Carg11593 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg11593
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	rRNA-processing protein fcf2-like
Location	Carg_Chr17: 9888331 .. 9890338 (-)
RNA-Seq Expression	Carg11593
Synteny	Carg11593

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGCAGAAAATAGCCTTGTTTGGAAAATCAACTCAGAGCTTGTTAGATGGGCTGTTTGTTCCACCAAACAACCCAAAAAAGTTGAATAATTTACTGAGAAAGCAAGTCAGTGACACGGCTGGGAGGAGCTGGTATATGCTCTTTTCTTGAAATTTCAGCAGTTTTACTATTGATCCTTGAAAGAAACATGGATCCAATTTCATTCGAATGCTGATTAATATGATTTTTAAAATCATTGGTTGTGCCTTGCTAGATACTATCGGCTTACTAACCATAGTACTTGACGTTCTAAATTCTGGTACTTATACGCTTATTATTGTAACTAGGTTTGACATGGCAGCACAAACCATGAGCCCTGAAGTGGAAGAAGACTTGCGCTTGTTGAAGGTGAGACTGTATCCGACGTTTTATCCATTTTACTCTCATCAGTTTTCTATTCCACATATAGCAAACTGGTAACTTTGACCATGTATCAAGAATTGAAATCATGCTAAAGAGCTCTGCAGTTGCGAGATGGGTATATCATGTTAGGAATCACGACTCTCCACAATGGTATGATATTGTCCACTTTGAGCGTAAGCTCTCATGGCTTTGCTTTGGGCTTCCCCAAAAGGCCTCATACCAATGGAGATAGTATTCCCCACTTATAAACCCATGATCTTCCACTAAATTAACCAATGTGGGACACTCCCAATCCCAATAATCCTCAACATATCATGTGTGCGTTCTATAAATATTTGGGTTCCAAACCTTCAAGAATCAATGTTCTTCTAGAGCTATGGCAATGAATATATATATGATTGCTATGATGCATGTAACGACCAATTAGAATGTCATGTTTCTACATATTTGATTTGTTAGGATCATGTAGAGAAATAATAGTACATTTTGATGCCACATGAAACACATATTCCAGTGCACAGTTCATTAGTTCTTGAAACTATACCATGTTGAACCTTTGCATTGTGGTTCTTGAAACTATACCATGTTGAACCTTTGCATTGTGGGACTCTTAAACCTGATATTGGACATTGGAGTGCGTATATTTGACTTATGCATCTATTCCCTCTGAAAAGATCTGTTTGATTGACTTATGCATCTCAATTTCTCTTGATGATTATAGCTGAGGAGTGTCATTGATCCAAAGAGACACTACAAGAAGGGTGACTCAAAATCAAAAACACTTCCCAAATATTTCCAGGCAAGCTTTTACTTTCACAAGTATTTACTAGTTTTAAAGACGGGCAAAAGTATAATTTTAGTGTTAATATTTACTTTTGACTTATGTAATGTTTTAAGTATTCATCAGGTGGGAACTGTGGTTGAGTCCTCTTTGGACTTCTTTTCAGGTAGATTAACAAAGAAGGAAAGGAGAGCAACGCTTGCAGACGAATTGCTATCTGACCAGGCCCTTACTCAGTACAGGTTTGATCTTTGTCATGCCCTCTTTCTGTTGCAAGTTTTTCTAGTTGTGATGAGGATTCCTTAACCAGTTCTTCCATTGATTCGCCCCATAATTTCAATGACTCTTTTGTTTCATGCTAGAGAGTAATAATTCTGGTGCACTTTCAAGCATTTTGTTGTGCTGATGTCCTTTCAAAAACCCCTTGCAGGAAACGCAAAGTACAAGAAATCGAAGAGCAGAATCGATCTGCTGGCAACGATAAGTGGAAAATAAAGGGACGACATTCACGAAAATGGTCTAAGGAAAGGAGGAAGTAGTTAAGGTGGCTCAAAATTTTGACCAGGAAAACCAGATAAACACAGCGGATCAAATGAAGTTAGGTGGGGGGCTGTGTGATACAAAAGTACGTGAATTGATCACGGGTACTTCTGGCTCCAACATAGTTTATGTGCTAGGTGAAGTCCAACAATACTTTTAATGTAACTTTGTACTCTGTAGAGTGGGGTGAACAAGAACGAAAGTTTATCTTTTATGGCTATTGAATTTCTTCCCTGCCAAATTTGATTCCGCATTTCCTTCATTCCGGTATCTGTCTCTGGTTTA

mRNA sequence

AAGCAGAAAATAGCCTTGTTTGGAAAATCAACTCAGAGCTTGTTAGATGGGCTGTTTGTTCCACCAAACAACCCAAAAAAGTTGAATAATTTACTGAGAAAGCAAGTCAGTGACACGGCTGGGAGGAGCTGGTTTGACATGGCAGCACAAACCATGAGCCCTGAAGTGGAAGAAGACTTGCGCTTGTTGAAGCTGAGGAGTGTCATTGATCCAAAGAGACACTACAAGAAGGGTGACTCAAAATCAAAAACACTTCCCAAATATTTCCAGGCAAGCTTTTACTTTCACAAGTATTTACTAGTTTTAAAGACGGGCAAAAGTATAATTTTAGTGTTAATATTTACTTTTGACTTATGTAATGTGGGAACTGTGGTTGAGTCCTCTTTGGACTTCTTTTCAGGTAGATTAACAAAGAAGGAAAGGAGAGCAACGCTTGCAGACGAATTGCTATCTGACCAGGCCCTTACTCAGTACAGGAAACGCAAAGTACAAGAAATCGAAGAGCAGAATCGATCTGCTGGCAACGATAAGTGGAAAATAAAGGGACGACATTCACGAAAATGGTCTAAGGAAAGGAGGAAGTAGTTAAGGTGGCTCAAAATTTTGACCAGGAAAACCAGATAAACACAGCGGATCAAATGAAGTTAGGTGGGGGGCTGTGTGATACAAAAGTACGTGAATTGATCACGGGTACTTCTGGCTCCAACATAGTTTATGTGCTAGGTGAAGTCCAACAATACTTTTAATGTAACTTTGTACTCTGTAGAGTGGGGTGAACAAGAACGAAAGTTTATCTTTTATGGCTATTGAATTTCTTCCCTGCCAAATTTGATTCCGCATTTCCTTCATTCCGGTATCTGTCTCTGGTTTA

Coding sequence (CDS)

AAGCAGAAAATAGCCTTGTTTGGAAAATCAACTCAGAGCTTGTTAGATGGGCTGTTTGTTCCACCAAACAACCCAAAAAAGTTGAATAATTTACTGAGAAAGCAAGTCAGTGACACGGCTGGGAGGAGCTGGTTTGACATGGCAGCACAAACCATGAGCCCTGAAGTGGAAGAAGACTTGCGCTTGTTGAAGCTGAGGAGTGTCATTGATCCAAAGAGACACTACAAGAAGGGTGACTCAAAATCAAAAACACTTCCCAAATATTTCCAGGCAAGCTTTTACTTTCACAAGTATTTACTAGTTTTAAAGACGGGCAAAAGTATAATTTTAGTGTTAATATTTACTTTTGACTTATGTAATGTGGGAACTGTGGTTGAGTCCTCTTTGGACTTCTTTTCAGGTAGATTAACAAAGAAGGAAAGGAGAGCAACGCTTGCAGACGAATTGCTATCTGACCAGGCCCTTACTCAGTACAGGAAACGCAAAGTACAAGAAATCGAAGAGCAGAATCGATCTGCTGGCAACGATAAGTGGAAAATAAAGGGACGACATTCACGAAAATGGTCTAAGGAAAGGAGGAAGTAG

Protein sequence

KQKIALFGKSTQSLLDGLFVPPNNPKKLNNLLRKQVSDTAGRSWFDMAAQTMSPEVEEDLRLLKLRSVIDPKRHYKKGDSKSKTLPKYFQASFYFHKYLLVLKTGKSIILVLIFTFDLCNVGTVVESSLDFFSGRLTKKERRATLADELLSDQALTQYRKRKVQEIEEQNRSAGNDKWKIKGRHSRKWSKERRK

Homology

[Close]

BLAST of Carg11593 vs. NCBI nr
Match: KAG7014649.1 (fcf2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 375.6 bits (963), Expect = 2.7e-100
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0


Query: 1   KQKIALFGKSTQSLLDGLFVPPNNPKKLNNLLRKQVSDTAGRSWFDMAAQTMSPEVEEDL 60
           KQKIALFGKSTQSLLDGLFVPPNNPKKLNNLLRKQVSDTAGRSWFDMAAQTMSPEVEEDL
Sbjct: 1   KQKIALFGKSTQSLLDGLFVPPNNPKKLNNLLRKQVSDTAGRSWFDMAAQTMSPEVEEDL 60

Query: 61  RLLKLRSVIDPKRHYKKGDSKSKTLPKYFQASFYFHKYLLVLKTGKSIILVLIFTFDLCN 120
           RLLKLRSVIDPKRHYKKGDSKSKTLPKYFQASFYFHKYLLVLKTGKSIILVLIFTFDLCN
Sbjct: 61  RLLKLRSVIDPKRHYKKGDSKSKTLPKYFQASFYFHKYLLVLKTGKSIILVLIFTFDLCN 120

Query: 121 VGTVVESSLDFFSGRLTKKERRATLADELLSDQALTQYRKRKVQEIEEQNRSAGNDKWKI 180
           VGTVVESSLDFFSGRLTKKERRATLADELLSDQALTQYRKRKVQEIEEQNRSAGNDKWKI
Sbjct: 121 VGTVVESSLDFFSGRLTKKERRATLADELLSDQALTQYRKRKVQEIEEQNRSAGNDKWKI 180

Query: 181 KGRHSRKWSKERRK 195
           KGRHSRKWSKERRK
Sbjct: 181 KGRHSRKWSKERRK 194

[Close]

BLAST of Carg11593 vs. NCBI nr
Match: KAG6576131.1 (hypothetical protein SDJN03_26770, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 320.5 bits (820), Expect = 1.0e-83
Identity = 170/194 (87.63%), Postives = 172/194 (88.66%), Query Frame = 0


Query: 1   KQKIALFGKSTQSLLDGLFVPPNNPKKLNNLLRKQVSDTAGRSWFDMAAQTMSPEVEEDL 60
           KQKIALFGKSTQSLLDGLFVPPNNPKKLNNLLRKQVSDTAGRSWFDMAAQTMSPEVEEDL
Sbjct: 45  KQKIALFGKSTQSLLDGLFVPPNNPKKLNNLLRKQVSDTAGRSWFDMAAQTMSPEVEEDL 104

Query: 61  RLLKLRSVIDPKRHYKKGDSKSKTLPKYFQASFYFHKYLLVLKTGKSIILVLIFTFDLCN 120
           RLLKLRSVIDPKRHYKKGDSKSKTLPKYFQASFYFH                    ++  
Sbjct: 105 RLLKLRSVIDPKRHYKKGDSKSKTLPKYFQASFYFH--------------------NIHQ 164

Query: 121 VGTVVESSLDFFSGRLTKKERRATLADELLSDQALTQYRKRKVQEIEEQNRSAGNDKWKI 180
           VGTVVESSLDFFSGRLTKKERRATLADELLSDQALTQYRKRKVQEIEEQNRSAGNDKWKI
Sbjct: 165 VGTVVESSLDFFSGRLTKKERRATLADELLSDQALTQYRKRKVQEIEEQNRSAGNDKWKI 218

Query: 181 KGRHSRKWSKERRK 195
           KGRHSRKWSKERRK
Sbjct: 225 KGRHSRKWSKERRK 218

[Close]

BLAST of Carg11593 vs. NCBI nr
Match: XP_023540909.1 (rRNA-processing protein fcf2-like [Cucurbita pepo subsp. pepo] >XP_023540916.1 rRNA-processing protein fcf2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 272.3 bits (695), Expect = 3.2e-69
Identity = 149/190 (78.42%), Postives = 153/190 (80.53%), Query Frame = 0


Query: 5   ALFGKSTQSLLDGLFVPPNNPKKLNNLLRKQVSDTAGRSWFDMAAQTMSPEVEEDLRLLK 64
           +L  K    L+DGLFVPPNNPKKLNNLLRKQVSDTAGRSWFDMAAQTM+PEVEEDLRLLK
Sbjct: 38  SLVWKINSELVDGLFVPPNNPKKLNNLLRKQVSDTAGRSWFDMAAQTMTPEVEEDLRLLK 97

Query: 65  LRSVIDPKRHYKKGDSKSKTLPKYFQASFYFHKYLLVLKTGKSIILVLIFTFDLCNVGTV 124
           LRSVIDPKRHYKKGDSKSKTLPKYFQ                              VGTV
Sbjct: 98  LRSVIDPKRHYKKGDSKSKTLPKYFQ------------------------------VGTV 157

Query: 125 VESSLDFFSGRLTKKERRATLADELLSDQALTQYRKRKVQEIEEQNRSAGNDKWKIKGRH 184
           VESSLDFFSGRLTKKER+ATLADELLSDQALTQYRKRKVQEIEEQNRSAGNDKWKIKGRH
Sbjct: 158 VESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQNRSAGNDKWKIKGRH 197

Query: 185 SRKWSKERRK 195
           SRK SKERRK
Sbjct: 218 SRKRSKERRK 197

[Close]

BLAST of Carg11593 vs. NCBI nr
Match: KAG7025366.1 (fcf2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 267.3 bits (682), Expect = 1.0e-67
Identity = 143/188 (76.06%), Postives = 153/188 (81.38%), Query Frame = 0


Query: 6   LFGKSTQSLLDGLFVPPNNPKKLNNLLRKQVSDTAGRSWFDMAAQTMSPEVEEDLRLLKL 65
           L  K+   L+DGLFVPPNNPKKLN LLRKQVSDTAGRSWFDM AQTM+PE+E+DLRLLKL
Sbjct: 39  LVWKNNSELVDGLFVPPNNPKKLNKLLRKQVSDTAGRSWFDMPAQTMTPEMEKDLRLLKL 98

Query: 66  RSVIDPKRHYKKGDSKSKTLPKYFQASFYFHKYLLVLKTGKSIILVLIFTFDLCNVGTVV 125
           RSVIDPKRHYKKGDSKSKTLPKYFQASFY ++                       VGTVV
Sbjct: 99  RSVIDPKRHYKKGDSKSKTLPKYFQASFYIYQ-----------------------VGTVV 158

Query: 126 ESSLDFFSGRLTKKERRATLADELLSDQALTQYRKRKVQEIEEQNRSAGNDKWKIKGRHS 185
           ESSLDFFSGRLTKKER+ATLADELLSDQALTQYRKRKVQEIEEQNR  GNDKWKI+GR S
Sbjct: 159 ESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQNRPGGNDKWKIRGRQS 203

Query: 186 RKWSKERR 194
           RK +KERR
Sbjct: 219 RKRAKERR 203

[Close]

BLAST of Carg11593 vs. NCBI nr
Match: XP_022954379.1 (rRNA-processing protein fcf2-like [Cucurbita moschata] >XP_022954380.1 rRNA-processing protein fcf2-like [Cucurbita moschata])

HSP 1 Score: 266.5 bits (680), Expect = 1.7e-67
Identity = 147/190 (77.37%), Postives = 152/190 (80.00%), Query Frame = 0


Query: 5   ALFGKSTQSLLDGLFVPPNNPKKLNNLLRKQVSDTAGRSWFDMAAQTMSPEVEEDLRLLK 64
           +L  K    L+DGLFVPPNNPKKLNNLLRKQVSDTAGRSWFDMAAQTM+ EVEEDLRLLK
Sbjct: 38  SLVWKINSELVDGLFVPPNNPKKLNNLLRKQVSDTAGRSWFDMAAQTMTLEVEEDLRLLK 97

Query: 65  LRSVIDPKRHYKKGDSKSKTLPKYFQASFYFHKYLLVLKTGKSIILVLIFTFDLCNVGTV 124
           LRSVIDPKRHYKKGDSKSKTLPKYFQ                              VGTV
Sbjct: 98  LRSVIDPKRHYKKGDSKSKTLPKYFQ------------------------------VGTV 157

Query: 125 VESSLDFFSGRLTKKERRATLADELLSDQALTQYRKRKVQEIEEQNRSAGNDKWKIKGRH 184
           VESSLDFFSGRLTKKERRATLADELLSDQALTQYRKR+VQEIEEQNRSAGNDKWKIKGRH
Sbjct: 158 VESSLDFFSGRLTKKERRATLADELLSDQALTQYRKREVQEIEEQNRSAGNDKWKIKGRH 197

Query: 185 SRKWSKERRK 195
           SRK SK+RRK
Sbjct: 218 SRKRSKKRRK 197

[Close]

BLAST of Carg11593 vs. ExPASy Swiss-Prot
Match: O42877 (rRNA-processing protein fcf2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=fcf2 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.5e-18
Identity = 51/147 (34.69%), Postives = 80/147 (54.42%), Query Frame = 0


Query: 33  RKQVSDTAGRSWFDMAAQTMSPEVEEDLRLLKLRSVIDPKRHYKKGDSKSKTLPKYFQAS 92
           +K + DTAG +WFDM A  ++  V+ D++LLK+R+ +DPKRHY++ ++KS  +PKYFQ  
Sbjct: 104 KKNIKDTAGSNWFDMPATELTESVKRDIQLLKMRNALDPKRHYRRENTKS--MPKYFQ-- 163

Query: 93  FYFHKYLLVLKTGKSIILVLIFTFDLCNVGTVVESSLDFFSGRLTKKERRATLADELLSD 152
                                       VG++VE   DF+S R+  +ER+ T+ DELL D
Sbjct: 164 ----------------------------VGSIVEGPQDFYSSRIPTRERKETIVDELLHD 218

Query: 153 QALTQYRKRKVQEIEEQNRSAGNDKWK 180
                Y K+K  E+++   S    ++K
Sbjct: 224 SERRSYFKKKYLELQKSKMSGRKGQYK 218

[Close]

BLAST of Carg11593 vs. ExPASy Swiss-Prot
Match: Q5QJE6 (Deoxynucleotidyltransferase terminal-interacting protein 2 OS=Homo sapiens OX=9606 GN=DNTTIP2 PE=1 SV=2)

HSP 1 Score: 86.7 bits (213), Expect = 3.2e-16
Identity = 57/165 (34.55%), Postives = 83/165 (50.30%), Query Frame = 0


Query: 20  VPPNNPKK--LNNLLRKQVSDTAGRSWFDMAAQTMSPEVEEDLRLLKLRSVIDPKRHYKK 79
           VPP +  K  L    RK+   TAG  WF M A  M+ E++ DL+ LK+R+ +DPKR YKK
Sbjct: 619 VPPYSESKYQLQKKRRKERQKTAGDGWFGMKAPEMTNELKNDLKALKMRASMDPKRFYKK 678

Query: 80  GDSKSKTLPKYFQASFYFHKYLLVLKTGKSIILVLIFTFDLCNVGTVVESSLDFFSGRLT 139
            D      PKYFQ                              +GT+V++  DF+  R+ 
Sbjct: 679 NDRDG--FPKYFQ------------------------------IGTIVDNPADFYHSRIP 738

Query: 140 KKERRATLADELLSDQALTQYRKRKVQEI-EEQNRSAGNDKWKIK 182
           KK+R+ T+ +ELL+D    +Y +RK  EI  E+  +A   K++ K
Sbjct: 739 KKQRKRTIVEELLADSEFRRYNRRKYSEIMAEKAANAAGKKFRKK 751

[Close]

BLAST of Carg11593 vs. ExPASy Swiss-Prot
Match: Q8R2M2 (Deoxynucleotidyltransferase terminal-interacting protein 2 OS=Mus musculus OX=10090 GN=Dnttip2 PE=1 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.2e-16
Identity = 58/165 (35.15%), Postives = 83/165 (50.30%), Query Frame = 0


Query: 20  VPPNNPKK--LNNLLRKQVSDTAGRSWFDMAAQTMSPEVEEDLRLLKLRSVIDPKRHYKK 79
           VPP +  K  L    RK+   TAG  WF M A  ++ E++ DLR LK+R+ +DPKR YKK
Sbjct: 621 VPPYSESKHRLQKQRRKERQKTAGNGWFGMKAPELTDELKNDLRALKMRAGMDPKRFYKK 680

Query: 80  GDSKSKTLPKYFQASFYFHKYLLVLKTGKSIILVLIFTFDLCNVGTVVESSLDFFSGRLT 139
            D      PKYFQ                              VGT+V++  DF+  R+ 
Sbjct: 681 NDRDG--FPKYFQ------------------------------VGTIVDNPADFYHSRIP 740

Query: 140 KKERRATLADELLSDQALTQYRKRKVQEI-EEQNRSAGNDKWKIK 182
           KK+R+ T+ +ELL+D    ++ +RK  EI  E+  +A   K+K K
Sbjct: 741 KKQRKKTIVEELLADSEFRRFNRRKYSEIMAEKAANAEGKKFKKK 753

[Close]

BLAST of Carg11593 vs. ExPASy Swiss-Prot
Match: Q0P5H2 (Deoxynucleotidyltransferase terminal-interacting protein 2 OS=Bos taurus OX=9913 GN=DNTTIP2 PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.1e-15
Identity = 55/165 (33.33%), Postives = 83/165 (50.30%), Query Frame = 0


Query: 20  VPP--NNPKKLNNLLRKQVSDTAGRSWFDMAAQTMSPEVEEDLRLLKLRSVIDPKRHYKK 79
           VPP   +  KL    R++   TAG  WF M A  ++ E++ DL+ LK+R+ +DPKR YKK
Sbjct: 629 VPPYSESKYKLQKKRRQERQKTAGDGWFGMKAPELTDELKNDLKALKMRASMDPKRFYKK 688

Query: 80  GDSKSKTLPKYFQASFYFHKYLLVLKTGKSIILVLIFTFDLCNVGTVVESSLDFFSGRLT 139
            D      PKYFQ                              +GT+V++  DF+  R+ 
Sbjct: 689 NDRDG--FPKYFQ------------------------------IGTIVDNPADFYHSRVP 748

Query: 140 KKERRATLADELLSDQALTQYRKRKVQEI-EEQNRSAGNDKWKIK 182
           KK+R+ T+ +ELL+D    +Y +RK  EI  E+  +A   K++ K
Sbjct: 749 KKQRKRTIVEELLADSEFRRYNRRKYSEIMAEKAANAAGKKFRKK 761

[Close]

BLAST of Carg11593 vs. ExPASy Swiss-Prot
Match: Q12035 (rRNA-processing protein FCF2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=FCF2 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.0e-09
Identity = 52/182 (28.57%), Postives = 83/182 (45.60%), Query Frame = 0


Query: 24  NPKKLNNLL---------RKQVSDTAGRSWFDMAA--QTMSPEVEEDLRLLKLRSVIDPK 83
           N KK  N+L         +   SD     WF +      M  EV+ DL L+K R+ +DPK
Sbjct: 74  NKKKKKNVLPSVETEDKRKPNKSDKNDNDWFTLPKPDDNMRREVQRDLLLIKHRAALDPK 133

Query: 84  RHYKKGDSKSKTLPKYFQASFYFHKYLLVLKTGKSIILVLIFTFDLCNVGTVVESSLDFF 143
           RHYKK   +   +P+ F                               +GT++E   +F+
Sbjct: 134 RHYKK---QRWEVPERFA------------------------------IGTIIEDKSEFY 193

Query: 144 SGRLTKKERRATLADELLSDQALTQYRKRKVQEIEEQNRSAGNDKWKIKGRHSRKWSKER 195
           S R+ +KER++T+ + L+ D+A  +Y KRK  EI+E++ S        +  H +K  + R
Sbjct: 194 SSRMNRKERKSTILETLMGDEASNKYFKRKYNEIQEKSTSG-------RKAHYKKMKEMR 215

[Close]

BLAST of Carg11593 vs. ExPASy TrEMBL
Match: A0A6J1GSU3 (rRNA-processing protein fcf2-like OS=Cucurbita moschata OX=3662 GN=LOC111456634 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 8.4e-68
Identity = 147/190 (77.37%), Postives = 152/190 (80.00%), Query Frame = 0


Query: 5   ALFGKSTQSLLDGLFVPPNNPKKLNNLLRKQVSDTAGRSWFDMAAQTMSPEVEEDLRLLK 64
           +L  K    L+DGLFVPPNNPKKLNNLLRKQVSDTAGRSWFDMAAQTM+ EVEEDLRLLK
Sbjct: 38  SLVWKINSELVDGLFVPPNNPKKLNNLLRKQVSDTAGRSWFDMAAQTMTLEVEEDLRLLK 97

Query: 65  LRSVIDPKRHYKKGDSKSKTLPKYFQASFYFHKYLLVLKTGKSIILVLIFTFDLCNVGTV 124
           LRSVIDPKRHYKKGDSKSKTLPKYFQ                              VGTV
Sbjct: 98  LRSVIDPKRHYKKGDSKSKTLPKYFQ------------------------------VGTV 157

Query: 125 VESSLDFFSGRLTKKERRATLADELLSDQALTQYRKRKVQEIEEQNRSAGNDKWKIKGRH 184
           VESSLDFFSGRLTKKERRATLADELLSDQALTQYRKR+VQEIEEQNRSAGNDKWKIKGRH
Sbjct: 158 VESSLDFFSGRLTKKERRATLADELLSDQALTQYRKREVQEIEEQNRSAGNDKWKIKGRH 197

Query: 185 SRKWSKERRK 195
           SRK SK+RRK
Sbjct: 218 SRKRSKKRRK 197

[Close]

BLAST of Carg11593 vs. ExPASy TrEMBL
Match: A0A6J1JSD0 (rRNA-processing protein fcf2-like OS=Cucurbita maxima OX=3661 GN=LOC111488480 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.9e-67
Identity = 146/190 (76.84%), Postives = 150/190 (78.95%), Query Frame = 0


Query: 5   ALFGKSTQSLLDGLFVPPNNPKKLNNLLRKQVSDTAGRSWFDMAAQTMSPEVEEDLRLLK 64
           +L  K    L+DGLFVPPNNPKKLNNLLRKQVSDTAGRSW  MAAQTM+PEVEEDLRLLK
Sbjct: 38  SLVWKINSELVDGLFVPPNNPKKLNNLLRKQVSDTAGRSWIGMAAQTMTPEVEEDLRLLK 97

Query: 65  LRSVIDPKRHYKKGDSKSKTLPKYFQASFYFHKYLLVLKTGKSIILVLIFTFDLCNVGTV 124
           LRSVIDPKRHYKKGDSKSKTLPKYFQ                              VGTV
Sbjct: 98  LRSVIDPKRHYKKGDSKSKTLPKYFQ------------------------------VGTV 157

Query: 125 VESSLDFFSGRLTKKERRATLADELLSDQALTQYRKRKVQEIEEQNRSAGNDKWKIKGRH 184
           VE SLDFFSGRLTKKER+ATLADELLSDQALTQYRKRKVQEIEEQNRSAGNDKWKIKGRH
Sbjct: 158 VECSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQNRSAGNDKWKIKGRH 197

Query: 185 SRKWSKERRK 195
           SRK SKERRK
Sbjct: 218 SRKRSKERRK 197

[Close]

BLAST of Carg11593 vs. ExPASy TrEMBL
Match: A0A6J1DMD6 (rRNA-processing protein fcf2 OS=Momordica charantia OX=3673 GN=LOC111022552 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 8.7e-65
Identity = 139/189 (73.54%), Postives = 149/189 (78.84%), Query Frame = 0


Query: 5   ALFGKSTQSLLDGLFVPPNNPKKLNNLLRKQVSDTAGRSWFDMAAQTMSPEVEEDLRLLK 64
           +L  K+   L+DGLFVPPNNPKKLN LLRKQVSDTAGRSWFDM AQTM+PE+E+DLRLLK
Sbjct: 38  SLVWKTNTELVDGLFVPPNNPKKLNKLLRKQVSDTAGRSWFDMPAQTMTPELEKDLRLLK 97

Query: 65  LRSVIDPKRHYKKGDSKSKTLPKYFQASFYFHKYLLVLKTGKSIILVLIFTFDLCNVGTV 124
           LRSVIDPKRHYKKGDSKSKTLPKYFQ                              VGTV
Sbjct: 98  LRSVIDPKRHYKKGDSKSKTLPKYFQ------------------------------VGTV 157

Query: 125 VESSLDFFSGRLTKKERRATLADELLSDQALTQYRKRKVQEIEEQNRSAGNDKWKIKGRH 184
           VESSLDFFSGRLTKKER+ATLADELLSDQALTQYRKRKV+EIEE NR AGNDKWKI+GRH
Sbjct: 158 VESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVREIEELNRPAGNDKWKIRGRH 196

Query: 185 SRKWSKERR 194
           SRK +KERR
Sbjct: 218 SRKRAKERR 196

[Close]

BLAST of Carg11593 vs. ExPASy TrEMBL
Match: A0A6J1H9T2 (rRNA-processing protein fcf2-like OS=Cucurbita moschata OX=3662 GN=LOC111460917 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 3.3e-64
Identity = 138/188 (73.40%), Postives = 147/188 (78.19%), Query Frame = 0


Query: 6   LFGKSTQSLLDGLFVPPNNPKKLNNLLRKQVSDTAGRSWFDMAAQTMSPEVEEDLRLLKL 65
           L  K+   L+DGLFVPPNNPKKLN LLRKQVSDTAGR+WFDM AQTM+PE+E+DLRLLKL
Sbjct: 39  LVWKNNSELVDGLFVPPNNPKKLNKLLRKQVSDTAGRNWFDMPAQTMTPEMEKDLRLLKL 98

Query: 66  RSVIDPKRHYKKGDSKSKTLPKYFQASFYFHKYLLVLKTGKSIILVLIFTFDLCNVGTVV 125
           RSVIDPKRHYKKGDSKSKTLPKYFQ                              VGTVV
Sbjct: 99  RSVIDPKRHYKKGDSKSKTLPKYFQ------------------------------VGTVV 158

Query: 126 ESSLDFFSGRLTKKERRATLADELLSDQALTQYRKRKVQEIEEQNRSAGNDKWKIKGRHS 185
           ESSLDFFSGRLTKKER+ATLADELLSDQALTQYRKRKVQEIEEQNR  GNDKWKI+GR S
Sbjct: 159 ESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQNRPGGNDKWKIRGRQS 196

Query: 186 RKWSKERR 194
           RK +KERR
Sbjct: 219 RKRAKERR 196

[Close]

BLAST of Carg11593 vs. ExPASy TrEMBL
Match: A0A6J1KU17 (rRNA-processing protein fcf2-like OS=Cucurbita maxima OX=3661 GN=LOC111498206 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 4.3e-64
Identity = 138/188 (73.40%), Postives = 147/188 (78.19%), Query Frame = 0


Query: 6   LFGKSTQSLLDGLFVPPNNPKKLNNLLRKQVSDTAGRSWFDMAAQTMSPEVEEDLRLLKL 65
           L  K+   L+DGLFVPPNNPKKLN LLRKQVSDTAGRSWFDM AQTM+PE+E+DLRLLKL
Sbjct: 40  LVWKNNSELVDGLFVPPNNPKKLNKLLRKQVSDTAGRSWFDMPAQTMTPEMEKDLRLLKL 99

Query: 66  RSVIDPKRHYKKGDSKSKTLPKYFQASFYFHKYLLVLKTGKSIILVLIFTFDLCNVGTVV 125
           RSVIDPKRHYKKGDSKSKTLPKYFQ                              VGTVV
Sbjct: 100 RSVIDPKRHYKKGDSKSKTLPKYFQ------------------------------VGTVV 159

Query: 126 ESSLDFFSGRLTKKERRATLADELLSDQALTQYRKRKVQEIEEQNRSAGNDKWKIKGRHS 185
           ESSLDFFSGRLTKKER+ATLADELLSDQALTQYRKRKVQEIEEQNR  GNDKWKI+GR S
Sbjct: 160 ESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQNRPGGNDKWKIRGRQS 197

Query: 186 RKWSKERR 194
           +K +KERR
Sbjct: 220 QKRAKERR 197

[Close]

BLAST of Carg11593 vs. TAIR 10
Match: AT5G30495.2 (Fcf2 pre-rRNA processing protein )

HSP 1 Score: 161.4 bits (407), Expect = 7.4e-40
Identity = 90/184 (48.91%), Postives = 120/184 (65.22%), Query Frame = 0


Query: 10  STQSLLDGLFVPPNNPKKLNNLLRKQVSDTAGRSWFDMAAQTMSPEVEEDLRLLKLRSVI 69
           S   L+DGL +PPN+PKK+N ++RKQ+ DT G +WFDM A TM+PE++ DL+LLKLR+V+
Sbjct: 44  SKSELVDGLCLPPNDPKKINKMIRKQIKDTTGSNWFDMPAPTMTPELKRDLQLLKLRTVM 103

Query: 70  DPKRHYKKGDSKSKTLPKYFQASFYFHKYLLVLKTGKSIILVLIFTFDLCNVGTVVESSL 129
           DP  HYKK  S+SK   KYFQ                              +GTV+E + 
Sbjct: 104 DPAVHYKKSVSRSKLAEKYFQ------------------------------IGTVIEPAE 163

Query: 130 DFFSGRLTKKERRATLADELLSDQALTQYRKRKVQEIEEQNRSAGNDKWKIKGRHSRKWS 189
           +F+ GRLTKK R+ATLADEL+SD  ++QYRKRKV+EIEE++R+  N KWK KG  +    
Sbjct: 164 EFY-GRLTKKNRKATLADELVSDPKVSQYRKRKVKEIEEKSRAVTNKKWKKKGNQTTN-K 195

Query: 190 KERR 194
           K+RR
Sbjct: 224 KQRR 195

[Close]

BLAST of Carg11593 vs. TAIR 10
Match: AT5G30495.1 (Fcf2 pre-rRNA processing protein )

HSP 1 Score: 161.4 bits (407), Expect = 7.4e-40
Identity = 90/184 (48.91%), Postives = 120/184 (65.22%), Query Frame = 0


Query: 10  STQSLLDGLFVPPNNPKKLNNLLRKQVSDTAGRSWFDMAAQTMSPEVEEDLRLLKLRSVI 69
           S   L+DGL +PPN+PKK+N ++RKQ+ DT G +WFDM A TM+PE++ DL+LLKLR+V+
Sbjct: 44  SKSELVDGLCLPPNDPKKINKMIRKQIKDTTGSNWFDMPAPTMTPELKRDLQLLKLRTVM 103

Query: 70  DPKRHYKKGDSKSKTLPKYFQASFYFHKYLLVLKTGKSIILVLIFTFDLCNVGTVVESSL 129
           DP  HYKK  S+SK   KYFQ                              +GTV+E + 
Sbjct: 104 DPAVHYKKSVSRSKLAEKYFQ------------------------------IGTVIEPAE 163

