Carg11647 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg11647
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	transcription factor HEC2-like
Location	Carg_Chr02: 3100912 .. 3101535 (-)
RNA-Seq Expression	Carg11647
Synteny	Carg11647

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGACATCGACATCCTCAAATCGACACTATCACCTTCCAACTCCATCGACATGTCGTCCACAATCCTCCTCAACAACAACAACAGCTCCCACTACCCTCCACTCCCCTTCTTCTCCGACTTCTCATCTCCCTCCTTCCACACCGCACAGCCAGTGCTGCCGAACCAACAGAACCGGCAGAAGCGCGGCGGGGGCGGGGGCGGGGGCGGGGGAATGGCAGCAATGAGAGAGATGATATTCCGAATAGCAGCAATGCAGCCAATACAAATAGACCCAGAGGAGATAAAGGCGCCAAAGCGGCGAAACGTGAGAATCTCGAAGGACCCACAGAGCGTGGCGGCGCGGCAGCGGAGGGAGAGAATCAGCCAGAAGATTAGGATTCTGCAGCGGCTGGTGCCTGGGGGAACTAAGATGGACACGGCGTCGATGCTGGATGAGGCGGTTCATTATGTGAAGTTCTTGAAGAGGCAAGTGCAAACGCTGGAGCAGGCAGGGTTTCACAATGCTAATACTACTAATAATAATAACAACTGTCCTAACCTTAGCTACTCTTCTGCGCTTTTCAAAGCTTGCCAAATGCCCCACGCTCCATCTATGCCTGGCTCTTTGCAAATGCATTGA

mRNA sequence

ATGGACGACATCGACATCCTCAAATCGACACTATCACCTTCCAACTCCATCGACATGTCGTCCACAATCCTCCTCAACAACAACAACAGCTCCCACTACCCTCCACTCCCCTTCTTCTCCGACTTCTCATCTCCCTCCTTCCACACCGCACAGCCAGTGCTGCCGAACCAACAGAACCGGCAGAAGCGCGGCGGGGGCGGGGGCGGGGGCGGGGGAATGGCAGCAATGAGAGAGATGATATTCCGAATAGCAGCAATGCAGCCAATACAAATAGACCCAGAGGAGATAAAGGCGCCAAAGCGGCGAAACGTGAGAATCTCGAAGGACCCACAGAGCGTGGCGGCGCGGCAGCGGAGGGAGAGAATCAGCCAGAAGATTAGGATTCTGCAGCGGCTGGTGCCTGGGGGAACTAAGATGGACACGGCGTCGATGCTGGATGAGGCGGTTCATTATGTGAAGTTCTTGAAGAGGCAAGTGCAAACGCTGGAGCAGGCAGGGTTTCACAATGCTAATACTACTAATAATAATAACAACTGTCCTAACCTTAGCTACTCTTCTGCGCTTTTCAAAGCTTGCCAAATGCCCCACGCTCCATCTATGCCTGGCTCTTTGCAAATGCATTGA

Coding sequence (CDS)

ATGGACGACATCGACATCCTCAAATCGACACTATCACCTTCCAACTCCATCGACATGTCGTCCACAATCCTCCTCAACAACAACAACAGCTCCCACTACCCTCCACTCCCCTTCTTCTCCGACTTCTCATCTCCCTCCTTCCACACCGCACAGCCAGTGCTGCCGAACCAACAGAACCGGCAGAAGCGCGGCGGGGGCGGGGGCGGGGGCGGGGGAATGGCAGCAATGAGAGAGATGATATTCCGAATAGCAGCAATGCAGCCAATACAAATAGACCCAGAGGAGATAAAGGCGCCAAAGCGGCGAAACGTGAGAATCTCGAAGGACCCACAGAGCGTGGCGGCGCGGCAGCGGAGGGAGAGAATCAGCCAGAAGATTAGGATTCTGCAGCGGCTGGTGCCTGGGGGAACTAAGATGGACACGGCGTCGATGCTGGATGAGGCGGTTCATTATGTGAAGTTCTTGAAGAGGCAAGTGCAAACGCTGGAGCAGGCAGGGTTTCACAATGCTAATACTACTAATAATAATAACAACTGTCCTAACCTTAGCTACTCTTCTGCGCTTTTCAAAGCTTGCCAAATGCCCCACGCTCCATCTATGCCTGGCTCTTTGCAAATGCATTGA

