PL A   L +G
Sbjct: 124 HVIMARRRRERFTIFTNHNNNNILRTRHSLLPFSKVLQSSQQKTAVKWTPLMATTVLRHG 183

Query: 187 RGKSVAVVASSGSEEMKGEQKRRIPFIDFLGMGSS 220
            G      A     + + EQKRR+PFIDFLGMGSS
Sbjct: 184 GGMLAPTAAVVSGSDEREEQKRRVPFIDFLGMGSS 218

[Close]

BLAST of Carg11700 vs. ExPASy TrEMBL
Match: A0A6J1I2H4 (transcription factor CSA-like OS=Cucurbita maxima OX=3661 GN=LOC111470309 PE=4 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 1.2e-86
Identity = 167/215 (77.67%), Postives = 179/215 (83.26%), Query Frame = 0


Query: 7   SSSSSSGGGGGGGGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFEAR 66
           S SSSSGG  GG GG G G+S V+CYRGHWRPAEDNKLRQLVEQ GPQNWNYIAEHFE R
Sbjct: 4   SRSSSSGGSSGGVGGGGCGNSSVSCYRGHWRPAEDNKLRQLVEQLGPQNWNYIAEHFEGR 63

Query: 67  SGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDNAVKNHY 126
           SGKSCRLRWYNQLDPNINKNPFTEEEEERLL+FQ+LHGNKWALIARHFKGRTDNAVKNHY
Sbjct: 64  SGKSCRLRWYNQLDPNINKNPFTEEEEERLLMFQQLHGNKWALIARHFKGRTDNAVKNHY 123

Query: 127 HVIMARRRRERFTIFTNH--NNILSSRHCLLPFSNVLQSSHQKMTPKWSPLTAGPTLENG 186
           HVIMARRRRERFTIFTNH  NNIL +RH LLPFS VLQSSHQK   KW+PL A   L +G
Sbjct: 124 HVIMARRRRERFTIFTNHNNNNILRTRHSLLPFSKVLQSSHQKTAIKWTPLMATTVLRHG 183

Query: 187 RGKSVAVVASSGSEEMKGEQKRRIPFIDFLGMGSS 220
            G        +   + + +QKRR+PFIDFLGMGSS
Sbjct: 184 GGMLAPTATVAVGSDEREDQKRRVPFIDFLGMGSS 218

[Close]

BLAST of Carg11700 vs. ExPASy TrEMBL
Match: A0A5D3BQW6 (Transcriptional activator Myb OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00600 PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 1.2e-81
Identity = 173/221 (78.28%), Postives = 183/221 (82.81%), Query Frame = 0


Query: 5   RSSSSSSSGGGGGGGGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFE 64
           RS SSSSSGG  GGGG    GSSGV+CYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFE
Sbjct: 3   RSRSSSSSGGSSGGGG----GSSGVSCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFE 62

Query: 65  ARSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDNAVKN 124
            RSGKSCRLRWYNQLDPNINKNPF+EEEEERLL+FQ+LHGNKWALIARHFKGRTDNAVKN
Sbjct: 63  GRSGKSCRLRWYNQLDPNINKNPFSEEEEERLLMFQQLHGNKWALIARHFKGRTDNAVKN 122

Query: 125 HYHVIMARRRRERFTIFTNHN-NILSSRHCLLPFSNVLQSSHQKMTP--KWSPLTAGP-- 184
           HYHVIMARRRRERFTIFTNHN N  + RH LL FS        KMT   KW+PLTAG   
Sbjct: 123 HYHVIMARRRRERFTIFTNHNKNNNTIRHSLLSFS--------KMTTAVKWTPLTAGAPV 182

Query: 185 TLENGRGK-SVAVVASSGSEEMKGEQKRRIPFIDFLGMGSS 220
            L NGRGK S+  V +SGS E + + KRRIPFIDFLGMGSS
Sbjct: 183 LLGNGRGKSSLTAVVASGSGEGE-DHKRRIPFIDFLGMGSS 210

[Close]

BLAST of Carg11700 vs. TAIR 10
Match: AT4G33450.1 (myb domain protein 69 )

HSP 1 Score: 187.6 bits (475), Expect = 1.1e-47
Identity = 83/110 (75.45%), Postives = 94/110 (85.45%), Query Frame = 0


