Carg11683 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg11683
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RING-type E3 ubiquitin transferase
Location	Carg_Chr02: 3460923 .. 3461525 (-)
RNA-Seq Expression	Carg11683
Synteny	Carg11683

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAATTTCAAGAAAGCTCTTCACCGCTGCAGCCCCCTCCGCCCTCCACAACCCACTCCAATCCATCTCCGGTGGCGGTGGCGGTCCCGACACCAGCTTCGACACCAATGTCGTCATGGTCCTCTCCGTCCTCCTTTGCGCCTTAATTTGCTCCTTAGGCCTCAACTCCATCATCAGATGCGCTTTTAAATGCTCTCGAATTGTCGTCTCCCACGACCACCGTCCTCCCACAACCACCACCACTCCCCCGACCGGAGTTCACAAGAAGGCCATCAAGAGCTTTACTGTCGTTCAATTCTCCCCCGAGCTCAACTTCCCCGGGATGGATAGTGAGTGCATTATTTGCTTGTCGGACTTTGCTGCCGGCGACAAACTCCGGCTGCTCCCTAAGTGTAACCATGGATTTCATGTTAGGTGTATTGACAAGTGGCTAACTTCTCACTCCTCTTGCCCTAAATGTCGTCAGTGTTTAGTTCAAACTTGTCAGAAGATCGCCGGCGTTGGCTCCTCCACCTCCACCTCCGGTCAACCGCCGTCTCAGCCGCCGCCTCCGGTTTTGAACTTAACACCGGTGGATCACGAAGGTCCGGTACGAATTTAA

mRNA sequence

ATGTCAATTTCAAGAAAGCTCTTCACCGCTGCAGCCCCCTCCGCCCTCCACAACCCACTCCAATCCATCTCCGGTGGCGGTGGCGGTCCCGACACCAGCTTCGACACCAATGTCGTCATGGTCCTCTCCGTCCTCCTTTGCGCCTTAATTTGCTCCTTAGGCCTCAACTCCATCATCAGATGCGCTTTTAAATGCTCTCGAATTGTCGTCTCCCACGACCACCGTCCTCCCACAACCACCACCACTCCCCCGACCGGAGTTCACAAGAAGGCCATCAAGAGCTTTACTGTCGTTCAATTCTCCCCCGAGCTCAACTTCCCCGGGATGGATAGTGAGTGCATTATTTGCTTGTCGGACTTTGCTGCCGGCGACAAACTCCGGCTGCTCCCTAAGTGTAACCATGGATTTCATGTTAGGTGTATTGACAAGTGGCTAACTTCTCACTCCTCTTGCCCTAAATGTCGTCAGTGTTTAGTTCAAACTTGTCAGAAGATCGCCGGCGTTGGCTCCTCCACCTCCACCTCCGGTCAACCGCCGTCTCAGCCGCCGCCTCCGGTTTTGAACTTAACACCGGTGGATCACGAAGGTCCGGTACGAATTTAA

Coding sequence (CDS)

ATGTCAATTTCAAGAAAGCTCTTCACCGCTGCAGCCCCCTCCGCCCTCCACAACCCACTCCAATCCATCTCCGGTGGCGGTGGCGGTCCCGACACCAGCTTCGACACCAATGTCGTCATGGTCCTCTCCGTCCTCCTTTGCGCCTTAATTTGCTCCTTAGGCCTCAACTCCATCATCAGATGCGCTTTTAAATGCTCTCGAATTGTCGTCTCCCACGACCACCGTCCTCCCACAACCACCACCACTCCCCCGACCGGAGTTCACAAGAAGGCCATCAAGAGCTTTACTGTCGTTCAATTCTCCCCCGAGCTCAACTTCCCCGGGATGGATAGTGAGTGCATTATTTGCTTGTCGGACTTTGCTGCCGGCGACAAACTCCGGCTGCTCCCTAAGTGTAACCATGGATTTCATGTTAGGTGTATTGACAAGTGGCTAACTTCTCACTCCTCTTGCCCTAAATGTCGTCAGTGTTTAGTTCAAACTTGTCAGAAGATCGCCGGCGTTGGCTCCTCCACCTCCACCTCCGGTCAACCGCCGTCTCAGCCGCCGCCTCCGGTTTTGAACTTAACACCGGTGGATCACGAAGGTCCGGTACGAATTTAA

Protein sequence

MSISRKLFTAAAPSALHNPLQSISGGGGGPDTSFDTNVVMVLSVLLCALICSLGLNSIIRCAFKCSRIVVSHDHRPPTTTTTPPTGVHKKAIKSFTVVQFSPELNFPGMDSECIICLSDFAAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKIAGVGSSTSTSGQPPSQPPPPVLNLTPVDHEGPVRI