Protein sequence

MDDIDILKSTLSPSNSIDMSSTILLNNNNSSHYPPLPFFSDFSSPSFHTAQPVLPNQQNRQKRGGGGGGGGGMAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNANTTNNNNNCPNLSYSSALFKACQMPHAPSMPGSLQMH

Homology

[Close]

BLAST of Carg11647 vs. NCBI nr
Match: KAG7035229.1 (Transcription factor HEC2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 402.9 bits (1034), Expect = 1.7e-108
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0


Query: 1   MDDIDILKSTLSPSNSIDMSSTILLNNNNSSHYPPLPFFSDFSSPSFHTAQPVLPNQQNR 60
           MDDIDILKSTLSPSNSIDMSSTILLNNNNSSHYPPLPFFSDFSSPSFHTAQPVLPNQQNR
Sbjct: 1   MDDIDILKSTLSPSNSIDMSSTILLNNNNSSHYPPLPFFSDFSSPSFHTAQPVLPNQQNR 60

Query: 61  QKRGGGGGGGGGMAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQRRE 120
           QKRGGGGGGGGGMAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQRRE
Sbjct: 61  QKRGGGGGGGGGMAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQRRE 120

Query: 121 RISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNANTTNNNNNCP 180
           RISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNANTTNNNNNCP
Sbjct: 121 RISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNANTTNNNNNCP 180

Query: 181 NLSYSSALFKACQMPHAPSMPGSLQMH 208
           NLSYSSALFKACQMPHAPSMPGSLQMH
Sbjct: 181 NLSYSSALFKACQMPHAPSMPGSLQMH 207

[Close]

BLAST of Carg11647 vs. NCBI nr
Match: XP_022947833.1 (transcription factor HEC2-like [Cucurbita moschata])

HSP 1 Score: 397.1 bits (1019), Expect = 9.1e-107
Identity = 207/211 (98.10%), Postives = 207/211 (98.10%), Query Frame = 0


Query: 1   MDDIDILKSTLSPSNSIDMSSTILLNNNNSSHYPPLPFFSDFSSPSFHTAQPVLPNQQNR 60
           MDDIDILKSTLSPSNSIDMSSTILLNNNNSSHYPPLPFFSDFSSPSFHTAQPVLPNQQNR
Sbjct: 1   MDDIDILKSTLSPSNSIDMSSTILLNNNNSSHYPPLPFFSDFSSPSFHTAQPVLPNQQNR 60

Query: 61  QKR----GGGGGGGGGMAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAAR 120
           QKR    GGGGGGGGGMAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAAR
Sbjct: 61  QKRGGGGGGGGGGGGGMAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAAR 120

Query: 121 QRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNANTTNNN 180
           QRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNANTTNNN
Sbjct: 121 QRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNANTTNNN 180

Query: 181 NNCPNLSYSSALFKACQMPHAPSMPGSLQMH 208
           NNCPNLSYSSALFKACQMPHAPSMPGSLQMH
Sbjct: 181 NNCPNLSYSSALFKACQMPHAPSMPGSLQMH 211

[Close]

BLAST of Carg11647 vs. NCBI nr
Match: KAG6605270.1 (Transcription factor HEC2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 384.8 bits (987), Expect = 4.7e-103
Identity = 203/209 (97.13%), Postives = 203/209 (97.13%), Query Frame = 0


Query: 1   MDDIDILKSTLSPSNSIDMSSTILLNNNNSSHYPPLPFFSDFSSPSFHTAQPVLPNQQNR 60
           MDDIDILKSTLSP   IDMSSTILLNNNNSSHY PLPFFSDFSSPSFHTAQPVLPNQQNR
Sbjct: 1   MDDIDILKSTLSP---IDMSSTILLNNNNSSHYSPLPFFSDFSSPSFHTAQPVLPNQQNR 60

Query: 61  QKR--GGGGGGGGGMAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQR 120
           QKR  GGGGGGGGGMAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQR
Sbjct: 61  QKRGCGGGGGGGGGMAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQR 120

Query: 121 RERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNANTTNNNNN 180
           RERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNANTTNNNNN
Sbjct: 121 RERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNANTTNNNNN 180

Query: 181 CPNLSYSSALFKACQMPHAPSMPGSLQMH 208
           CPNLSYSSALFKACQMPHAPSMPGSLQMH
Sbjct: 181 CPNLSYSSALFKACQMPHAPSMPGSLQMH 206

[Close]

BLAST of Carg11647 vs. NCBI nr
Match: XP_023007391.1 (transcription factor HEC2-like [Cucurbita maxima])

HSP 1 Score: 352.8 bits (904), Expect = 2.0e-93
Identity = 190/207 (91.79%), Postives = 191/207 (92.27%), Query Frame = 0


Query: 1   MDDIDILKSTLSPSNSIDMSSTILLNNNNSSHYPPLPFFSDFSSPSFHTAQPVLPNQQNR 60
           MDDIDILKSTLSPSNSIDMSSTILLNNNN  HY PLPFFSDFSS SFHT QP LPN  +R
Sbjct: 1   MDDIDILKSTLSPSNSIDMSSTILLNNNN-PHYSPLPFFSDFSSLSFHTEQPALPNHHHR 60

Query: 61  QKRGGGGGGGGGMAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQRRE 120
           QKR   GGGGGGMAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAAR RRE
Sbjct: 61  QKR---GGGGGGMAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARHRRE 120

Query: 121 RISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNANTTNNNNNCP 180
           RISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHN   T NNNNCP
Sbjct: 121 RISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHN---TTNNNNCP 180

Query: 181 NLSYSSALFKACQMPHAPSMPGSLQMH 208
           NLSYSSALFKACQMPHAPSMPGSLQMH
Sbjct: 181 NLSYSSALFKACQMPHAPSMPGSLQMH 200

[Close]

BLAST of Carg11647 vs. NCBI nr
Match: XP_023534771.1 (transcription factor HEC1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 333.6 bits (854), Expect = 1.2e-87
Identity = 177/192 (92.19%), Postives = 181/192 (94.27%), Query Frame = 0


Query: 19  MSSTILLNNNNSS-HYPPLPFFSDFSSPSFHTAQPVLPN--QQNRQKRGGGGGGGGGMAA 78
           MSSTILLNNNN++ HYPPLPFFSDFSSPSFHTAQ  LPN   QNRQKRGGGGGGGGGMAA
Sbjct: 1   MSSTILLNNNNNNLHYPPLPFFSDFSSPSFHTAQAALPNHHHQNRQKRGGGGGGGGGMAA 60

Query: 79  MREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQRRERISQKIRILQRLVPG 138
           MREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQRRERISQKIRILQRLVPG
Sbjct: 61  MREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQRRERISQKIRILQRLVPG 120

Query: 139 GTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNANTTNNNNNCPNLSYSSALFKACQMP 198
           GTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHN   T N+NNCPNL+YSSALFKACQMP
Sbjct: 121 GTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHN---TTNSNNCPNLTYSSALFKACQMP 180

Query: 199 HAPSMPGSLQMH 208
           HAPSM GSLQMH
Sbjct: 181 HAPSMSGSLQMH 189

[Close]

BLAST of Carg11647 vs. ExPASy Swiss-Prot
Match: Q9FHA7 (Transcription factor HEC1 OS=Arabidopsis thaliana OX=3702 GN=HEC1 PE=1 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 2.1e-37
Identity = 92/152 (60.53%), Postives = 104/152 (68.42%), Query Frame = 0


Query: 29  NSSHYPPLPFFSDFS---SPSFHTAQPVLPNQQ-------------NRQKRGGGGGGGGG 88
           NS+HY      SD S    P F     +L N               +++        G  
Sbjct: 40  NSTHYQ-----SDHSMTNEPGFRYGSGLLTNPSSISPNTAYSSVFLDKRNNSNNNNNGTN 99

Query: 89  MAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQRRERISQKIRILQRL 148
           MAAMREMIFRIA MQPI IDPE +K PKRRNVRISKDPQSVAAR RRERIS++IRILQRL
Sbjct: 100 MAAMREMIFRIAVMQPIHIDPEAVKPPKRRNVRISKDPQSVAARHRRERISERIRILQRL 159

Query: 149 VPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQ 165
           VPGGTKMDTASMLDEA+HYVKFLK+QVQ+LE+
Sbjct: 160 VPGGTKMDTASMLDEAIHYVKFLKKQVQSLEE 186

[Close]

BLAST of Carg11647 vs. ExPASy Swiss-Prot
Match: Q9SND4 (Transcription factor HEC2 OS=Arabidopsis thaliana OX=3702 GN=HEC2 PE=1 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 7.9e-37
Identity = 95/173 (54.91%), Postives = 115/173 (66.47%), Query Frame = 0


Query: 1   MDDIDILKSTLSPSNSIDMSSTILLNNNNSSH-------YPPLPFFSDF--SSPSFHTAQ 60
           M  ++ L    S SN       I++ + +++H       +  LPF        P  +   
Sbjct: 12  MQQMEKLPEHFSNSNPNPNPHNIMMLSESNTHPFFFNPTHSHLPFDQTMPHHQPGLNFRY 71

Query: 61  PVLPNQQNRQKRGGGGGGGGGMAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQ 120
              P+    +KR GG      MAAMREMIFRIA MQPI IDPE +K PKR+NVRISKDPQ
Sbjct: 72  APSPSSSLPEKR-GGCSDNANMAAMREMIFRIAVMQPIHIDPESVKPPKRKNVRISKDPQ 131

Query: 121 SVAARQRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQ 165
           SVAAR RRERIS++IRILQRLVPGGTKMDTASMLDEA+HYVKFLK+QVQ+LE+
Sbjct: 132 SVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLEE 183

[Close]

BLAST of Carg11647 vs. ExPASy Swiss-Prot
Match: Q9LXD8 (Transcription factor HEC3 OS=Arabidopsis thaliana OX=3702 GN=HEC3 PE=1 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 6.5e-31
Identity = 79/139 (56.83%), Postives = 99/139 (71.22%), Query Frame = 0


Query: 24  LLNNNNSSHYPPLPFFSDFSSPSFHTAQPVLPNQQNRQKRGGGGGGGGGMAAMREMIFRI 83
           + N  +SSH+PPL       S S  T   +  +Q++ +           + AM+EM+++I
Sbjct: 53  IFNPFSSSHFPPL-------SSSLTTTTLLSGDQEDDEDE---EEPLEELGAMKEMMYKI 112

Query: 84  AAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQRRERISQKIRILQRLVPGGTKMDTAS 143
           AAMQ + IDP  +K PKRRNVRIS DPQSVAAR RRERIS++IRILQRLVPGGTKMDTAS
Sbjct: 113 AAMQSVDIDPATVKKPKRRNVRISDDPQSVAARHRRERISERIRILQRLVPGGTKMDTAS 172

Query: 144 MLDEAVHYVKFLKRQVQTL 163
           MLDEA+ YVKFLKRQ++ L
Sbjct: 173 MLDEAIRYVKFLKRQIRLL 181

[Close]

BLAST of Carg11647 vs. ExPASy Swiss-Prot
Match: O81313 (Transcription factor IND OS=Arabidopsis thaliana OX=3702 GN=IND PE=1 SV=3)

HSP 1 Score: 124.8 bits (312), Expect = 1.1e-27
Identity = 66/107 (61.68%), Postives = 79/107 (73.83%), Query Frame = 0


Query: 73  MAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQRRERISQKIRILQRL 132
           M AM+EM + IA MQP+ IDP  +  P RRNVRIS DPQ+V AR+RRERIS+KIRIL+R+
Sbjct: 85  MDAMKEMQYMIAVMQPVDIDPATVPKPNRRNVRISDDPQTVVARRRRERISEKIRILKRI 144

Query: 133 VPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNANTTNNNNNC 180
           VPGG KMDTASMLDEA+ Y KFLKRQV+ L+      A   N +  C
Sbjct: 145 VPGGAKMDTASMLDEAIRYTKFLKRQVRILQPHSQIGAPMANPSYLC 191

[Close]

BLAST of Carg11647 vs. ExPASy Swiss-Prot
Match: Q8S3D2 (Transcription factor bHLH87 OS=Arabidopsis thaliana OX=3702 GN=BHLH87 PE=1 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 5.7e-27
Identity = 68/115 (59.13%), Postives = 85/115 (73.91%), Query Frame = 0


Query: 73  MAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQRRERISQKIRILQRL 132
           +A M+EMI+R AA +P+    E ++ PKR+NV+IS DPQ+VAARQRRERIS+KIR+LQ L
Sbjct: 242 IAQMKEMIYRAAAFRPVNFGLEIVEKPKRKNVKISTDPQTVAARQRRERISEKIRVLQTL 301

Query: 133 VPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNANTTNNNNNCPNLSYSSA 188
           VPGGTKMDTASMLDEA +Y+KFL+ QV+ LE        T        NLS+SSA
Sbjct: 302 VPGGTKMDTASMLDEAANYLKFLRAQVKALENLRPKLDQT--------NLSFSSA 348

[Close]

BLAST of Carg11647 vs. ExPASy TrEMBL
Match: A0A6J1G7Q1 (transcription factor HEC2-like OS=Cucurbita moschata OX=3662 GN=LOC111451594 PE=4 SV=1)

HSP 1 Score: 397.1 bits (1019), Expect = 4.4e-107
Identity = 207/211 (98.10%), Postives = 207/211 (98.10%), Query Frame = 0


Query: 1   MDDIDILKSTLSPSNSIDMSSTILLNNNNSSHYPPLPFFSDFSSPSFHTAQPVLPNQQNR 60
           MDDIDILKSTLSPSNSIDMSSTILLNNNNSSHYPPLPFFSDFSSPSFHTAQPVLPNQQNR
Sbjct: 1   MDDIDILKSTLSPSNSIDMSSTILLNNNNSSHYPPLPFFSDFSSPSFHTAQPVLPNQQNR 60

Query: 61  QKR----GGGGGGGGGMAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAAR 120
           QKR    GGGGGGGGGMAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAAR
Sbjct: 61  QKRGGGGGGGGGGGGGMAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAAR 120

Query: 121 QRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNANTTNNN 180
           QRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNANTTNNN
Sbjct: 121 QRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNANTTNNN 180

Query: 181 NNCPNLSYSSALFKACQMPHAPSMPGSLQMH 208
           NNCPNLSYSSALFKACQMPHAPSMPGSLQMH
Sbjct: 181 NNCPNLSYSSALFKACQMPHAPSMPGSLQMH 211

[Close]

BLAST of Carg11647 vs. ExPASy TrEMBL
Match: A0A6J1L0E1 (transcription factor HEC2-like OS=Cucurbita maxima OX=3661 GN=LOC111499900 PE=4 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 9.6e-94
Identity = 190/207 (91.79%), Postives = 191/207 (92.27%), Query Frame = 0


Query: 1   MDDIDILKSTLSPSNSIDMSSTILLNNNNSSHYPPLPFFSDFSSPSFHTAQPVLPNQQNR 60
           MDDIDILKSTLSPSNSIDMSSTILLNNNN  HY PLPFFSDFSS SFHT QP LPN  +R
Sbjct: 1   MDDIDILKSTLSPSNSIDMSSTILLNNNN-PHYSPLPFFSDFSSLSFHTEQPALPNHHHR 60

Query: 61  QKRGGGGGGGGGMAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQRRE 120
           QKR   GGGGGGMAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAAR RRE
Sbjct: 61  QKR---GGGGGGMAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARHRRE 120

Query: 121 RISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNANTTNNNNNCP 180
           RISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHN   T NNNNCP
Sbjct: 121 RISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHN---TTNNNNCP 180

Query: 181 NLSYSSALFKACQMPHAPSMPGSLQMH 208
           NLSYSSALFKACQMPHAPSMPGSLQMH
Sbjct: 181 NLSYSSALFKACQMPHAPSMPGSLQMH 200

[Close]

BLAST of Carg11647 vs. ExPASy TrEMBL
Match: A0A5A7TRN4 (Transcription factor HEC2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G003330 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.9e-62
Identity = 152/220 (69.09%), Postives = 163/220 (74.09%), Query Frame = 0


Query: 1   MDDIDILKSTLSPSNSIDMSSTILLNN-NNSSHYPPLPFFSDFSSPS----FHTAQPVLP 60
           MDDIDILKSTLSPS   DMSST   NN        P P+FSD+S P     F T   ++P
Sbjct: 1   MDDIDILKSTLSPS---DMSSTFFPNNCPQLLPVIPPPYFSDYSPPPGTSLFQTTPTIIP 60

Query: 61  NQQNRQKRGGGGGGGGGMAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAA 120
               RQ+R   G  GGGMAAMREMIFRIAAMQP++IDPE IKAPKRRNVRISKDPQSVAA
Sbjct: 61  EAPARQRR--SGVSGGGMAAMREMIFRIAAMQPVEIDPEAIKAPKRRNVRISKDPQSVAA 120

Query: 121 RQRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNANTTNN 180
           R RRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGF+  N  NN
Sbjct: 121 RHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFNYNNNNNN 180

Query: 181 NN---------NCPNLSYSSALFKACQMPHAPSMPGSLQM 207
           NN         N  NL+Y+SALFKACQ+     MP SLQM
Sbjct: 181 NNNNNNFNNFVNSANLNYASALFKACQI-----MPASLQM 210

[Close]

BLAST of Carg11647 vs. ExPASy TrEMBL
Match: A0A0A0LJI7 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G285890 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 2.5e-62
Identity = 153/223 (68.61%), Postives = 165/223 (73.99%), Query Frame = 0


Query: 1   MDDIDILKSTLSPSNSIDMSSTILLNN---NNSSH----YPPLPFFSDFSSPS----FHT 60
           MDDIDILKSTLS S   DMSST   NN   N + H     PP  +FSD+S P     F T
Sbjct: 1   MDDIDILKSTLSQS---DMSSTFFPNNTAPNCTPHVLPIIPPPAYFSDYSPPPGTSLFQT 60

Query: 61  AQPVLPNQQNRQKRGGGGGGGGGMAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKD 120
              ++P    RQ+R   G  GGGMAAMREMIFRIAAMQP++IDPE IKAPKRRNVRISKD
Sbjct: 61  TPTIIPETPARQRR--SGVSGGGMAAMREMIFRIAAMQPVEIDPEAIKAPKRRNVRISKD 120

Query: 121 PQSVAARQRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHN 180
           PQSVAAR RRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGF+ 
Sbjct: 121 PQSVAARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFNY 180

Query: 181 ANTTNNNN------NCPNLSYSSALFKACQMPHAPSMPGSLQM 207
            N  NNNN      N  NL+Y+SALFKACQ+     MP SLQM
Sbjct: 181 NNNNNNNNNFNNFVNSANLNYASALFKACQI-----MPASLQM 213

[Close]

BLAST of Carg11647 vs. ExPASy TrEMBL
Match: A0A1S4E2F9 (transcription factor HEC2-like OS=Cucumis melo OX=3656 GN=LOC103497414 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 1.2e-51
Identity = 126/170 (74.12%), Postives = 134/170 (78.82%), Query Frame = 0


Query: 1   MDDIDILKSTLSPSNSIDMSSTILLNN-NNSSHYPPLPFFSDFSSPS----FHTAQPVLP 60
           MDDIDILKSTLSPS   DMSST   NN        P P+FSD+S P     F T   ++P
Sbjct: 1   MDDIDILKSTLSPS---DMSSTFFPNNCPQLLPVIPPPYFSDYSPPPGTSLFQTTPTIIP 60

Query: 61  NQQNRQKRGGGGGGGGGMAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAA 120
               RQ+R   G  GGGMAAMREMIFRIAAMQP++IDPE IKAPKRRNVRISKDPQSVAA
Sbjct: 61  EAPARQRR--SGVSGGGMAAMREMIFRIAAMQPVEIDPEAIKAPKRRNVRISKDPQSVAA 120

Query: 121 RQRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQA 166
           R RRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQ+
Sbjct: 121 RHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQS 165

[Close]

BLAST of Carg11647 vs. TAIR 10
Match: AT5G67060.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 157.1 bits (396), Expect = 1.5e-38
Identity = 92/152 (60.53%), Postives = 104/152 (68.42%), Query Frame = 0