Query: 30  TCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFEARSGKSCRLRWYNQLDPNINKNPFT 89
           +C RGHWRP ED+ LRQLVEQ+GP+NWN+IA+H   RSGKSCRLRWYNQLDPNI K PFT
Sbjct: 16  SCQRGHWRPVEDDNLRQLVEQYGPKNWNFIAQHLYGRSGKSCRLRWYNQLDPNITKKPFT 75

Query: 90  EEEEERLLIFQRLHGNKWALIARHFKGRTDNAVKNHYHVIMARRRRERFT 140
           EEEEERLL   R+ GN+WA IAR F GRTDNAVKNH+HVIMARR+RE F+
Sbjct: 76  EEEEERLLKAHRIQGNRWASIARLFPGRTDNAVKNHFHVIMARRKRENFS 125

[Close]

BLAST of Carg11700 vs. TAIR 10
Match: AT1G17950.1 (myb domain protein 52 )

HSP 1 Score: 186.0 bits (471), Expect = 3.2e-47
Identity = 83/107 (77.57%), Postives = 92/107 (85.98%), Query Frame = 0


Query: 31  CYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFEARSGKSCRLRWYNQLDPNINKNPFTE 90
           C RGHWRPAED KLR+LVEQFGP NWN IA+    RSGKSCRLRW+NQLDP IN+NPFTE
Sbjct: 3   CSRGHWRPAEDEKLRELVEQFGPHNWNAIAQKLSGRSGKSCRLRWFNQLDPRINRNPFTE 62

Query: 91  EEEERLLIFQRLHGNKWALIARHFKGRTDNAVKNHYHVIMARRRRER 138
           EEEERLL   R+HGN+W++IAR F GRTDNAVKNH+HVIMARR RER
Sbjct: 63  EEEERLLASHRIHGNRWSVIARFFPGRTDNAVKNHWHVIMARRGRER 109

[Close]

BLAST of Carg11700 vs. TAIR 10
Match: AT1G73410.1 (myb domain protein 54 )

HSP 1 Score: 179.1 bits (453), Expect = 3.9e-45
Identity = 79/108 (73.15%), Postives = 90/108 (83.33%), Query Frame = 0


Query: 29  VTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFEARSGKSCRLRWYNQLDPNINKNPF 88
           + C RGHWRPAED KL+ LVEQ+GP NWN IA     RSGKSCRLRW+NQLDP IN+NPF
Sbjct: 2   IMCSRGHWRPAEDEKLKDLVEQYGPHNWNAIALKLPGRSGKSCRLRWFNQLDPRINRNPF 61

Query: 89  TEEEEERLLIFQRLHGNKWALIARHFKGRTDNAVKNHYHVIMARRRRE 137
           TEEEEERLL   R+HGN+W++IAR F GRTDNAVKNH+HVIMARR R+
Sbjct: 62  TEEEEERLLAAHRIHGNRWSIIARLFPGRTDNAVKNHWHVIMARRTRQ 109

[Close]

BLAST of Carg11700 vs. TAIR 10
Match: AT5G17800.1 (myb domain protein 56 )

HSP 1 Score: 172.6 bits (436), Expect = 3.6e-43
Identity = 81/113 (71.68%), Postives = 89/113 (78.76%), Query Frame = 0


Query: 24  SGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFEARSGKSCRLRWYNQLDPNI 83
           SG +   C RGHWRP ED KL++LV QFGPQNWN I+ H   RSGKSCRLRW+NQLDP I
Sbjct: 84  SGINTKVCSRGHWRPTEDAKLKELVAQFGPQNWNLISNHLLGRSGKSCRLRWFNQLDPRI 143

Query: 84  NKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDNAVKNHYHVIMARRRRE 137
           NK  FTEEEE RLL   R +GNKWALI+R F GRTDNAVKNH+HVIMARR RE
Sbjct: 144 NKRAFTEEEEFRLLAAHRAYGNKWALISRLFPGRTDNAVKNHWHVIMARRTRE 196

[Close]

BLAST of Carg11700 vs. TAIR 10
Match: AT1G69560.1 (myb domain protein 105 )

HSP 1 Score: 172.2 bits (435), Expect = 4.7e-43
Identity = 82/135 (60.74%), Postives = 102/135 (75.56%), Query Frame = 0


Query: 22  CGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFEARSGKSCRLRWYNQLDP 81
           CG  SS  +  RGHWRPAED KL++LV  +GPQNWN IAE  + RSGKSCRLRW+NQLDP
Sbjct: 97  CGH-SSKASVSRGHWRPAEDTKLKELVAVYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDP 156