Homology

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BLAST of Carg11683 vs. NCBI nr
Match: KAG7035265.1 (RING-H2 finger protein ATL78, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 412.5 bits (1059), Expect = 2.0e-111
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 1   MSISRKLFTAAAPSALHNPLQSISGGGGGPDTSFDTNVVMVLSVLLCALICSLGLNSIIR 60
           MSISRKLFTAAAPSALHNPLQSISGGGGGPDTSFDTNVVMVLSVLLCALICSLGLNSIIR
Sbjct: 1   MSISRKLFTAAAPSALHNPLQSISGGGGGPDTSFDTNVVMVLSVLLCALICSLGLNSIIR 60

Query: 61  CAFKCSRIVVSHDHRPPTTTTTPPTGVHKKAIKSFTVVQFSPELNFPGMDSECIICLSDF 120
           CAFKCSRIVVSHDHRPPTTTTTPPTGVHKKAIKSFTVVQFSPELNFPGMDSECIICLSDF
Sbjct: 61  CAFKCSRIVVSHDHRPPTTTTTPPTGVHKKAIKSFTVVQFSPELNFPGMDSECIICLSDF 120

Query: 121 AAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKIAGVGSSTSTSGQPPS 180
           AAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKIAGVGSSTSTSGQPPS
Sbjct: 121 AAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKIAGVGSSTSTSGQPPS 180

Query: 181 QPPPPVLNLTPVDHEGPVRI 201
           QPPPPVLNLTPVDHEGPVRI
Sbjct: 181 QPPPPVLNLTPVDHEGPVRI 200

[Close]

BLAST of Carg11683 vs. NCBI nr
Match: KAG6605310.1 (RING-H2 finger protein ATL78, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 404.1 bits (1037), Expect = 7.2e-109
Identity = 195/196 (99.49%), Postives = 196/196 (100.00%), Query Frame = 0


Query: 1   MSISRKLFTAAAPSALHNPLQSISGGGGGPDTSFDTNVVMVLSVLLCALICSLGLNSIIR 60
           MSISRKLFTAAAPSALHNPLQSISGGGGGPDTSFDTNVVMVLSVLLCALICSLGLNSIIR
Sbjct: 1   MSISRKLFTAAAPSALHNPLQSISGGGGGPDTSFDTNVVMVLSVLLCALICSLGLNSIIR 60

Query: 61  CAFKCSRIVVSHDHRPPTTTTTPPTGVHKKAIKSFTVVQFSPELNFPGMDSECIICLSDF 120
           CAFKCSRIVVSHDHRPPTTTTTPPTGVHKKAIKSFTVVQFSPELNFPGMDSECIICLSDF
Sbjct: 61  CAFKCSRIVVSHDHRPPTTTTTPPTGVHKKAIKSFTVVQFSPELNFPGMDSECIICLSDF 120

Query: 121 AAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKIAGVGSSTSTSGQPPS 180
           AAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTC+KIAGVGSSTSTSGQPPS
Sbjct: 121 AAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCEKIAGVGSSTSTSGQPPS 180

Query: 181 QPPPPVLNLTPVDHEG 197
           QPPPPVLNLTPVDHEG
Sbjct: 181 QPPPPVLNLTPVDHEG 196

[Close]

BLAST of Carg11683 vs. NCBI nr
Match: XP_022947654.1 (RING-H2 finger protein ATL78-like [Cucurbita moschata])

HSP 1 Score: 388.3 bits (996), Expect = 4.1e-104
Identity = 191/200 (95.50%), Postives = 192/200 (96.00%), Query Frame = 0


Query: 1   MSISRKLFTAAAPSALHNPLQSISGGGGGPDTSFDTNVVMVLSVLLCALICSLGLNSIIR 60
           MSISRKLFTAAAPSALHNPLQSISGGG GPDTSFDTNVVMVLSVLLCALICSLGLNSIIR
Sbjct: 1   MSISRKLFTAAAPSALHNPLQSISGGGSGPDTSFDTNVVMVLSVLLCALICSLGLNSIIR 60

Query: 61  CAFKCSRIVVSHDHRPPTTTTTPPTGVHKKAIKSFTVVQFSPELNFPGMDSECIICLSDF 120
           CAFKCSRIVVSHDHRP  TTT PPTGVHKKAIKSFTVVQFSPELNFPGMDSECIICLSDF
Sbjct: 61  CAFKCSRIVVSHDHRPLPTTTAPPTGVHKKAIKSFTVVQFSPELNFPGMDSECIICLSDF 120

Query: 121 AAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKIAGVGSSTSTSGQPPS 180
           AAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKIAGVGSSTSTSG    
Sbjct: 121 AAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKIAGVGSSTSTSG---- 180

Query: 181 QPPPPVLNLTPVDHEGPVRI 201
           QPPPP+LNLTPVDHEGPVRI
Sbjct: 181 QPPPPILNLTPVDHEGPVRI 196

[Close]

BLAST of Carg11683 vs. NCBI nr
Match: XP_023007244.1 (RING-H2 finger protein ATL78-like [Cucurbita maxima])

HSP 1 Score: 381.7 bits (979), Expect = 3.8e-102
Identity = 189/198 (95.45%), Postives = 191/198 (96.46%), Query Frame = 0