Query: 29  NSSHYPPLPFFSDFS---SPSFHTAQPVLPNQQ-------------NRQKRGGGGGGGGG 88
           NS+HY      SD S    P F     +L N               +++        G  
Sbjct: 40  NSTHYQ-----SDHSMTNEPGFRYGSGLLTNPSSISPNTAYSSVFLDKRNNSNNNNNGTN 99

Query: 89  MAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQRRERISQKIRILQRL 148
           MAAMREMIFRIA MQPI IDPE +K PKRRNVRISKDPQSVAAR RRERIS++IRILQRL
Sbjct: 100 MAAMREMIFRIAVMQPIHIDPEAVKPPKRRNVRISKDPQSVAARHRRERISERIRILQRL 159

Query: 149 VPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQ 165
           VPGGTKMDTASMLDEA+HYVKFLK+QVQ+LE+
Sbjct: 160 VPGGTKMDTASMLDEAIHYVKFLKKQVQSLEE 186

[Close]

BLAST of Carg11647 vs. TAIR 10
Match: AT3G50330.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 155.2 bits (391), Expect = 5.6e-38
Identity = 95/173 (54.91%), Postives = 115/173 (66.47%), Query Frame = 0


Query: 1   MDDIDILKSTLSPSNSIDMSSTILLNNNNSSH-------YPPLPFFSDF--SSPSFHTAQ 60
           M  ++ L    S SN       I++ + +++H       +  LPF        P  +   
Sbjct: 12  MQQMEKLPEHFSNSNPNPNPHNIMMLSESNTHPFFFNPTHSHLPFDQTMPHHQPGLNFRY 71

Query: 61  PVLPNQQNRQKRGGGGGGGGGMAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQ 120
              P+    +KR GG      MAAMREMIFRIA MQPI IDPE +K PKR+NVRISKDPQ
Sbjct: 72  APSPSSSLPEKR-GGCSDNANMAAMREMIFRIAVMQPIHIDPESVKPPKRKNVRISKDPQ 131

Query: 121 SVAARQRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQ 165
           SVAAR RRERIS++IRILQRLVPGGTKMDTASMLDEA+HYVKFLK+QVQ+LE+
Sbjct: 132 SVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLEE 183

[Close]

BLAST of Carg11647 vs. TAIR 10
Match: AT5G09750.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 135.6 bits (340), Expect = 4.6e-32
Identity = 79/139 (56.83%), Postives = 99/139 (71.22%), Query Frame = 0


Query: 24  LLNNNNSSHYPPLPFFSDFSSPSFHTAQPVLPNQQNRQKRGGGGGGGGGMAAMREMIFRI 83
           + N  +SSH+PPL       S S  T   +  +Q++ +           + AM+EM+++I
Sbjct: 53  IFNPFSSSHFPPL-------SSSLTTTTLLSGDQEDDEDE---EEPLEELGAMKEMMYKI 112

Query: 84  AAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQRRERISQKIRILQRLVPGGTKMDTAS 143
           AAMQ + IDP  +K PKRRNVRIS DPQSVAAR RRERIS++IRILQRLVPGGTKMDTAS
Sbjct: 113 AAMQSVDIDPATVKKPKRRNVRISDDPQSVAARHRRERISERIRILQRLVPGGTKMDTAS 172

Query: 144 MLDEAVHYVKFLKRQVQTL 163
           MLDEA+ YVKFLKRQ++ L
Sbjct: 173 MLDEAIRYVKFLKRQIRLL 181

[Close]

BLAST of Carg11647 vs. TAIR 10
Match: AT4G00120.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 124.8 bits (312), Expect = 8.1e-29
Identity = 66/107 (61.68%), Postives = 79/107 (73.83%), Query Frame = 0


Query: 73  MAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQRRERISQKIRILQRL 132
           M AM+EM + IA MQP+ IDP  +  P RRNVRIS DPQ+V AR+RRERIS+KIRIL+R+
Sbjct: 85  MDAMKEMQYMIAVMQPVDIDPATVPKPNRRNVRISDDPQTVVARRRRERISEKIRILKRI 144