Query: 130 DFFSGRLTKKERRATLADELLSDQALTQYRKRKVQEIEEQNRSAGNDKWKIKGRHSRKWS 189
           +F+ GRLTKK R+ATLADEL+SD  ++QYRKRKV+EIEE++R+  N KWK KG  +    
Sbjct: 164 EFY-GRLTKKNRKATLADELVSDPKVSQYRKRKVKEIEEKSRAVTNKKWKKKGNQTTN-K 195

Query: 190 KERR 194
           K+RR
Sbjct: 224 KQRR 195

[Close]

BLAST of Carg11593 vs. TAIR 10
Match: AT1G54770.1 (Fcf2 pre-rRNA processing protein )

HSP 1 Score: 155.6 bits (392), Expect = 4.0e-38
Identity = 88/184 (47.83%), Postives = 117/184 (63.59%), Query Frame = 0


Query: 10  STQSLLDGLFVPPNNPKKLNNLLRKQVSDTAGRSWFDMAAQTMSPEVEEDLRLLKLRSVI 69
           S   L+DGL +PPN+P+K+N ++RKQ+ DT G +WFDM A TM+PE++ DL+LLKLR+V+
Sbjct: 37  SKSELVDGLCLPPNDPRKINKMIRKQLKDTTGSNWFDMPAPTMTPELKRDLQLLKLRTVM 96

Query: 70  DPKRHYKKGDSKSKTLPKYFQASFYFHKYLLVLKTGKSIILVLIFTFDLCNVGTVVESSL 129
           DP  HYKK  S+SK   KYFQ                              +GTV+E + 
Sbjct: 97  DPALHYKKSVSRSKLAEKYFQ------------------------------IGTVIEPAE 156

Query: 130 DFFSGRLTKKERRATLADELLSDQALTQYRKRKVQEIEEQNRSAGNDKWKIKGRHSRKWS 189
           +F+ GRLTKK R+ATLADEL+SD     YRKRKV+EIEE++R+  N KW  KG  S+  +
Sbjct: 157 EFY-GRLTKKNRKATLADELVSDPKTALYRKRKVREIEEKSRAVTNKKWNKKGNQSKN-T 188

Query: 190 KERR 194
           K RR
Sbjct: 217 KPRR 188

The following BLAST results are available for this feature:

BLAST of Carg11593 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7014649.1	2.7e-100	100.00	fcf2, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6576131.1	1.0e-83	87.63	hypothetical protein SDJN03_26770, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023540909.1	3.2e-69	78.42	rRNA-processing protein fcf2-like [Cucurbita pepo subsp. pepo] >XP_023540916.1 r...	[more]
KAG7025366.1	1.0e-67	76.06	fcf2 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022954379.1	1.7e-67	77.37	rRNA-processing protein fcf2-like [Cucurbita moschata] >XP_022954380.1 rRNA-proc...	[more]

BLAST of Carg11593 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O42877	4.5e-18	34.69	rRNA-processing protein fcf2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
Q5QJE6	3.2e-16	34.55	Deoxynucleotidyltransferase terminal-interacting protein 2 OS=Homo sapiens OX=96...	[more]
Q8R2M2	3.2e-16	35.15	Deoxynucleotidyltransferase terminal-interacting protein 2 OS=Mus musculus OX=10...	[more]
Q0P5H2	2.1e-15	33.33	Deoxynucleotidyltransferase terminal-interacting protein 2 OS=Bos taurus OX=9913...	[more]
Q12035	1.0e-09	28.57	rRNA-processing protein FCF2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S...	[more]

BLAST of Carg11593 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GSU3	8.4e-68	77.37	rRNA-processing protein fcf2-like OS=Cucurbita moschata OX=3662 GN=LOC111456634 ...	[more]
A0A6J1JSD0	1.9e-67	76.84	rRNA-processing protein fcf2-like OS=Cucurbita maxima OX=3661 GN=LOC111488480 PE...	[more]
A0A6J1DMD6	8.7e-65	73.54	rRNA-processing protein fcf2 OS=Momordica charantia OX=3673 GN=LOC111022552 PE=4...	[more]
A0A6J1H9T2	3.3e-64	73.40	rRNA-processing protein fcf2-like OS=Cucurbita moschata OX=3662 GN=LOC111460917 ...	[more]
A0A6J1KU17	4.3e-64	73.40	rRNA-processing protein fcf2-like OS=Cucurbita maxima OX=3661 GN=LOC111498206 PE...	[more]

BLAST of Carg11593 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G30495.2	7.4e-40	48.91	Fcf2 pre-rRNA processing protein	[more]
AT5G30495.1	7.4e-40	48.91	Fcf2 pre-rRNA processing protein	[more]
AT1G54770.1	4.0e-38	47.83	Fcf2 pre-rRNA processing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014810	Fcf2 pre-rRNA processing, C-terminal	PFAM	PF08698	Fcf2	coord: 119..162 e-value: 6.7E-10 score: 39.2 coord: 38..91 e-value: 5.0E-18 score: 65.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 166..194
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 180..194
IPR039883	Fcf2/DNTTIP2	PANTHER	PTHR21686	UNCHARACTERIZED	coord: 5..187

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11593-RA	Carg11593-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006396	RNA processing
cellular_component	GO:0005730	nucleolus