Carg11568 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg11568
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Tify domain-containing protein
Location	Carg_Chr17: 9780096 .. 9780521 (+)
RNA-Seq Expression	Carg11568
Synteny	Carg11568

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCCGACTCTCTCCCTCTCTGTAACTCTCTGTAACGCTATTTTCCTCCAATTCCCTCTTCTTCCTCCTCCTTCATTCTCCCGCCATGGCTAGGGCTACTGTCGAGCTTGATTTCTTCGGCCTCGAGAAGAAGGCCTCCTCCAGGTCTCAGTTCCACAACCTTCTTCACCGCAAGAGAAGCTTTCGAGGTCCTTCCTCCTCTTCCCCTTCTCCCCAATCTCTAATATTATTTCTTACTGTTCCTTTTCATTTGCCTAATTCTCTTTTTCTCTCTTCCCAGGCATTCACAGCGCCATTTCCAAGATCAACCCCGAGCTTCTCAAATCTGTCATTGGATCTGCCTCCATTGCTCTGCCTCCCACTCCCAAGGACGCCAACCACAACCTCCTCTCGCCTTTGCCTCTCTATAACCCTCTCTTCAGGTAA

mRNA sequence

ATTCCGACTCTCTCCCTCTCTGTAACTCTCTGTAACGCTATTTTCCTCCAATTCCCTCTTCTTCCTCCTCCTTCATTCTCCCGCCATGGCTAGGGCTACTGTCGAGCTTGATTTCTTCGGCCTCGAGAAGAAGGCCTCCTCCAGGTCTCAGTTCCACAACCTTCTTCACCGCAAGAGAAGCTTTCGAGGCATTCACAGCGCCATTTCCAAGATCAACCCCGAGCTTCTCAAATCTGTCATTGGATCTGCCTCCATTGCTCTGCCTCCCACTCCCAAGGACGCCAACCACAACCTCCTCTCGCCTTTGCCTCTCTATAACCCTCTCTTCAGGTAA

Coding sequence (CDS)

ATGGCTAGGGCTACTGTCGAGCTTGATTTCTTCGGCCTCGAGAAGAAGGCCTCCTCCAGGTCTCAGTTCCACAACCTTCTTCACCGCAAGAGAAGCTTTCGAGGCATTCACAGCGCCATTTCCAAGATCAACCCCGAGCTTCTCAAATCTGTCATTGGATCTGCCTCCATTGCTCTGCCTCCCACTCCCAAGGACGCCAACCACAACCTCCTCTCGCCTTTGCCTCTCTATAACCCTCTCTTCAGGTAA

Protein sequence

MARATVELDFFGLEKKASSRSQFHNLLHRKRSFRGIHSAISKINPELLKSVIGSASIALPPTPKDANHNLLSPLPLYNPLFR

Homology

[Close]

BLAST of Carg11568 vs. NCBI nr
Match: XP_023547597.1 (protein TIFY 9-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 162.9 bits (411), Expect = 1.1e-36
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MARATVELDFFGLEKKASSRSQFHNLLHRKRSFRGIHSAISKINPELLKSVIGSASIALP 60
          MARATVELDFFGLEKKASSRSQFHNLLHRKRSFRGIHSAISKINPELLKSVIGSASIALP
Sbjct: 1  MARATVELDFFGLEKKASSRSQFHNLLHRKRSFRGIHSAISKINPELLKSVIGSASIALP 60

Query: 61 PTPKDANHNLLSPLPLYNPLFR 83
          PTPKDANHNLLSPLPLYNPLFR
Sbjct: 61 PTPKDANHNLLSPLPLYNPLFR 82

[Close]

BLAST of Carg11568 vs. NCBI nr
Match: XP_022953182.1 (protein TIFY 9-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 162.9 bits (411), Expect = 1.1e-36
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MARATVELDFFGLEKKASSRSQFHNLLHRKRSFRGIHSAISKINPELLKSVIGSASIALP 60
          MARATVELDFFGLEKKASSRSQFHNLLHRKRSFRGIHSAISKINPELLKSVIGSASIALP
Sbjct: 1  MARATVELDFFGLEKKASSRSQFHNLLHRKRSFRGIHSAISKINPELLKSVIGSASIALP 60

Query: 61 PTPKDANHNLLSPLPLYNPLFR 83
          PTPKDANHNLLSPLPLYNPLFR
Sbjct: 61 PTPKDANHNLLSPLPLYNPLFR 82

[Close]