Query: 82  NINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDNAVKNHYHVIMARRRRERFTIF 141
            IN+  FTEEEEERL+   RL+GNKWA+IAR F GRTDN+VKNH+HVIMAR+ RE+ + +
Sbjct: 157 RINRRAFTEEEEERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVIMARKFREQSSSY 216

Query: 142 TNHNNILSSRHCLLP 157
                ++S +  + P
Sbjct: 217 RRRKTMVSLKPLINP 230

The following BLAST results are available for this feature:

BLAST of Carg11700 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7035282.1	1.0e-119	100.00	Transcription factor MYB52, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6605324.1	7.1e-118	98.63	Transcription factor MYB52, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023533866.1	3.9e-116	98.17	transcription factor CSA-like [Cucurbita pepo subsp. pepo]	[more]
XP_022947674.1	2.2e-111	94.17	transcription factor CSA-like [Cucurbita moschata]	[more]
XP_023007242.1	1.0e-108	93.18	transcription factor CSA-like [Cucurbita maxima]	[more]

BLAST of Carg11700 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6R0C4	4.4e-46	77.57	Transcription factor MYB52 OS=Arabidopsis thaliana OX=3702 GN=MYB52 PE=2 SV=1	[more]
Q5NBM8	4.2e-44	66.41	Transcription factor CSA OS=Oryza sativa subsp. japonica OX=39947 GN=CSA PE=2 SV...	[more]
Q9FX36	5.4e-44	73.15	Transcription factor MYB54 OS=Arabidopsis thaliana OX=3702 GN=MYB54 PE=1 SV=1	[more]
Q6R053	5.1e-42	71.68	Transcription factor MYB56 OS=Arabidopsis thaliana OX=3702 GN=MYB56 PE=1 SV=1	[more]
Q9SEZ4	6.6e-42	60.74	Transcription factor MYB105 OS=Arabidopsis thaliana OX=3702 GN=MYB105 PE=1 SV=1	[more]

BLAST of Carg11700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G7J0	1.1e-111	94.17	transcription factor CSA-like OS=Cucurbita moschata OX=3662 GN=LOC111451467 PE=4...	[more]
A0A6J1KY48	5.0e-109	93.18	transcription factor CSA-like OS=Cucurbita maxima OX=3661 GN=LOC111499785 PE=4 S...	[more]
A0A6J1EVU5	2.4e-87	78.60	transcription factor CSA-like OS=Cucurbita moschata OX=3662 GN=LOC111438332 PE=4...	[more]
A0A6J1I2H4	1.2e-86	77.67	transcription factor CSA-like OS=Cucurbita maxima OX=3661 GN=LOC111470309 PE=4 S...	[more]
A0A5D3BQW6	1.2e-81	78.28	Transcriptional activator Myb OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]

BLAST of Carg11700 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G33450.1	1.1e-47	75.45	myb domain protein 69	[more]
AT1G17950.1	3.2e-47	77.57	myb domain protein 52	[more]
AT1G73410.1	3.9e-45	73.15	myb domain protein 54	[more]
AT5G17800.1	3.6e-43	71.68	myb domain protein 56	[more]
AT1G69560.1	4.7e-43	60.74	myb domain protein 105	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 32..81 e-value: 6.4E-12 score: 55.6 coord: 84..132 e-value: 1.2E-12 score: 58.0
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 33..79 score: 10.719653
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 80..130 score: 8.791995
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 36..77 e-value: 8.05417E-12 score: 56.0446
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 87..127 e-value: 1.5906E-9 score: 49.8814
None	No IPR available	PFAM	PF13921	Myb_DNA-bind_6	coord: 36..96 e-value: 6.1E-18 score: 64.8
None	No IPR available	GENE3D	1.10.10.60		coord: 32..84 e-value: 1.3E-22 score: 81.5
None	No IPR available	GENE3D	1.10.10.60		coord: 86..152 e-value: 1.1E-15 score: 59.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	PANTHER	PTHR45614:SF100	MYB TRANSCRIPTION FACTOR	coord: 24..165
None	No IPR available	PANTHER	PTHR45614	MYB PROTEIN-RELATED	coord: 24..165
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..22 score: 5.0
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 80..134 score: 23.594931
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 33..79 score: 17.424107
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 32..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11700-RA	Carg11700-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding