Carg11606 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg11606
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionTransmembrane protein
LocationCarg_Chr02: 2686214 .. 2688215 (+)
RNA-Seq ExpressionCarg11606
SyntenyCarg11606
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTTTAAGCTCCAAATTTCAGAACCCTACGTCCGAAGAACGAGTAACCCGCGACCCGAAATCGTTCGGAAACAGCGAGCGTATAAGCCCAGATTCGAAGCTCATAAAGAGATTTCTAATTACCAGTTTCGATTCAGAATGCTCGGTCGAAGTAGGTTCCTCTCGTTCCCCATGGTAATTGGCGCTGTTATGTAAGTTCTCTTCCCCAATTTTCATCACTTCCTTTAATCAATCAATTCGAGACTACAATCTGCAGAATCCCAATTTTTTGTTTTTCTTGAAATAGATCCTGATGTTCAATTTGCTATATGAAAATTGATTCACAATTTTATTTTCTTGCCGTTTATCTCCTGAATGAATTGCCTCGTATGGTCTTCTTGATTACGGCACCCGAAATTATAGGACCAGGAAGTAGTTTCTACGATCAGCAGGGGAGATGTCTCTTTGGTTAAATACAATACAACCAAAATGAAAACGCTTCTAAAAGATTTGCTGTAACGGAAGTAGGCAGGATTATCTTTCAGCGTTACCTTGTGGATTTTAGGGGTTTTAGTTTGTTTATCTATCTCCAAATTAATGTTCGATTTGAAAGAACTGAAGCATATTGAAAGGGTTTGAGTTCTTGGTATCAGCCTACCGACCCATAATTTAAGTTACTGAGATGATATTTGGAAGTCAGAACATTCAAAAGTTTCAAGAATTTGAGAAACTTTCTAAATTCTTTCAGCCATTACTAGTTAATGGAGTTCATATAGTTTTTCTCCCCTGTAATTCAAGAACAATGTCTCAGGATCCAAAAATTTGATAATGCAAGTTTATGGAGGCTGGAAAATAAGAAAAATTCTCGTTTCCAAACTTTTATACGAAAATTTTCTGTTTACAATTGACTTACTGTTGTAGCATGAGTTTATGAATCATGGGATTTCTTCTGGGAAAGTTTAGTATAACATTTAAGCTCTCGTTGAGTTTTGGGCTGGAATTTAAACATTGTTTCTGAGTGATAAATTAGTTGAGCATCTGAATAGACTCTGGAATATATGTTGCAGCATTGGTGTTGTCTCTGGGAAAGCAATATTTGGGCCACCTCTTGATGAATACTGGAGAAAGAAGCTGGATGAAGAGGCAAACGCAAAGGATTCAGGTACTACTACTCAAGTTAGCATAGGTCAGGATAGTCATGTTTAGCGACATGAATAGGCAGAGATTGGATAAATATTGTTGCTGAAACAATGGTTAAATGCATAATCTTACATGGATATTTAAGAATGGGTTCGGGACATACAACCTGACTTGAATAGGATCTGCTCTGTAGGTTGCACATTTGTAACTTTGAGTTCTAAGAATTGGGTACCAAAGGTTTTGCAAAGGATGCCTTCTTTTATATGGATTATATGCACACAAAAATGGGAGTTCATGTCATGAGTGATGATTGTCTTTTCATTATCTCTTACTTATGCATCGAAGGTTAGTAAATTGAAGTAAAGCCTGCAAAAACTTTAGAACAAAACAATACATGCAGGCTCTGGCTTCCCATCAAAGATAGAAAAGGGTGGGATTTGGTATCAGGGTGGATAAGGAACGGTTTCATGATACGGAGGATATAGACTGCAATAAGGCTGGATTCTTCCTGCGTTCTTTGAGTTTTTTAAGAGAAGGAAAAAGAAGACGTTAAGAAACTGGGCAGGGAATTTTGAGTTTGACTAGGCATGAAGGTTAAATTATAGATTATTTTTAGGTCTCCGGTCGAGGACGGGAAGGTTTTCCCGCCTTCCCGCCTTGTCGCCATAGATATTCTCATTTTCCCTCATTTTTTTCAATTCTTACATCAATTTTCTTTCTCACCAACCAAACAAGACTCAAATGTTTTTAAGTTAAAATATAAAATTCCCCCTCAAAACTTAATAATAATAAATAAAAAATGGCAAAATAGGAAATGGATCAACCAAGTATTCGTTTCTTACCAATTTGGTAATGCACATATTTTCCTTCTTTTCCCTCC