BLAST of Carg11568 vs. NCBI nr
Match: XP_022953183.1 (protein TIFY 9-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 162.9 bits (411), Expect = 1.1e-36
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MARATVELDFFGLEKKASSRSQFHNLLHRKRSFRGIHSAISKINPELLKSVIGSASIALP 60
          MARATVELDFFGLEKKASSRSQFHNLLHRKRSFRGIHSAISKINPELLKSVIGSASIALP
Sbjct: 1  MARATVELDFFGLEKKASSRSQFHNLLHRKRSFRGIHSAISKINPELLKSVIGSASIALP 60

Query: 61 PTPKDANHNLLSPLPLYNPLFR 83
          PTPKDANHNLLSPLPLYNPLFR
Sbjct: 61 PTPKDANHNLLSPLPLYNPLFR 82

[Close]

BLAST of Carg11568 vs. NCBI nr
Match: KAG7014624.1 (Protein TIFY 9 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 162.9 bits (411), Expect = 1.1e-36
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MARATVELDFFGLEKKASSRSQFHNLLHRKRSFRGIHSAISKINPELLKSVIGSASIALP 60
          MARATVELDFFGLEKKASSRSQFHNLLHRKRSFRGIHSAISKINPELLKSVIGSASIALP
Sbjct: 1  MARATVELDFFGLEKKASSRSQFHNLLHRKRSFRGIHSAISKINPELLKSVIGSASIALP 60

Query: 61 PTPKDANHNLLSPLPLYNPLFR 83
          PTPKDANHNLLSPLPLYNPLFR
Sbjct: 61 PTPKDANHNLLSPLPLYNPLFR 82

[Close]

BLAST of Carg11568 vs. NCBI nr
Match: XP_022991838.1 (protein TIFY 9-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 162.9 bits (411), Expect = 1.1e-36
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MARATVELDFFGLEKKASSRSQFHNLLHRKRSFRGIHSAISKINPELLKSVIGSASIALP 60
          MARATVELDFFGLEKKASSRSQFHNLLHRKRSFRGIHSAISKINPELLKSVIGSASIALP
Sbjct: 1  MARATVELDFFGLEKKASSRSQFHNLLHRKRSFRGIHSAISKINPELLKSVIGSASIALP 60

Query: 61 PTPKDANHNLLSPLPLYNPLFR 83
          PTPKDANHNLLSPLPLYNPLFR
Sbjct: 61 PTPKDANHNLLSPLPLYNPLFR 82

[Close]

BLAST of Carg11568 vs. ExPASy Swiss-Prot
Match: Q93ZM9 (Protein TIFY 9 OS=Arabidopsis thaliana OX=3702 GN=TIFY9 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.6e-09
Identity = 34/77 (44.16%), Postives = 51/77 (66.23%), Query Frame = 0


Query: 1  MARATVELDFFGLEKKASS---RSQFHNLLHRKRSFRGIHSAISKINPELLKSVIGSA-- 60
          M++AT+ELDF GLEKK ++   + +F   L R+RSFR I  AISKI+PE++KS++ S   
Sbjct: 1  MSKATIELDFLGLEKKQTNNAPKPKFQKFLDRRRSFRDIQGAISKIDPEIIKSLLASTGN 60

Query: 61 -------SIALPPTPKD 66
                 S ++P TP++
Sbjct: 61 NSDSSAKSRSVPSTPRE 77

[Close]

BLAST of Carg11568 vs. ExPASy TrEMBL
Match: A0A6J1JXF0 (protein TIFY 9-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111488365 PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 5.6e-37
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MARATVELDFFGLEKKASSRSQFHNLLHRKRSFRGIHSAISKINPELLKSVIGSASIALP 60
          MARATVELDFFGLEKKASSRSQFHNLLHRKRSFRGIHSAISKINPELLKSVIGSASIALP
Sbjct: 1  MARATVELDFFGLEKKASSRSQFHNLLHRKRSFRGIHSAISKINPELLKSVIGSASIALP 60

Query: 61 PTPKDANHNLLSPLPLYNPLFR 83
          PTPKDANHNLLSPLPLYNPLFR
Sbjct: 61 PTPKDANHNLLSPLPLYNPLFR 82

[Close]

BLAST of Carg11568 vs. ExPASy TrEMBL
Match: A0A6J1JVY1 (protein TIFY 9-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111488365 PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 5.6e-37
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MARATVELDFFGLEKKASSRSQFHNLLHRKRSFRGIHSAISKINPELLKSVIGSASIALP 60
          MARATVELDFFGLEKKASSRSQFHNLLHRKRSFRGIHSAISKINPELLKSVIGSASIALP
Sbjct: 1  MARATVELDFFGLEKKASSRSQFHNLLHRKRSFRGIHSAISKINPELLKSVIGSASIALP 60

Query: 61 PTPKDANHNLLSPLPLYNPLFR 83
          PTPKDANHNLLSPLPLYNPLFR
Sbjct: 61 PTPKDANHNLLSPLPLYNPLFR 82

[Close]

BLAST of Carg11568 vs. ExPASy TrEMBL
Match: A0A6J1GMJ3 (protein TIFY 9-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111455800 PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 5.6e-37
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MARATVELDFFGLEKKASSRSQFHNLLHRKRSFRGIHSAISKINPELLKSVIGSASIALP 60
          MARATVELDFFGLEKKASSRSQFHNLLHRKRSFRGIHSAISKINPELLKSVIGSASIALP
Sbjct: 1  MARATVELDFFGLEKKASSRSQFHNLLHRKRSFRGIHSAISKINPELLKSVIGSASIALP 60

Query: 61 PTPKDANHNLLSPLPLYNPLFR 83
          PTPKDANHNLLSPLPLYNPLFR
Sbjct: 61 PTPKDANHNLLSPLPLYNPLFR 82

[Close]

BLAST of Carg11568 vs. ExPASy TrEMBL
Match: A0A6J1GMQ1 (protein TIFY 9-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111455800 PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 5.6e-37
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MARATVELDFFGLEKKASSRSQFHNLLHRKRSFRGIHSAISKINPELLKSVIGSASIALP 60
          MARATVELDFFGLEKKASSRSQFHNLLHRKRSFRGIHSAISKINPELLKSVIGSASIALP
Sbjct: 1  MARATVELDFFGLEKKASSRSQFHNLLHRKRSFRGIHSAISKINPELLKSVIGSASIALP 60

Query: 61 PTPKDANHNLLSPLPLYNPLFR 83
          PTPKDANHNLLSPLPLYNPLFR
Sbjct: 61 PTPKDANHNLLSPLPLYNPLFR 82

[Close]

BLAST of Carg11568 vs. ExPASy TrEMBL
Match: A0A0A0K9H7 (Tify domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G091930 PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 8.6e-30
Identity = 70/83 (84.34%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 1  MARATVELDFFGLEKKASSRSQFHNLLHRKRSFRGIHSAISKINPELLKSVIGSASIALP 60
          MARATVELDFFGLEK+ASS+SQFH+LLHRKRSFRGIH+AISKI+P+LLKSVIGSASI+LP
Sbjct: 1  MARATVELDFFGLEKEASSKSQFHSLLHRKRSFRGIHNAISKIDPQLLKSVIGSASISLP 60

Query: 61 PTPK-DANHNLLSPLPLYNPLFR 83
          PTP+  ANHN+LSPLPLY PL+R
Sbjct: 61 PTPEAAANHNVLSPLPLYTPLYR 83

[Close]

BLAST of Carg11568 vs. TAIR 10
Match: AT5G13220.2 (jasmonate-zim-domain protein 10 )

HSP 1 Score: 62.0 bits (149), Expect = 2.6e-10
Identity = 34/77 (44.16%), Postives = 51/77 (66.23%), Query Frame = 0


Query: 1  MARATVELDFFGLEKKASS---RSQFHNLLHRKRSFRGIHSAISKINPELLKSVIGSA-- 60
          M++AT+ELDF GLEKK ++   + +F   L R+RSFR I  AISKI+PE++KS++ S   
Sbjct: 1  MSKATIELDFLGLEKKQTNNAPKPKFQKFLDRRRSFRDIQGAISKIDPEIIKSLLASTGN 60

Query: 61 -------SIALPPTPKD 66
                 S ++P TP++
Sbjct: 61 NSDSSAKSRSVPSTPRE 77

[Close]

BLAST of Carg11568 vs. TAIR 10
Match: AT5G13220.1 (jasmonate-zim-domain protein 10 )

HSP 1 Score: 62.0 bits (149), Expect = 2.6e-10
Identity = 34/77 (44.16%), Postives = 51/77 (66.23%), Query Frame = 0


Query: 1  MARATVELDFFGLEKKASS---RSQFHNLLHRKRSFRGIHSAISKINPELLKSVIGSA-- 60
          M++AT+ELDF GLEKK ++   + +F   L R+RSFR I  AISKI+PE++KS++ S   
Sbjct: 1  MSKATIELDFLGLEKKQTNNAPKPKFQKFLDRRRSFRDIQGAISKIDPEIIKSLLASTGN 60

Query: 61 -------SIALPPTPKD 66
                 S ++P TP++
Sbjct: 61 NSDSSAKSRSVPSTPRE 77

[Close]

BLAST of Carg11568 vs. TAIR 10
Match: AT5G13220.3 (jasmonate-zim-domain protein 10 )

HSP 1 Score: 62.0 bits (149), Expect = 2.6e-10
Identity = 34/77 (44.16%), Postives = 51/77 (66.23%), Query Frame = 0


Query: 1  MARATVELDFFGLEKKASS---RSQFHNLLHRKRSFRGIHSAISKINPELLKSVIGSA-- 60
          M++AT+ELDF GLEKK ++   + +F   L R+RSFR I  AISKI+PE++KS++ S   
Sbjct: 1  MSKATIELDFLGLEKKQTNNAPKPKFQKFLDRRRSFRDIQGAISKIDPEIIKSLLASTGN 60

Query: 61 -------SIALPPTPKD 66
                 S ++P TP++
Sbjct: 61 NSDSSAKSRSVPSTPRE 77

[Close]

BLAST of Carg11568 vs. TAIR 10
Match: AT5G13220.4 (jasmonate-zim-domain protein 10 )

HSP 1 Score: 62.0 bits (149), Expect = 2.6e-10
Identity = 34/77 (44.16%), Postives = 51/77 (66.23%), Query Frame = 0


Query: 1  MARATVELDFFGLEKKASS---RSQFHNLLHRKRSFRGIHSAISKINPELLKSVIGSA-- 60
          M++AT+ELDF GLEKK ++   + +F   L R+RSFR I  AISKI+PE++KS++ S   
Sbjct: 1  MSKATIELDFLGLEKKQTNNAPKPKFQKFLDRRRSFRDIQGAISKIDPEIIKSLLASTGN 60

Query: 61 -------SIALPPTPKD 66
                 S ++P TP++
Sbjct: 61 NSDSSAKSRSVPSTPRE 77

The following BLAST results are available for this feature:

BLAST of Carg11568 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023547597.1	1.1e-36	100.00	protein TIFY 9-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022953182.1	1.1e-36	100.00	protein TIFY 9-like isoform X1 [Cucurbita moschata]	[more]
XP_022953183.1	1.1e-36	100.00	protein TIFY 9-like isoform X2 [Cucurbita moschata]	[more]
KAG7014624.1	1.1e-36	100.00	Protein TIFY 9 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022991838.1	1.1e-36	100.00	protein TIFY 9-like isoform X1 [Cucurbita maxima]	[more]

BLAST of Carg11568 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93ZM9	3.6e-09	44.16	Protein TIFY 9 OS=Arabidopsis thaliana OX=3702 GN=TIFY9 PE=1 SV=1	[more]

BLAST of Carg11568 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JXF0	5.6e-37	100.00	protein TIFY 9-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111488365 PE=3 ...	[more]
A0A6J1JVY1	5.6e-37	100.00	protein TIFY 9-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111488365 PE=3 ...	[more]
A0A6J1GMJ3	5.6e-37	100.00	protein TIFY 9-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111455800 PE=...	[more]
A0A6J1GMQ1	5.6e-37	100.00	protein TIFY 9-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111455800 PE=...	[more]
A0A0A0K9H7	8.6e-30	84.34	Tify domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G091930 PE=3 S...	[more]

BLAST of Carg11568 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G13220.2	2.6e-10	44.16	jasmonate-zim-domain protein 10	[more]
AT5G13220.1	2.6e-10	44.16	jasmonate-zim-domain protein 10	[more]
AT5G13220.3	2.6e-10	44.16	jasmonate-zim-domain protein 10	[more]
AT5G13220.4	2.6e-10	44.16	jasmonate-zim-domain protein 10	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33077:SF96	BNAC03G71460D PROTEIN	coord: 1..55
IPR040390	TIFY/JAZ family	PANTHER	PTHR33077	PROTEIN TIFY 4A-RELATED-RELATED	coord: 1..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11568-RA	Carg11568-RA	mRNA