Query: 4   SRKLFTAAAPSALHNPLQSISGGGGGPDTSFDTNVVMVLSVLLCALICSLGLNSIIRCAF 63
           SRKLFTAAAPSALHNPLQSIS  GGGPDTSFDTNVVMVLSVLLCALICSLGLNSIIRCAF
Sbjct: 17  SRKLFTAAAPSALHNPLQSIS--GGGPDTSFDTNVVMVLSVLLCALICSLGLNSIIRCAF 76

Query: 64  KCSRIVVSHDHRPPTTTTTPPTGVHKKAIKSFTVVQFSPELNFPGMDSECIICLSDFAAG 123
           KCSRIVVSHDHRPP+ TT  PTGVHKKAIKSFTVVQFSPELNFPGMDSECIICLSDFAAG
Sbjct: 77  KCSRIVVSHDHRPPSATTAVPTGVHKKAIKSFTVVQFSPELNFPGMDSECIICLSDFAAG 136

Query: 124 DKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKIAGVG--SSTSTSGQPPSQ 183
           DKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKIAGVG  +STSTSGQPPSQ
Sbjct: 137 DKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKIAGVGTSTSTSTSGQPPSQ 196

Query: 184 PPPPVLNLTPVDHEGPVR 200
           PPPPVLNLTPVDHEGPVR
Sbjct: 197 PPPPVLNLTPVDHEGPVR 212

[Close]

BLAST of Carg11683 vs. NCBI nr
Match: XP_023532075.1 (RING-H2 finger protein ATL78-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 380.2 bits (975), Expect = 1.1e-101
Identity = 188/197 (95.43%), Postives = 188/197 (95.43%), Query Frame = 0


Query: 4   SRKLFTAAAPSALHNPLQSISGGGGGPDTSFDTNVVMVLSVLLCALICSLGLNSIIRCAF 63
           SRKLFTAAAPSALHNPLQSIS GGGGPDTSFDTNVVMVLSVLLCALICSLGLNSIIRCAF
Sbjct: 17  SRKLFTAAAPSALHNPLQSISVGGGGPDTSFDTNVVMVLSVLLCALICSLGLNSIIRCAF 76

Query: 64  KCSRIVVSHDHRPPTTTTTPPTGVHKKAIKSFTVVQFSPELNFPGMDSECIICLSDFAAG 123
           KCSRIVVSHDHRPPTTTT  PTGVHKKAIKSFTVVQFSPELNFPGMDSECIICLSDFAAG
Sbjct: 77  KCSRIVVSHDHRPPTTTTAAPTGVHKKAIKSFTVVQFSPELNFPGMDSECIICLSDFAAG 136

Query: 124 DKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKIAGVGSSTSTSGQPPSQPP 183
           DKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKIA VGSSTSTSG    QPP
Sbjct: 137 DKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKIADVGSSTSTSG----QPP 196

Query: 184 PPVLNLTPVDHEGPVRI 201
           PPVLNLTPVDHE PVRI
Sbjct: 197 PPVLNLTPVDHEDPVRI 209

[Close]

BLAST of Carg11683 vs. ExPASy Swiss-Prot
Match: Q6NQG7 (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 7.9e-50
Identity = 98/172 (56.98%), Postives = 125/172 (72.67%), Query Frame = 0


Query: 31  DTSFDTNVVMVLSVLLCALICSLGLNSIIRCAFKCSRIVVSH---DHRPPTTTTTPPTGV 90
           D +FD NVVMVLSVLLCAL+CSLGLNSIIRCA +CS +V S    D+ P   T    TGV
Sbjct: 49  DNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVPSEAGGDNYPVRLTN---TGV 108

Query: 91  HKKAIKSFTVVQFSPELNFPGMDSECIICLSDFAAGDKLRLLPKCNHGFHVRCIDKWLTS 150
            +KA+KSF  V +S ELN PG+D+EC ICLS+F A ++++LLP C+HGFHVRCIDKWL+S
Sbjct: 109 KRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDKWLSS 168

Query: 151 HSSCPKCRQCLVQTCQKIAGVGSSTSTSGQPPSQPPPPVLNLTPVDHEGPVR 200
           HSSCP CR CL+QTC+KIA    ++S +   P Q    +L + P++ E  +R
Sbjct: 169 HSSCPTCRHCLIQTCEKIADCSQTSSLNSTQPPQ-DSIILQIAPLEPERWIR 216

[Close]

BLAST of Carg11683 vs. ExPASy Swiss-Prot
Match: P0C034 (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 9.3e-43
Identity = 87/174 (50.00%), Postives = 116/174 (66.67%), Query Frame = 0


Query: 10  AAAPSALHNPLQSISGGGGGPDTSFDTNVVMVLSVLLCALICSLGLNSIIRCAFKCSRIV 69
           A APS L     ++SG           NV+M+LS+L+C +IC LGL+ IIRCA + S   
Sbjct: 41  AVAPSPLITHENNLSG-----------NVMMLLSILICGIICCLGLHYIIRCALRRSTRF 100

Query: 70  VSHDHRPPTTTT--TPPTGVHKKAIKSFTVVQFSPELNFPGMDSECIICLSDFAAGDKLR 129
           +  +  P  ++T  +   G+ KKA++ F VV +SPE+N PG+D EC+ICLSDF +G++LR
Sbjct: 101 MISEPVPSLSSTRGSSNKGIKKKALRMFPVVSYSPEMNLPGLDEECVICLSDFVSGEQLR 160

Query: 130 LLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKIAGVGSSTSTSGQPPSQ 182
           LLPKCNHGFHVRCIDKWL  H +CPKCR CLV+TCQKI G  S   +    P++
Sbjct: 161 LLPKCNHGFHVRCIDKWLQQHLTCPKCRNCLVETCQKILGDFSQADSVTAEPTE 203

[Close]

BLAST of Carg11683 vs. ExPASy Swiss-Prot
Match: Q6NML0 (E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana OX=3702 GN=ATL76 PE=1 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 9.3e-43
Identity = 93/194 (47.94%), Postives = 127/194 (65.46%), Query Frame = 0


Query: 10  AAAPSALHNPLQSISGGGGGPDTSFDTNVVMVLSVLLCALICSLGLNSIIRCAF-KCSRI 69
           A APS L     ++ G           NV+M+LSVL+C +IC LGL+ IIRCAF + SR 
Sbjct: 41  AVAPSPLITHENNLKG-----------NVLMLLSVLICGIICCLGLHYIIRCAFRRSSRF 100

Query: 70  VVSHDHRPPTTTTTPPT----GVHKKAIKSFTVVQFSPELNFPGMDSECIICLSDFAAGD 129
           ++S    P ++ +TP +    G+ KKA++ F VV +S E+N PG+  EC+ICLSDF +G+
Sbjct: 101 MIS---EPISSLSTPRSSSNKGIKKKALRMFPVVSYSREMNLPGIGEECVICLSDFVSGE 160

Query: 130 KLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKIAGVGSSTSTSGQPPSQPPP 189
           +LRLLPKCNHGFHVRCIDKWL  H +CPKCR CLV+TCQKI G  S   +    P++   
Sbjct: 161 QLRLLPKCNHGFHVRCIDKWLQHHLTCPKCRHCLVETCQKILGDFSQADSMASTPTE--S 218

Query: 190 PVLNLTPVDHEGPV 199
            ++ + P++ EG V
Sbjct: 221 VIVRIDPLEPEGRV 218

[Close]

BLAST of Carg11683 vs. ExPASy Swiss-Prot
Match: Q9LS99 (RING-H2 finger protein ATL77 OS=Arabidopsis thaliana OX=3702 GN=ATL77 PE=2 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.5e-42
Identity = 81/134 (60.45%), Postives = 101/134 (75.37%), Query Frame = 0


Query: 37  NVVMVLSVLLCALICSLGLNSIIRCAFKCSRIVVSHDHRPPTTTTTP-----PTGVHKKA 96
           NV+M+LS+LLC +ICSLGL+ IIRCAF  SR  +  D  P +  +TP       G+ KKA
Sbjct: 51  NVLMLLSILLCGIICSLGLHYIIRCAFIRSRSFMISD--PISIPSTPRDSSVNKGIKKKA 110

Query: 97  IKSFTVVQFSPELNFPGMDSECIICLSDFAAGDKLRLLPKCNHGFHVRCIDKWLTSHSSC 156
           +K   VV +SPE+N PG+  EC+ICLSDF AG++LR+LPKCNHGFH+RCIDKWLT H +C
Sbjct: 111 LKMLPVVNYSPEINLPGVGEECVICLSDFVAGEQLRVLPKCNHGFHLRCIDKWLTQHMTC 170

Query: 157 PKCRQCLVQTCQKI 166
           PKCR CLV TCQK+
Sbjct: 171 PKCRHCLVDTCQKV 182

[Close]

BLAST of Carg11683 vs. ExPASy Swiss-Prot
Match: Q94BY6 (RING-H2 finger protein ATL75 OS=Arabidopsis thaliana OX=3702 GN=ATL75 PE=2 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 4.6e-42
Identity = 92/196 (46.94%), Postives = 125/196 (63.78%), Query Frame = 0


Query: 10  AAAPSALHNPLQSISGGGGGPDTSFDTNVVMVLSVLLCALICSLGLNSIIRCAF-KCSRI 69
           A APS L     ++SG           NV+M+LSVL+C +IC LGL+ IIRCAF + S  
Sbjct: 42  AVAPSPLITHENNLSG-----------NVLMLLSVLICGIICCLGLHYIIRCAFRRTSSF 101

Query: 70  VVSHDHRPPTTTTTP----PTGVHKKAIKSFTVVQFSPELNFPGMDSECIICLSDFAAGD 129
           ++S    P    +TP      G++KKA++ F VV +SPE+N PG+  EC+ICLSDF +G+
Sbjct: 102 MIS---EPIAGLSTPCGSSNKGINKKALRMFPVVSYSPEMNLPGLGEECVICLSDFVSGE 161

Query: 130 KLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKIAGVGSSTSTSGQPPSQPPP 189
           ++R+LPKC+HGFHVRCIDKWL  H +CPKCR CLV+TCQKI G  S        P+    
Sbjct: 162 QIRMLPKCHHGFHVRCIDKWLQQHLTCPKCRHCLVETCQKILGDFSQADQVAATPT--AS 221

Query: 190 PVLNLTPVDHEGPVRI 201
            ++ + P++ EG V I
Sbjct: 222 VIVRIAPLEPEGRVNI 221

[Close]

BLAST of Carg11683 vs. ExPASy TrEMBL
Match: A0A6J1G7G9 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111451453 PE=3 SV=1)

HSP 1 Score: 388.3 bits (996), Expect = 2.0e-104
Identity = 191/200 (95.50%), Postives = 192/200 (96.00%), Query Frame = 0


Query: 1   MSISRKLFTAAAPSALHNPLQSISGGGGGPDTSFDTNVVMVLSVLLCALICSLGLNSIIR 60
           MSISRKLFTAAAPSALHNPLQSISGGG GPDTSFDTNVVMVLSVLLCALICSLGLNSIIR
Sbjct: 1   MSISRKLFTAAAPSALHNPLQSISGGGSGPDTSFDTNVVMVLSVLLCALICSLGLNSIIR 60

Query: 61  CAFKCSRIVVSHDHRPPTTTTTPPTGVHKKAIKSFTVVQFSPELNFPGMDSECIICLSDF 120
           CAFKCSRIVVSHDHRP  TTT PPTGVHKKAIKSFTVVQFSPELNFPGMDSECIICLSDF
Sbjct: 61  CAFKCSRIVVSHDHRPLPTTTAPPTGVHKKAIKSFTVVQFSPELNFPGMDSECIICLSDF 120

Query: 121 AAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKIAGVGSSTSTSGQPPS 180
           AAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKIAGVGSSTSTSG    
Sbjct: 121 AAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKIAGVGSSTSTSG---- 180

Query: 181 QPPPPVLNLTPVDHEGPVRI 201
           QPPPP+LNLTPVDHEGPVRI
Sbjct: 181 QPPPPILNLTPVDHEGPVRI 196

[Close]

BLAST of Carg11683 vs. ExPASy TrEMBL
Match: A0A6J1L4E9 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111499787 PE=3 SV=1)

HSP 1 Score: 381.7 bits (979), Expect = 1.9e-102
Identity = 189/198 (95.45%), Postives = 191/198 (96.46%), Query Frame = 0


Query: 4   SRKLFTAAAPSALHNPLQSISGGGGGPDTSFDTNVVMVLSVLLCALICSLGLNSIIRCAF 63
           SRKLFTAAAPSALHNPLQSIS  GGGPDTSFDTNVVMVLSVLLCALICSLGLNSIIRCAF
Sbjct: 17  SRKLFTAAAPSALHNPLQSIS--GGGPDTSFDTNVVMVLSVLLCALICSLGLNSIIRCAF 76

Query: 64  KCSRIVVSHDHRPPTTTTTPPTGVHKKAIKSFTVVQFSPELNFPGMDSECIICLSDFAAG 123
           KCSRIVVSHDHRPP+ TT  PTGVHKKAIKSFTVVQFSPELNFPGMDSECIICLSDFAAG
Sbjct: 77  KCSRIVVSHDHRPPSATTAVPTGVHKKAIKSFTVVQFSPELNFPGMDSECIICLSDFAAG 136

Query: 124 DKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKIAGVG--SSTSTSGQPPSQ 183
           DKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKIAGVG  +STSTSGQPPSQ
Sbjct: 137 DKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKIAGVGTSTSTSTSGQPPSQ 196

Query: 184 PPPPVLNLTPVDHEGPVR 200
           PPPPVLNLTPVDHEGPVR
Sbjct: 197 PPPPVLNLTPVDHEGPVR 212

[Close]

BLAST of Carg11683 vs. ExPASy TrEMBL
Match: A0A5A7TCX2 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00810 PE=3 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.6e-72
Identity = 143/206 (69.42%), Postives = 166/206 (80.58%), Query Frame = 0


Query: 2   SISRKLFTAAAPSALHNPLQSISGGGGGPDTSFDTNVVMVLSVLLCALICSLGLNSIIRC 61
           S+ +  FTAAAPSA+H+  +  S   GG  T+FDTNVVMVLSVLLCALICSL LNS+IRC
Sbjct: 26  SLHKLSFTAAAPSAVHDQSEFYS---GGDSTTFDTNVVMVLSVLLCALICSLALNSVIRC 85

Query: 62  AFKCSRIVVSHDHRPPTTTTTPPTGVHKKAIKSFTVVQFSPELNFPGMDSECIICLSDFA 121
           A KCSR +VS+DHR     T+  TGVHKKAIKSFTVVQFSP+LN PG+DSEC+ICLS+F 
Sbjct: 86  ALKCSRFLVSNDHRRHPAPTS--TGVHKKAIKSFTVVQFSPDLNLPGLDSECVICLSEFV 145