Query: 133 VPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNANTTNNNNNC 180
           VPGG KMDTASMLDEA+ Y KFLKRQV+ L+      A   N +  C
Sbjct: 145 VPGGAKMDTASMLDEAIRYTKFLKRQVRILQPHSQIGAPMANPSYLC 191

[Close]

BLAST of Carg11647 vs. TAIR 10
Match: AT3G21330.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 122.5 bits (306), Expect = 4.0e-28
Identity = 68/115 (59.13%), Postives = 85/115 (73.91%), Query Frame = 0


Query: 73  MAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQRRERISQKIRILQRL 132
           +A M+EMI+R AA +P+    E ++ PKR+NV+IS DPQ+VAARQRRERIS+KIR+LQ L
Sbjct: 242 IAQMKEMIYRAAAFRPVNFGLEIVEKPKRKNVKISTDPQTVAARQRRERISEKIRVLQTL 301

Query: 133 VPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNANTTNNNNNCPNLSYSSA 188
           VPGGTKMDTASMLDEA +Y+KFL+ QV+ LE        T        NLS+SSA
Sbjct: 302 VPGGTKMDTASMLDEAANYLKFLRAQVKALENLRPKLDQT--------NLSFSSA 348

The following BLAST results are available for this feature:

BLAST of Carg11647 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7035229.1	1.7e-108	100.00	Transcription factor HEC2, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022947833.1	9.1e-107	98.10	transcription factor HEC2-like [Cucurbita moschata]	[more]
KAG6605270.1	4.7e-103	97.13	Transcription factor HEC2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023007391.1	2.0e-93	91.79	transcription factor HEC2-like [Cucurbita maxima]	[more]
XP_023534771.1	1.2e-87	92.19	transcription factor HEC1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg11647 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FHA7	2.1e-37	60.53	Transcription factor HEC1 OS=Arabidopsis thaliana OX=3702 GN=HEC1 PE=1 SV=1	[more]
Q9SND4	7.9e-37	54.91	Transcription factor HEC2 OS=Arabidopsis thaliana OX=3702 GN=HEC2 PE=1 SV=1	[more]
Q9LXD8	6.5e-31	56.83	Transcription factor HEC3 OS=Arabidopsis thaliana OX=3702 GN=HEC3 PE=1 SV=1	[more]
O81313	1.1e-27	61.68	Transcription factor IND OS=Arabidopsis thaliana OX=3702 GN=IND PE=1 SV=3	[more]
Q8S3D2	5.7e-27	59.13	Transcription factor bHLH87 OS=Arabidopsis thaliana OX=3702 GN=BHLH87 PE=1 SV=1	[more]

BLAST of Carg11647 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G7Q1	4.4e-107	98.10	transcription factor HEC2-like OS=Cucurbita moschata OX=3662 GN=LOC111451594 PE=...	[more]
A0A6J1L0E1	9.6e-94	91.79	transcription factor HEC2-like OS=Cucurbita maxima OX=3661 GN=LOC111499900 PE=4 ...	[more]
A0A5A7TRN4	1.9e-62	69.09	Transcription factor HEC2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A0A0LJI7	2.5e-62	68.61	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G285890 PE=4 S...	[more]
A0A1S4E2F9	1.2e-51	74.12	transcription factor HEC2-like OS=Cucumis melo OX=3656 GN=LOC103497414 PE=4 SV=1	[more]

BLAST of Carg11647 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G67060.1	1.5e-38	60.53	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G50330.1	5.6e-38	54.91	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G09750.1	4.6e-32	56.83	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT4G00120.1	8.1e-29	61.68	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G21330.1	4.0e-28	59.13	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 145..165
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..63
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..73
None	No IPR available	PANTHER	PTHR45914:SF29	BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN	coord: 58..196
None	No IPR available	PANTHER	PTHR45914	TRANSCRIPTION FACTOR HEC3-RELATED	coord: 58..196
None	No IPR available	CDD	cd11454	bHLH_AtIND_like	coord: 107..163 e-value: 4.7548E-35 score: 116.723
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 112..161 e-value: 9.8E-14 score: 61.6
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 115..155 e-value: 2.4E-7 score: 30.7
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 106..155 score: 15.281461
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 105..178 e-value: 5.7E-13 score: 50.8
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 110..165

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11647-RA	Carg11647-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity