Carg11606 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGTTTTAAGCTCCAAATTTCAGAACCCTACGTCCGAAGAACGAGTAACCCGCGACCCGAAATCGTTCGGAAACAGCGAGCGTATAAGCCCAGATTCGAAGCTCATAAAGAGATTTCTAATTACCAGTTTCGATTCAGAATGCTCGGTCGAAGTAGGTTCCTCTCGTTCCCCATGGTAATTGGCGCTGTTATGTAAGTTCTCTTCCCCAATTTTCATCACTTCCTTTAATCAATCAATTCGAGACTACAATCTGCAGAATCCCAATTTTTTGTTTTTCTTGAAATAGATCCTGATGTTCAATTTGCTATATGAAAATTGATTCACAATTTTATTTTCTTGCCGTTTATCTCCTGAATGAATTGCCTCGTATGGTCTTCTTGATTACGGCACCCGAAATTATAGGACCAGGAAGTAGTTTCTACGATCAGCAGGGGAGATGTCTCTTTGGTTAAATACAATACAACCAAAATGAAAACGCTTCTAAAAGATTTGCTGTAACGGAAGTAGGCAGGATTATCTTTCAGCGTTACCTTGTGGATTTTAGGGGTTTTAGTTTGTTTATCTATCTCCAAATTAATGTTCGATTTGAAAGAACTGAAGCATATTGAAAGGGTTTGAGTTCTTGGTATCAGCCTACCGACCCATAATTTAAGTTACTGAGATGATATTTGGAAGTCAGAACATTCAAAAGTTTCAAGAATTTGAGAAACTTTCTAAATTCTTTCAGCCATTACTAGTTAATGGAGTTCATATAGTTTTTCTCCCCTGTAATTCAAGAACAATGTCTCAGGATCCAAAAATTTGATAATGCAAGTTTATGGAGGCTGGAAAATAAGAAAAATTCTCGTTTCCAAACTTTTATACGAAAATTTTCTGTTTACAATTGACTTACTGTTGTAGCATGAGTTTATGAATCATGGGATTTCTTCTGGGAAAGTTTAGTATAACATTTAAGCTCTCGTTGAGTTTTGGGCTGGAATTTAAACATTGTTTCTGAGTGATAAATTAGTTGAGCATCTGAATAGACTCTGGAATATATGTTGCAGCATTGGTGTTGTCTCTGGGAAAGCAATATTTGGGCCACCTCTTGATGAATACTGGAGAAAGAAGCTGGATGAAGAGGCAAACGCAAAGGATTCAGGTACTACTACTCAAGTTAGCATAGGTCAGGATAGTCATGTTTAGCGACATGAATAGGCAGAGATTGGATAAATATTGTTGCTGAAACAATGGTTAAATGCATAATCTTACATGGATATTTAAGAATGGGTTCGGGACATACAACCTGACTTGAATAGGATCTGCTCTGTAGGTTGCACATTTGTAACTTTGAGTTCTAAGAATTGGGTACCAAAGGTTTTGCAAAGGATGCCTTCTTTTATATGGATTATATGCACACAAAAATGGGAGTTCATGTCATGAGTGATGATTGTCTTTTCATTATCTCTTACTTATGCATCGAAGGTTAGTAAATTGAAGTAAAGCCTGCAAAAACTTTAGAACAAAACAATACATGCAGGCTCTGGCTTCCCATCAAAGATAGAAAAGGGTGGGATTTGGTATCAGGGTGGATAAGGAACGGTTTCATGATACGGAGGATATAGACTGCAATAAGGCTGGATTCTTCCTGCGTTCTTTGAGTTTTTTAAGAGAAGGAAAAAGAAGACGTTAAGAAACTGGGCAGGGAATTTTGAGTTTGACTAGGCATGAAGGTTAAATTATAGATTATTTTTAGGTCTCCGGTCGAGGACGGGAAGGTTTTCCCGCCTTCCCGCCTTGTCGCCATAGATATTCTCATTTTCCCTCATTTTTTTCAATTCTTACATCAATTTTCTTTCTCACCAACCAAACAAGACTCAAATGTTTTTAAGTTAAAATATAAAATTCCCCCTCAAAACTTAATAATAATAAATAAAAAATGGCAAAATAGGAAATGGATCAACCAAGTATTCGTTTCTTACCAATTTGGTAATGCACATATTTTCCTTCTTTTCCCTCC ATGGGTTTTAAGCTCCAAATTTCAGAACCCTACGTCCGAAGAACGAGTAACCCGCGACCCGAAATCGTTCGGAAACAGCGAGCGTATAAGCCCAGATTCGAAGCTCATAAAGAGATTTCTAATTACCAGTTTCGATTCAGAATGCTCGGTCGAAGTAGGTTCCTCTCGTTCCCCATGGTAATTGGCGCTGTTATCATTGGTGTTGTCTCTGGGAAAGCAATATTTGGGCCACCTCTTGATGAATACTGGAGAAAGAAGCTGGATGAAGAGGCAAACGCAAAGGATTCAGGTACTACTACTCAAGTTAGCATAGGTCAGGATAGTCATGTTTAGCGACATGAATAGGCAGAGATTGGATAAATATTGTTGCTGAAACAATGGTTAAATGCATAATCTTACATGGATATTTAAGAATGGGTTCGGGACATACAACCTGACTTGAATAGGATCTGCTCTGTAGGTTGCACATTTGTAACTTTGAGTTCTAAGAATTGGGTACCAAAGGTTTTGCAAAGGATGCCTTCTTTTATATGGATTATATGCACACAAAAATGGGAGTTCATGTCATGAGTGATGATTGTCTTTTCATTATCTCTTACTTATGCATCGAAGGTTAGTAAATTGAAGTAAAGCCTGCAAAAACTTTAGAACAAAACAATACATGCAGGCTCTGGCTTCCCATCAAAGATAGAAAAGGGTGGGATTTGGTATCAGGGTGGATAAGGAACGGTTTCATGATACGGAGGATATAGACTGCAATAAGGCTGGATTCTTCCTGCGTTCTTTGAGTTTTTTAAGAGAAGGAAAAAGAAGACGTTAAGAAACTGGGCAGGGAATTTTGAGTTTGACTAGGCATGAAGGTTAAATTATAGATTATTTTTAGGTCTCCGGTCGAGGACGGGAAGGTTTTCCCGCCTTCCCGCCTTGTCGCCATAGATATTCTCATTTTCCCTCATTTTTTTCAATTCTTACATCAATTTTCTTTCTCACCAACCAAACAAGACTCAAATGTTTTTAAGTTAAAATATAAAATTCCCCCTCAAAACTTAATAATAATAAATAAAAAATGGCAAAATAGGAAATGGATCAACCAAGTATTCGTTTCTTACCAATTTGGTAATGCACATATTTTCCTTCTTTTCCCTCC ATGGGTTTTAAGCTCCAAATTTCAGAACCCTACGTCCGAAGAACGAGTAACCCGCGACCCGAAATCGTTCGGAAACAGCGAGCGTATAAGCCCAGATTCGAAGCTCATAAAGAGATTTCTAATTACCAGTTTCGATTCAGAATGCTCGGTCGAAGTAGGTTCCTCTCGTTCCCCATGGTAATTGGCGCTGTTATCATTGGTGTTGTCTCTGGGAAAGCAATATTTGGGCCACCTCTTGATGAATACTGGAGAAAGAAGCTGGATGAAGAGGCAAACGCAAAGGATTCAGGTACTACTACTCAAGTTAGCATAGGTCAGGATAGTCATGTTTAG MGFKLQISEPYVRRTSNPRPEIVRKQRAYKPRFEAHKEISNYQFRFRMLGRSRFLSFPMVIGAVIIGVVSGKAIFGPPLDEYWRKKLDEEANAKDSGTTTQVSIGQDSHV Homology
BLAST of Carg11606 vs. NCBI nr
Match: KAG7035190.1 (hypothetical protein SDJN02_01985, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 222.6 bits (566), Expect = 1.6e-54 Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0
BLAST of Carg11606 vs. NCBI nr
Match: KAG6605216.1 (Soyasapogenol B glucuronide galactosyltransferase, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 192.6 bits (488), Expect = 1.8e-45 Identity = 95/96 (98.96%), Postives = 95/96 (98.96%), Query Frame = 0
BLAST of Carg11606 vs. NCBI nr
Match: KAA0045764.1 (hypothetical protein E6C27_scaffold243G002850 [Cucumis melo var. makuwa] >TYJ99518.1 hypothetical protein E5676_scaffold123G00850 [Cucumis melo var. makuwa]) HSP 1 Score: 98.6 bits (244), Expect = 3.6e-17 Identity = 47/56 (83.93%), Postives = 53/56 (94.64%), Query Frame = 0
BLAST of Carg11606 vs. NCBI nr
Match: XP_022149438.1 (uncharacterized protein LOC111017867 [Momordica charantia]) HSP 1 Score: 95.9 bits (237), Expect = 2.3e-16 Identity = 45/53 (84.91%), Postives = 50/53 (94.34%), Query Frame = 0
BLAST of Carg11606 vs. NCBI nr
Match: PNT26302.1 (hypothetical protein POPTR_007G006700 [Populus trichocarpa]) HSP 1 Score: 90.5 bits (223), Expect = 9.7e-15 Identity = 43/53 (81.13%), Postives = 49/53 (92.45%), Query Frame = 0
BLAST of Carg11606 vs. ExPASy TrEMBL
Match: A0A5D3BMY9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G00850 PE=4 SV=1) HSP 1 Score: 98.6 bits (244), Expect = 1.7e-17 Identity = 47/56 (83.93%), Postives = 53/56 (94.64%), Query Frame = 0
BLAST of Carg11606 vs. ExPASy TrEMBL
Match: A0A0A0LPX1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G279280 PE=4 SV=1) HSP 1 Score: 98.6 bits (244), Expect = 1.7e-17 Identity = 47/56 (83.93%), Postives = 53/56 (94.64%), Query Frame = 0
BLAST of Carg11606 vs. ExPASy TrEMBL
Match: A0A6J1D6S8 (uncharacterized protein LOC111017867 OS=Momordica charantia OX=3673 GN=LOC111017867 PE=4 SV=1) HSP 1 Score: 95.9 bits (237), Expect = 1.1e-16 Identity = 45/53 (84.91%), Postives = 50/53 (94.34%), Query Frame = 0
BLAST of Carg11606 vs. ExPASy TrEMBL
Match: U5GB04 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_007G006700 PE=4 SV=1) HSP 1 Score: 90.5 bits (223), Expect = 4.7e-15 Identity = 43/53 (81.13%), Postives = 49/53 (92.45%), Query Frame = 0
BLAST of Carg11606 vs. ExPASy TrEMBL
Match: A0A1R3K3X0 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_11607 PE=4 SV=1) HSP 1 Score: 90.1 bits (222), Expect = 6.1e-15 Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = 0
BLAST of Carg11606 vs. TAIR 10
Match: AT5G65880.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 74.3 bits (181), Expect = 6.7e-14 Identity = 33/43 (76.74%), Postives = 39/43 (90.70%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|