Query: 122 AGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKIAGV---GSSTSTSGQP 181
            GDKLRLLPKCNHGFHV+CIDKWL+SHSSCPKCRQCLVQTC+KIAGV    S++S+SG  
Sbjct: 146 TGDKLRLLPKCNHGFHVKCIDKWLSSHSSCPKCRQCLVQTCEKIAGVIASASASSSSGHS 205

Query: 182 PSQPPPP-----VLNLTPVDHEGPVR 200
           PS PPPP     V+NL P++ E PVR
Sbjct: 206 PSPPPPPPPPSVVVNLAPLEPEAPVR 226

[Close]

BLAST of Carg11683 vs. ExPASy TrEMBL
Match: A0A1S3CDJ3 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103499651 PE=3 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.6e-72
Identity = 143/206 (69.42%), Postives = 166/206 (80.58%), Query Frame = 0


Query: 2   SISRKLFTAAAPSALHNPLQSISGGGGGPDTSFDTNVVMVLSVLLCALICSLGLNSIIRC 61
           S+ +  FTAAAPSA+H+  +  S   GG  T+FDTNVVMVLSVLLCALICSL LNS+IRC
Sbjct: 26  SLHKLSFTAAAPSAVHDQSEFYS---GGDSTTFDTNVVMVLSVLLCALICSLALNSVIRC 85

Query: 62  AFKCSRIVVSHDHRPPTTTTTPPTGVHKKAIKSFTVVQFSPELNFPGMDSECIICLSDFA 121
           A KCSR +VS+DHR     T+  TGVHKKAIKSFTVVQFSP+LN PG+DSEC+ICLS+F 
Sbjct: 86  ALKCSRFLVSNDHRRHPAPTS--TGVHKKAIKSFTVVQFSPDLNLPGLDSECVICLSEFV 145

Query: 122 AGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKIAGV---GSSTSTSGQP 181
            GDKLRLLPKCNHGFHV+CIDKWL+SHSSCPKCRQCLVQTC+KIAGV    S++S+SG  
Sbjct: 146 TGDKLRLLPKCNHGFHVKCIDKWLSSHSSCPKCRQCLVQTCEKIAGVIASASASSSSGHS 205

Query: 182 PSQPPPP-----VLNLTPVDHEGPVR 200
           PS PPPP     V+NL P++ E PVR
Sbjct: 206 PSPPPPPPPPSVVVNLAPLEPEAPVR 226

[Close]

BLAST of Carg11683 vs. ExPASy TrEMBL
Match: A0A0A0LQ73 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_2G301540 PE=3 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 5.5e-70
Identity = 140/198 (70.71%), Postives = 162/198 (81.82%), Query Frame = 0


Query: 9   TAAAPSALHNPLQSISGGGGGPDTSFDTNVVMVLSVLLCALICSLGLNSIIRCAFKCSRI 68
           +AA PSA+H+  +  S   GG  T+FDTNVVMVLSVLLCALICSL LNSIIRCA KCSR+
Sbjct: 40  SAAPPSAVHDQSEFYS---GGDSTTFDTNVVMVLSVLLCALICSLALNSIIRCALKCSRL 99

Query: 69  VVSHDHRPPTTTTTPPTGVHKKAIKSFTVVQFSPELNFPGMDSECIICLSDFAAGDKLRL 128
           +VS+DHR   T T+  TGVHKKAIKSFTVVQFS +LN PG+D EC+ICLS+FA GDKLRL
Sbjct: 100 IVSNDHRHRLTPTS--TGVHKKAIKSFTVVQFSLDLNLPGLDPECVICLSEFATGDKLRL 159

Query: 129 LPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKIAGVGS-----STSTSGQPPSQPP 188
           LPKCNHGFHV+CIDKWL+SHSSCPKCRQCLVQTC+KIAGV S     S+S+SG  PS PP
Sbjct: 160 LPKCNHGFHVKCIDKWLSSHSSCPKCRQCLVQTCEKIAGVASASASASSSSSGHSPSPPP 219

Query: 189 PP--VLNLTPVDHEGPVR 200
           PP  V++L P++ E PVR
Sbjct: 220 PPSVVVDLAPLEPEAPVR 232

[Close]

BLAST of Carg11683 vs. TAIR 10
Match: AT1G49230.1 (RING/U-box superfamily protein )

HSP 1 Score: 198.4 bits (503), Expect = 5.6e-51
Identity = 98/172 (56.98%), Postives = 125/172 (72.67%), Query Frame = 0


Query: 31  DTSFDTNVVMVLSVLLCALICSLGLNSIIRCAFKCSRIVVSH---DHRPPTTTTTPPTGV 90
           D +FD NVVMVLSVLLCAL+CSLGLNSIIRCA +CS +V S    D+ P   T    TGV
Sbjct: 49  DNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVPSEAGGDNYPVRLTN---TGV 108

Query: 91  HKKAIKSFTVVQFSPELNFPGMDSECIICLSDFAAGDKLRLLPKCNHGFHVRCIDKWLTS 150
            +KA+KSF  V +S ELN PG+D+EC ICLS+F A ++++LLP C+HGFHVRCIDKWL+S
Sbjct: 109 KRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDKWLSS 168

Query: 151 HSSCPKCRQCLVQTCQKIAGVGSSTSTSGQPPSQPPPPVLNLTPVDHEGPVR 200
           HSSCP CR CL+QTC+KIA    ++S +   P Q    +L + P++ E  +R
Sbjct: 169 HSSCPTCRHCLIQTCEKIADCSQTSSLNSTQPPQ-DSIILQIAPLEPERWIR 216

[Close]

BLAST of Carg11683 vs. TAIR 10
Match: AT1G49220.1 (RING/U-box superfamily protein )

HSP 1 Score: 174.9 bits (442), Expect = 6.6e-44
Identity = 87/174 (50.00%), Postives = 116/174 (66.67%), Query Frame = 0


Query: 10  AAAPSALHNPLQSISGGGGGPDTSFDTNVVMVLSVLLCALICSLGLNSIIRCAFKCSRIV 69
           A APS L     ++SG           NV+M+LS+L+C +IC LGL+ IIRCA + S   
Sbjct: 41  AVAPSPLITHENNLSG-----------NVMMLLSILICGIICCLGLHYIIRCALRRSTRF 100

Query: 70  VSHDHRPPTTTT--TPPTGVHKKAIKSFTVVQFSPELNFPGMDSECIICLSDFAAGDKLR 129
           +  +  P  ++T  +   G+ KKA++ F VV +SPE+N PG+D EC+ICLSDF +G++LR
Sbjct: 101 MISEPVPSLSSTRGSSNKGIKKKALRMFPVVSYSPEMNLPGLDEECVICLSDFVSGEQLR 160

Query: 130 LLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKIAGVGSSTSTSGQPPSQ 182
           LLPKCNHGFHVRCIDKWL  H +CPKCR CLV+TCQKI G  S   +    P++
Sbjct: 161 LLPKCNHGFHVRCIDKWLQQHLTCPKCRNCLVETCQKILGDFSQADSVTAEPTE 203

[Close]

BLAST of Carg11683 vs. TAIR 10
Match: AT1G49210.1 (RING/U-box superfamily protein )

HSP 1 Score: 174.9 bits (442), Expect = 6.6e-44
Identity = 93/194 (47.94%), Postives = 127/194 (65.46%), Query Frame = 0


Query: 10  AAAPSALHNPLQSISGGGGGPDTSFDTNVVMVLSVLLCALICSLGLNSIIRCAF-KCSRI 69
           A APS L     ++ G           NV+M+LSVL+C +IC LGL+ IIRCAF + SR 
Sbjct: 41  AVAPSPLITHENNLKG-----------NVLMLLSVLICGIICCLGLHYIIRCAFRRSSRF 100

Query: 70  VVSHDHRPPTTTTTPPT----GVHKKAIKSFTVVQFSPELNFPGMDSECIICLSDFAAGD 129
           ++S    P ++ +TP +    G+ KKA++ F VV +S E+N PG+  EC+ICLSDF +G+
Sbjct: 101 MIS---EPISSLSTPRSSSNKGIKKKALRMFPVVSYSREMNLPGIGEECVICLSDFVSGE 160

Query: 130 KLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKIAGVGSSTSTSGQPPSQPPP 189
           +LRLLPKCNHGFHVRCIDKWL  H +CPKCR CLV+TCQKI G  S   +    P++   
Sbjct: 161 QLRLLPKCNHGFHVRCIDKWLQHHLTCPKCRHCLVETCQKILGDFSQADSMASTPTE--S 218

Query: 190 PVLNLTPVDHEGPV 199
            ++ + P++ EG V
Sbjct: 221 VIVRIDPLEPEGRV 218

[Close]

BLAST of Carg11683 vs. TAIR 10
Match: AT3G18773.1 (RING/U-box superfamily protein )

HSP 1 Score: 172.9 bits (437), Expect = 2.5e-43
Identity = 81/134 (60.45%), Postives = 101/134 (75.37%), Query Frame = 0


Query: 37  NVVMVLSVLLCALICSLGLNSIIRCAFKCSRIVVSHDHRPPTTTTTP-----PTGVHKKA 96
           NV+M+LS+LLC +ICSLGL+ IIRCAF  SR  +  D  P +  +TP       G+ KKA
Sbjct: 51  NVLMLLSILLCGIICSLGLHYIIRCAFIRSRSFMISD--PISIPSTPRDSSVNKGIKKKA 110