mRNA sequence

ATGGGTTTTAAGCTCCAAATTTCAGAACCCTACGTCCGAAGAACGAGTAACCCGCGACCCGAAATCGTTCGGAAACAGCGAGCGTATAAGCCCAGATTCGAAGCTCATAAAGAGATTTCTAATTACCAGTTTCGATTCAGAATGCTCGGTCGAAGTAGGTTCCTCTCGTTCCCCATGGTAATTGGCGCTGTTATCATTGGTGTTGTCTCTGGGAAAGCAATATTTGGGCCACCTCTTGATGAATACTGGAGAAAGAAGCTGGATGAAGAGGCAAACGCAAAGGATTCAGGTACTACTACTCAAGTTAGCATAGGTCAGGATAGTCATGTTTAGCGACATGAATAGGCAGAGATTGGATAAATATTGTTGCTGAAACAATGGTTAAATGCATAATCTTACATGGATATTTAAGAATGGGTTCGGGACATACAACCTGACTTGAATAGGATCTGCTCTGTAGGTTGCACATTTGTAACTTTGAGTTCTAAGAATTGGGTACCAAAGGTTTTGCAAAGGATGCCTTCTTTTATATGGATTATATGCACACAAAAATGGGAGTTCATGTCATGAGTGATGATTGTCTTTTCATTATCTCTTACTTATGCATCGAAGGTTAGTAAATTGAAGTAAAGCCTGCAAAAACTTTAGAACAAAACAATACATGCAGGCTCTGGCTTCCCATCAAAGATAGAAAAGGGTGGGATTTGGTATCAGGGTGGATAAGGAACGGTTTCATGATACGGAGGATATAGACTGCAATAAGGCTGGATTCTTCCTGCGTTCTTTGAGTTTTTTAAGAGAAGGAAAAAGAAGACGTTAAGAAACTGGGCAGGGAATTTTGAGTTTGACTAGGCATGAAGGTTAAATTATAGATTATTTTTAGGTCTCCGGTCGAGGACGGGAAGGTTTTCCCGCCTTCCCGCCTTGTCGCCATAGATATTCTCATTTTCCCTCATTTTTTTCAATTCTTACATCAATTTTCTTTCTCACCAACCAAACAAGACTCAAATGTTTTTAAGTTAAAATATAAAATTCCCCCTCAAAACTTAATAATAATAAATAAAAAATGGCAAAATAGGAAATGGATCAACCAAGTATTCGTTTCTTACCAATTTGGTAATGCACATATTTTCCTTCTTTTCCCTCC

Coding sequence (CDS)

ATGGGTTTTAAGCTCCAAATTTCAGAACCCTACGTCCGAAGAACGAGTAACCCGCGACCCGAAATCGTTCGGAAACAGCGAGCGTATAAGCCCAGATTCGAAGCTCATAAAGAGATTTCTAATTACCAGTTTCGATTCAGAATGCTCGGTCGAAGTAGGTTCCTCTCGTTCCCCATGGTAATTGGCGCTGTTATCATTGGTGTTGTCTCTGGGAAAGCAATATTTGGGCCACCTCTTGATGAATACTGGAGAAAGAAGCTGGATGAAGAGGCAAACGCAAAGGATTCAGGTACTACTACTCAAGTTAGCATAGGTCAGGATAGTCATGTTTAG

Protein sequence

MGFKLQISEPYVRRTSNPRPEIVRKQRAYKPRFEAHKEISNYQFRFRMLGRSRFLSFPMVIGAVIIGVVSGKAIFGPPLDEYWRKKLDEEANAKDSGTTTQVSIGQDSHV
Homology
BLAST of Carg11606 vs. NCBI nr
Match: KAG7035190.1 (hypothetical protein SDJN02_01985, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 222.6 bits (566), Expect = 1.6e-54
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0

Query: 1   MGFKLQISEPYVRRTSNPRPEIVRKQRAYKPRFEAHKEISNYQFRFRMLGRSRFLSFPMV 60
           MGFKLQISEPYVRRTSNPRPEIVRKQRAYKPRFEAHKEISNYQFRFRMLGRSRFLSFPMV
Sbjct: 1   MGFKLQISEPYVRRTSNPRPEIVRKQRAYKPRFEAHKEISNYQFRFRMLGRSRFLSFPMV 60