Query: 97  IKSFTVVQFSPELNFPGMDSECIICLSDFAAGDKLRLLPKCNHGFHVRCIDKWLTSHSSC 156
           +K   VV +SPE+N PG+  EC+ICLSDF AG++LR+LPKCNHGFH+RCIDKWLT H +C
Sbjct: 111 LKMLPVVNYSPEINLPGVGEECVICLSDFVAGEQLRVLPKCNHGFHLRCIDKWLTQHMTC 170

Query: 157 PKCRQCLVQTCQKI 166
           PKCR CLV TCQK+
Sbjct: 171 PKCRHCLVDTCQKV 182

[Close]

BLAST of Carg11683 vs. TAIR 10
Match: AT1G49200.1 (RING/U-box superfamily protein )

HSP 1 Score: 172.6 bits (436), Expect = 3.3e-43
Identity = 92/196 (46.94%), Postives = 125/196 (63.78%), Query Frame = 0


Query: 10  AAAPSALHNPLQSISGGGGGPDTSFDTNVVMVLSVLLCALICSLGLNSIIRCAF-KCSRI 69
           A APS L     ++SG           NV+M+LSVL+C +IC LGL+ IIRCAF + S  
Sbjct: 42  AVAPSPLITHENNLSG-----------NVLMLLSVLICGIICCLGLHYIIRCAFRRTSSF 101

Query: 70  VVSHDHRPPTTTTTP----PTGVHKKAIKSFTVVQFSPELNFPGMDSECIICLSDFAAGD 129
           ++S    P    +TP      G++KKA++ F VV +SPE+N PG+  EC+ICLSDF +G+
Sbjct: 102 MIS---EPIAGLSTPCGSSNKGINKKALRMFPVVSYSPEMNLPGLGEECVICLSDFVSGE 161

Query: 130 KLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKIAGVGSSTSTSGQPPSQPPP 189
           ++R+LPKC+HGFHVRCIDKWL  H +CPKCR CLV+TCQKI G  S        P+    
Sbjct: 162 QIRMLPKCHHGFHVRCIDKWLQQHLTCPKCRHCLVETCQKILGDFSQADQVAATPT--AS 221

Query: 190 PVLNLTPVDHEGPVRI 201
            ++ + P++ EG V I
Sbjct: 222 VIVRIAPLEPEGRVNI 221

The following BLAST results are available for this feature:

BLAST of Carg11683 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7035265.1	2.0e-111	100.00	RING-H2 finger protein ATL78, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
KAG6605310.1	7.2e-109	99.49	RING-H2 finger protein ATL78, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022947654.1	4.1e-104	95.50	RING-H2 finger protein ATL78-like [Cucurbita moschata]	[more]
XP_023007244.1	3.8e-102	95.45	RING-H2 finger protein ATL78-like [Cucurbita maxima]	[more]
XP_023532075.1	1.1e-101	95.43	RING-H2 finger protein ATL78-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg11683 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NQG7	7.9e-50	56.98	RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1	[more]
P0C034	9.3e-43	50.00	RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1	[more]
Q6NML0	9.3e-43	47.94	E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana OX=3702 GN=ATL76 PE=1 ...	[more]
Q9LS99	3.5e-42	60.45	RING-H2 finger protein ATL77 OS=Arabidopsis thaliana OX=3702 GN=ATL77 PE=2 SV=1	[more]
Q94BY6	4.6e-42	46.94	RING-H2 finger protein ATL75 OS=Arabidopsis thaliana OX=3702 GN=ATL75 PE=2 SV=1	[more]

BLAST of Carg11683 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G7G9	2.0e-104	95.50	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111451453...	[more]
A0A6J1L4E9	1.9e-102	95.45	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111499787 P...	[more]
A0A5A7TCX2	2.6e-72	69.42	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3CDJ3	2.6e-72	69.42	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103499651 PE=3 ...	[more]
A0A0A0LQ73	5.5e-70	70.71	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_2G301540 PE...	[more]

BLAST of Carg11683 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49230.1	5.6e-51	56.98	RING/U-box superfamily protein	[more]
AT1G49220.1	6.6e-44	50.00	RING/U-box superfamily protein	[more]
AT1G49210.1	6.6e-44	47.94	RING/U-box superfamily protein	[more]
AT3G18773.1	2.5e-43	60.45	RING/U-box superfamily protein	[more]
AT1G49200.1	3.3e-43	46.94	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 113..154 e-value: 4.2E-7 score: 39.6
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 112..155 e-value: 9.7E-14 score: 51.5
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 113..155 score: 12.090947
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 72..160 e-value: 3.8E-21 score: 76.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 169..200
None	No IPR available	PANTHER	PTHR46905:SF7	RING-H2 FINGER PROTEIN ATL78	coord: 27..199
None	No IPR available	CDD	cd16486	mRING-H2-C3H2C2D_ZSWM2	coord: 112..155 e-value: 3.7868E-15 score: 64.5553
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 91..160
IPR044602	RING-H2 finger protein ATL10/ATL75-79	PANTHER	PTHR46905	RING-H2 FINGER PROTEIN ATL78	coord: 27..199

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11683-RA	Carg11683-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016740	transferase activity