Query: 61  IGAVIIGVVSGKAIFGPPLDEYWRKKLDEEANAKDSGTTTQVSIGQDSHV 111
           IGAVIIGVVSGKAIFGPPLDEYWRKKLDEEANAKDSGTTTQVSIGQDSHV
Sbjct: 61  IGAVIIGVVSGKAIFGPPLDEYWRKKLDEEANAKDSGTTTQVSIGQDSHV 110

BLAST of Carg11606 vs. NCBI nr
Match: KAG6605216.1 (Soyasapogenol B glucuronide galactosyltransferase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 192.6 bits (488), Expect = 1.8e-45
Identity = 95/96 (98.96%), Postives = 95/96 (98.96%), Query Frame = 0

Query: 1  MGFKLQISEPYVRRTSNPRPEIVRKQRAYKPRFEAHKEISNYQFRFRMLGRSRFLSFPMV 60
          MGFKLQISEPYVRRTSNPRPEIVRKQRAYKPRFEA KEISNYQFRFRMLGRSRFLSFPMV
Sbjct: 1  MGFKLQISEPYVRRTSNPRPEIVRKQRAYKPRFEARKEISNYQFRFRMLGRSRFLSFPMV 60

Query: 61 IGAVIIGVVSGKAIFGPPLDEYWRKKLDEEANAKDS 97
          IGAVIIGVVSGKAIFGPPLDEYWRKKLDEEANAKDS
Sbjct: 61 IGAVIIGVVSGKAIFGPPLDEYWRKKLDEEANAKDS 96

BLAST of Carg11606 vs. NCBI nr
Match: KAA0045764.1 (hypothetical protein E6C27_scaffold243G002850 [Cucumis melo var. makuwa] >TYJ99518.1 hypothetical protein E5676_scaffold123G00850 [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 3.6e-17
Identity = 47/56 (83.93%), Postives = 53/56 (94.64%), Query Frame = 0

Query: 48  MLGRSRFLSFPMVIGAVIIGVVSGKAIFGPPLDEYWRKKLDEEANAKDSGTTTQVS 104
           MLGRSRFLSFPMV+GAVIIGVVSGKAIFGPPLDEYW+KKL+EEA AK++GT+T  S
Sbjct: 1   MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETGTSTTSS 56

BLAST of Carg11606 vs. NCBI nr
Match: XP_022149438.1 (uncharacterized protein LOC111017867 [Momordica charantia])

HSP 1 Score: 95.9 bits (237), Expect = 2.3e-16
Identity = 45/53 (84.91%), Postives = 50/53 (94.34%), Query Frame = 0

Query: 48  MLGRSRFLSFPMVIGAVIIGVVSGKAIFGPPLDEYWRKKLDEEANAKDSGTTT 101
           M GRSRFLSFPMVIGAVIIGVVSGKAIFGPPLDEYW+KKL+EEA AK +GT++
Sbjct: 1   MFGRSRFLSFPMVIGAVIIGVVSGKAIFGPPLDEYWKKKLEEEATAKKTGTSS 53

BLAST of Carg11606 vs. NCBI nr
Match: PNT26302.1 (hypothetical protein POPTR_007G006700 [Populus trichocarpa])

HSP 1 Score: 90.5 bits (223), Expect = 9.7e-15
Identity = 43/53 (81.13%), Postives = 49/53 (92.45%), Query Frame = 0

Query: 48  MLGRSRFLSFPMVIGAVIIGVVSGKAIFGPPLDEYWRKKLDEEANAKDSGTTT 101
           M  RSRFLSFP+VIGAVIIGVVSGKAIFGPPLDEYW+KKLDEEA AK++ T++
Sbjct: 1   MFFRSRFLSFPLVIGAVIIGVVSGKAIFGPPLDEYWKKKLDEEAAAKETDTSS 53

BLAST of Carg11606 vs. ExPASy TrEMBL
Match: A0A5D3BMY9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G00850 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.7e-17
Identity = 47/56 (83.93%), Postives = 53/56 (94.64%), Query Frame = 0

Query: 48  MLGRSRFLSFPMVIGAVIIGVVSGKAIFGPPLDEYWRKKLDEEANAKDSGTTTQVS 104
           MLGRSRFLSFPMV+GAVIIGVVSGKAIFGPPLDEYW+KKL+EEA AK++GT+T  S
Sbjct: 1   MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETGTSTTSS 56

BLAST of Carg11606 vs. ExPASy TrEMBL
Match: A0A0A0LPX1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G279280 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.7e-17
Identity = 47/56 (83.93%), Postives = 53/56 (94.64%), Query Frame = 0

Query: 48  MLGRSRFLSFPMVIGAVIIGVVSGKAIFGPPLDEYWRKKLDEEANAKDSGTTTQVS 104
           MLGRSRFLSFPMV+GAVIIGVVSGKAIFGPPLDEYW+KKL+EEA AK++GT+T  S
Sbjct: 1   MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETGTSTTSS 56

BLAST of Carg11606 vs. ExPASy TrEMBL
Match: A0A6J1D6S8 (uncharacterized protein LOC111017867 OS=Momordica charantia OX=3673 GN=LOC111017867 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.1e-16
Identity = 45/53 (84.91%), Postives = 50/53 (94.34%), Query Frame = 0

Query: 48  MLGRSRFLSFPMVIGAVIIGVVSGKAIFGPPLDEYWRKKLDEEANAKDSGTTT 101
           M GRSRFLSFPMVIGAVIIGVVSGKAIFGPPLDEYW+KKL+EEA AK +GT++
Sbjct: 1   MFGRSRFLSFPMVIGAVIIGVVSGKAIFGPPLDEYWKKKLEEEATAKKTGTSS 53

BLAST of Carg11606 vs. ExPASy TrEMBL
Match: U5GB04 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_007G006700 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 4.7e-15
Identity = 43/53 (81.13%), Postives = 49/53 (92.45%), Query Frame = 0

Query: 48  MLGRSRFLSFPMVIGAVIIGVVSGKAIFGPPLDEYWRKKLDEEANAKDSGTTT 101
           M  RSRFLSFP+VIGAVIIGVVSGKAIFGPPLDEYW+KKLDEEA AK++ T++
Sbjct: 1   MFFRSRFLSFPLVIGAVIIGVVSGKAIFGPPLDEYWKKKLDEEAAAKETDTSS 53

BLAST of Carg11606 vs. ExPASy TrEMBL
Match: A0A1R3K3X0 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_11607 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 6.1e-15
Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = 0

Query: 48  MLGRSRFLSFPMVIGAVIIGVVSGKAIFGPPLDEYWRKKLDEEANAKDSGTTT 101
           M  RSRFLSFPMVIGAVIIGV+SGKAIFGPPLDEYWRKKL EEA AK++ T +
Sbjct: 1   MFRRSRFLSFPMVIGAVIIGVISGKAIFGPPLDEYWRKKLQEEAAAKENDTNS 53

BLAST of Carg11606 vs. TAIR 10
Match: AT5G65880.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 74.3 bits (181), Expect = 6.7e-14
Identity = 33/43 (76.74%), Postives = 39/43 (90.70%), Query Frame = 0

Query: 48 MLGRSRFLSFPMVIGAVIIGVVSGKAIFGPPLDEYWRKKLDEE 91
          M  R+RFLS PMVIGAV+IGVVSGKAIFGPPLD+YW++KL+ E
Sbjct: 1  MFRRNRFLSLPMVIGAVVIGVVSGKAIFGPPLDQYWKEKLERE 43

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7035190.11.6e-54100.00hypothetical protein SDJN02_01985, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6605216.11.8e-4598.96Soyasapogenol B glucuronide galactosyltransferase, partial [Cucurbita argyrosper... [more]
KAA0045764.13.6e-1783.93hypothetical protein E6C27_scaffold243G002850 [Cucumis melo var. makuwa] >TYJ995... [more]
XP_022149438.12.3e-1684.91uncharacterized protein LOC111017867 [Momordica charantia][more]
PNT26302.19.7e-1581.13hypothetical protein POPTR_007G006700 [Populus trichocarpa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BMY91.7e-1783.93Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LPX11.7e-1783.93Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G279280 PE=4 SV=1[more]
A0A6J1D6S81.1e-1684.91uncharacterized protein LOC111017867 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
U5GB044.7e-1581.13Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_007G006700 PE=4 ... [more]
A0A1R3K3X06.1e-1581.13Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_11607 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G65880.16.7e-1476.74unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36815BNAC03G48760D PROTEINcoord: 49..100

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg11606-RACarg11606-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane