Carg11549 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg11549
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCRIB domain-containing protein RIC6-like
LocationCarg_Chr17: 9694430 .. 9694986 (-)
RNA-Seq ExpressionCarg11549
SyntenyCarg11549
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTTAGTACGGCACCATCGATTACATCCGCTCCTTATAATCGTTCCTACTTGTGCAAATATCAAAGACAAAAACGACGTTCCTACAAAACAGGCCGGTGAAGGTAAGCTAAACACTTTGATATTATTTTAGGGTTTGAGATTTGTGTCTATTTGATGTTACGAATTTATAAACAAAATGGTTTAGATGATAAGGAAAGTGGAGAGAAGGGTTCAAACAGCTCGCCGGACGTGCGGCCTAAATCATCAAAACACCGGTCGTCAAGTGAGTCTCCAACCAGCCATGAAAGATCAGAGAGACACAAAGCAAGACGGTCTTCCAAGTCAAAGGAGAGCTCCGACAAAAAACAAAGCAGCCGAGGAGGGGAGGAGCAGAATGAGTCGCCCAACTCGAGCCTCCCAGACATCCCAAGACACGGGCGGCGGAAGAAAACGAGCAGATCCAAGCCCCATGCTGCGGATACATACAAGTCCTCGCATTCGGATCCTGGTCCCAACTCTGGAACGGAATCCATATCTGTATCCCTGGAAACCACCATGTGTCAGACACCTTAG

mRNA sequence

ATGAATTTAGTACGGCACCATCGATTACATCCGCTCCTTATAATCGTTCCTACTTGTGCAAATATCAAAGACAAAAACGACGTTCCTACAAAACAGGCCGGTGAAGATGATAAGGAAAGTGGAGAGAAGGGTTCAAACAGCTCGCCGGACGTGCGGCCTAAATCATCAAAACACCGGTCGTCAAGTGAGTCTCCAACCAGCCATGAAAGATCAGAGAGACACAAAGCAAGACGGTCTTCCAAGTCAAAGGAGAGCTCCGACAAAAAACAAAGCAGCCGAGGAGGGGAGGAGCAGAATGAGTCGCCCAACTCGAGCCTCCCAGACATCCCAAGACACGGGCGGCGGAAGAAAACGAGCAGATCCAAGCCCCATGCTGCGGATACATACAAGTCCTCGCATTCGGATCCTGGTCCCAACTCTGGAACGGAATCCATATCTGTATCCCTGGAAACCACCATGTGTCAGACACCTTAG

Coding sequence (CDS)

ATGAATTTAGTACGGCACCATCGATTACATCCGCTCCTTATAATCGTTCCTACTTGTGCAAATATCAAAGACAAAAACGACGTTCCTACAAAACAGGCCGGTGAAGATGATAAGGAAAGTGGAGAGAAGGGTTCAAACAGCTCGCCGGACGTGCGGCCTAAATCATCAAAACACCGGTCGTCAAGTGAGTCTCCAACCAGCCATGAAAGATCAGAGAGACACAAAGCAAGACGGTCTTCCAAGTCAAAGGAGAGCTCCGACAAAAAACAAAGCAGCCGAGGAGGGGAGGAGCAGAATGAGTCGCCCAACTCGAGCCTCCCAGACATCCCAAGACACGGGCGGCGGAAGAAAACGAGCAGATCCAAGCCCCATGCTGCGGATACATACAAGTCCTCGCATTCGGATCCTGGTCCCAACTCTGGAACGGAATCCATATCTGTATCCCTGGAAACCACCATGTGTCAGACACCTTAG

Protein sequence

MNLVRHHRLHPLLIIVPTCANIKDKNDVPTKQAGEDDKESGEKGSNSSPDVRPKSSKHRSSSESPTSHERSERHKARRSSKSKESSDKKQSSRGGEEQNESPNSSLPDIPRHGRRKKTSRSKPHAADTYKSSHSDPGPNSGTESISVSLETTMCQTP
Homology
BLAST of Carg11549 vs. NCBI nr
Match: KAG7014607.1 (hypothetical protein SDJN02_24786, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 287.0 bits (733), Expect = 1.0e-73
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0

Query: 1   MNLVRHHRLHPLLIIVPTCANIKDKNDVPTKQAGEDDKESGEKGSNSSPDVRPKSSKHRS 60
           MNLVRHHRLHPLLIIVPTCANIKDKNDVPTKQAGEDDKESGEKGSNSSPDVRPKSSKHRS
Sbjct: 1   MNLVRHHRLHPLLIIVPTCANIKDKNDVPTKQAGEDDKESGEKGSNSSPDVRPKSSKHRS 60

Query: 61  SSESPTSHERSERHKARRSSKSKESSDKKQSSRGGEEQNESPNSSLPDIPRHGRRKKTSR 120
           SSESPTSHERSERHKARRSSKSKESSDKKQSSRGGEEQNESPNSSLPDIPRHGRRKKTSR
Sbjct: 61  SSESPTSHERSERHKARRSSKSKESSDKKQSSRGGEEQNESPNSSLPDIPRHGRRKKTSR 120

Query: 121 SKPHAADTYKSSHSDPGPNSGTESISVSLETTMCQTP 158
           SKPHAADTYKSSHSDPGPNSGTESISVSLETTMCQTP
Sbjct: 121 SKPHAADTYKSSHSDPGPNSGTESISVSLETTMCQTP 157

BLAST of Carg11549 vs. NCBI nr
Match: XP_022953885.1 (CRIB domain-containing protein RIC6-like [Cucurbita moschata])

HSP 1 Score: 243.4 bits (620), Expect = 1.3e-60
Identity = 137/140 (97.86%), Postives = 137/140 (97.86%), Query Frame = 0

Query: 18  TCANIKDKNDVPTKQAGEDDKESGEKGSNSSPDVRPKSSKHRSSSESPTSHERSERHKAR 77
           T ANIKDKNDV TKQAGEDDKESGEKGSNSSPDVRPKSSKHRSSSESPTSHERSERHKAR
Sbjct: 73  TRANIKDKNDVSTKQAGEDDKESGEKGSNSSPDVRPKSSKHRSSSESPTSHERSERHKAR 132

Query: 78  RSSKSKESSDKKQSSRGGEEQNESPNSSLPDIPRHGRRKKTSRSKPHAADTYKSSHSDPG 137
           RSSKSKESSDKKQSSRGGEEQNESPNSSLPDIPRHGRRKKTSRSKPHAAD YKSSHSDPG
Sbjct: 133 RSSKSKESSDKKQSSRGGEEQNESPNSSLPDIPRHGRRKKTSRSKPHAADAYKSSHSDPG 192

Query: 138 PNSGTESISVSLETTMCQTP 158
           PNSGTESISVSLETTMCQTP
Sbjct: 193 PNSGTESISVSLETTMCQTP 212

BLAST of Carg11549 vs. NCBI nr
Match: KAG6576091.1 (Glutathione gamma-glutamylcysteinyltransferase 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 231.1 bits (588), Expect = 6.6e-57
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0

Query: 18  TCANIKDKNDVPTKQAGEDDKESGEKGSNSSPDVRPKSSKHRSSSESPTSHERSERHKAR 77
           TCANIKDKNDVPTKQAGEDDKESGEKGSNSSPDVRPKSSKHRSSSESPTSHERSERHKAR
Sbjct: 46  TCANIKDKNDVPTKQAGEDDKESGEKGSNSSPDVRPKSSKHRSSSESPTSHERSERHKAR 105

Query: 78  RSSKSKESSDKKQSSRGGEEQNESPNSSLPDIPRHGRRKKTSRSKPHAADTYKSSHSDPG 137
           RSSKSKESSDKKQSSRGGEEQNESPNSSLPDIPRHGRRKKTSRSKPHAADTYKSSHSDPG
Sbjct: 106 RSSKSKESSDKKQSSRGGEEQNESPNSSLPDIPRHGRRKKTSRSKPHAADTYKSSHSDPG 165

Query: 138 PNSGTESIS 147
           PNSGTESIS
Sbjct: 166 PNSGTESIS 174

BLAST of Carg11549 vs. NCBI nr
Match: XP_022991756.1 (CRIB domain-containing protein RIC6-like [Cucurbita maxima])

HSP 1 Score: 225.7 bits (574), Expect = 2.8e-55
Identity = 129/140 (92.14%), Postives = 131/140 (93.57%), Query Frame = 0

Query: 18  TCANIKDKNDVPTKQAGEDDKESGEKGSNSSPDVRPKSSKHRSSSESPTSHERSERHKAR 77
           T ANIKDK+DV TKQA ED+ ESGEKGSN SPDVRPKSSKHRSSSESPTS ERSERHKAR
Sbjct: 46  TRANIKDKDDVSTKQASEDESESGEKGSNRSPDVRPKSSKHRSSSESPTSQERSERHKAR 105

Query: 78  RSSKSKESSDKKQSSRGGEEQNESPNSSLPDIPRHGRRKKTSRSKPHAADTYKSSHSDPG 137
           RSSKSKESSDKKQSS GGE QNESPNSSLPDIPRHGRRKKTSRSKPHAADTYKSSHSDPG
Sbjct: 106 RSSKSKESSDKKQSSPGGEAQNESPNSSLPDIPRHGRRKKTSRSKPHAADTYKSSHSDPG 165

Query: 138 PNSGTESISVSLETTMCQTP 158
           PNSGTESISVSLE TMCQTP
Sbjct: 166 PNSGTESISVSLEATMCQTP 185

BLAST of Carg11549 vs. NCBI nr
Match: XP_023549435.1 (CRIB domain-containing protein RIC6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 224.2 bits (570), Expect = 8.0e-55
Identity = 128/141 (90.78%), Postives = 133/141 (94.33%), Query Frame = 0

Query: 17  PTCANIKDKNDVPTKQAGEDDKESGEKGSNSSPDVRPKSSKHRSSSESPTSHERSERHKA 76
           PT AN KDK++  TKQAGED+ ESGEKGSNSSPDVRPKSSKHRSSSES TS ERSERHKA
Sbjct: 69  PTRANSKDKDNDSTKQAGEDESESGEKGSNSSPDVRPKSSKHRSSSESLTSQERSERHKA 128

Query: 77  RRSSKSKESSDKKQSSRGGEEQNESPNSSLPDIPRHGRRKKTSRSKPHAADTYKSSHSDP 136
           RRSSKSKESSDKKQSSRGGEEQNESPNSSLPDIPRHGRRKKTS+SKPHAADTYKSSHSDP
Sbjct: 129 RRSSKSKESSDKKQSSRGGEEQNESPNSSLPDIPRHGRRKKTSKSKPHAADTYKSSHSDP 188

Query: 137 GPNSGTESISVSLETTMCQTP 158
           GPN+GTESI VSLETTMCQTP
Sbjct: 189 GPNTGTESICVSLETTMCQTP 209

BLAST of Carg11549 vs. ExPASy TrEMBL
Match: A0A6J1GQW7 (CRIB domain-containing protein RIC6-like OS=Cucurbita moschata OX=3662 GN=LOC111456289 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 6.2e-61
Identity = 137/140 (97.86%), Postives = 137/140 (97.86%), Query Frame = 0

Query: 18  TCANIKDKNDVPTKQAGEDDKESGEKGSNSSPDVRPKSSKHRSSSESPTSHERSERHKAR 77
           T ANIKDKNDV TKQAGEDDKESGEKGSNSSPDVRPKSSKHRSSSESPTSHERSERHKAR
Sbjct: 73  TRANIKDKNDVSTKQAGEDDKESGEKGSNSSPDVRPKSSKHRSSSESPTSHERSERHKAR 132

Query: 78  RSSKSKESSDKKQSSRGGEEQNESPNSSLPDIPRHGRRKKTSRSKPHAADTYKSSHSDPG 137
           RSSKSKESSDKKQSSRGGEEQNESPNSSLPDIPRHGRRKKTSRSKPHAAD YKSSHSDPG
Sbjct: 133 RSSKSKESSDKKQSSRGGEEQNESPNSSLPDIPRHGRRKKTSRSKPHAADAYKSSHSDPG 192

Query: 138 PNSGTESISVSLETTMCQTP 158
           PNSGTESISVSLETTMCQTP
Sbjct: 193 PNSGTESISVSLETTMCQTP 212

BLAST of Carg11549 vs. ExPASy TrEMBL
Match: A0A6J1JRN8 (CRIB domain-containing protein RIC6-like OS=Cucurbita maxima OX=3661 GN=LOC111488288 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.3e-55
Identity = 129/140 (92.14%), Postives = 131/140 (93.57%), Query Frame = 0

Query: 18  TCANIKDKNDVPTKQAGEDDKESGEKGSNSSPDVRPKSSKHRSSSESPTSHERSERHKAR 77
           T ANIKDK+DV TKQA ED+ ESGEKGSN SPDVRPKSSKHRSSSESPTS ERSERHKAR
Sbjct: 46  TRANIKDKDDVSTKQASEDESESGEKGSNRSPDVRPKSSKHRSSSESPTSQERSERHKAR 105

Query: 78  RSSKSKESSDKKQSSRGGEEQNESPNSSLPDIPRHGRRKKTSRSKPHAADTYKSSHSDPG 137
           RSSKSKESSDKKQSS GGE QNESPNSSLPDIPRHGRRKKTSRSKPHAADTYKSSHSDPG
Sbjct: 106 RSSKSKESSDKKQSSPGGEAQNESPNSSLPDIPRHGRRKKTSRSKPHAADTYKSSHSDPG 165

Query: 138 PNSGTESISVSLETTMCQTP 158
           PNSGTESISVSLE TMCQTP
Sbjct: 166 PNSGTESISVSLEATMCQTP 185

BLAST of Carg11549 vs. ExPASy TrEMBL
Match: A0A0A0KF43 (CRIB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G088140 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 2.2e-13
Identity = 75/149 (50.34%), Postives = 87/149 (58.39%), Query Frame = 0

Query: 24  DKNDVPTKQAGED------DKESGEKGSNSSPDVRPKSSKHRSSS-------ESPTSHER 83
           +K DV  K   ED       K S     N + DV  K+SKH SSS       ESPT  ER
Sbjct: 50  NKEDVSVKWVSEDRPSRRVAKGSSSSAKNLTADV-TKTSKHPSSSSTTSSSTESPTCRER 109

Query: 84  -SERHKARRSSKSKESSDKKQSSRGGEEQNESPNSSLPDIPRHGRRKKTSRSKPH-AADT 143
            SER K RRSSKSKE      SS      N SP  SLPD+PR  RRKKT+R+KPH A +T
Sbjct: 110 SSERQKTRRSSKSKE-----PSSSDNNNNNHSPTLSLPDVPRQTRRKKTTRTKPHLAPET 169

Query: 144 YKSSHSDPGPNSGTESISVSLETTMCQTP 158
           YKS HSDPG  + T SIS+S ++ +CQTP
Sbjct: 170 YKSPHSDPGSTTATGSISLSKDSDLCQTP 192

BLAST of Carg11549 vs. ExPASy TrEMBL
Match: A0A5A7T9D8 (CRIB domain-containing protein RIC6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G001680 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 3.7e-13
Identity = 77/152 (50.66%), Postives = 92/152 (60.53%), Query Frame = 0

Query: 24  DKNDVPTKQAGEDDKESGEKGSNSS-------PDVRPKSSKHRSSS-------ESPTSHE 83
           +K DV  K   ED     EKG +SS        DV  K+SKH SSS       +SPT  E
Sbjct: 50  NKEDVSVKGVSEDRSRRVEKGRSSSSAKNLTADDVVTKTSKHPSSSSTTSSSTDSPTCRE 109

Query: 84  R-SERHKARRSSKSKESSDKKQSSRGGEEQNESPNSSLPDIPRHG-RRKKTSRSKPH-AA 143
           R SER K RRSSKSKES     SS      N SP  SLPD+PR   RRKKT+R+KPH A 
Sbjct: 110 RSSERQKTRRSSKSKES-----SSSSDNNNNHSPTLSLPDVPRQNPRRKKTTRTKPHLAP 169

Query: 144 DTYKSSHSDPGPN-SGTESISVSLETTMCQTP 158
           +TYKS +SDPG + + T+SIS+S +T +CQTP
Sbjct: 170 ETYKSPYSDPGASTTATDSISLSKDTDLCQTP 196

BLAST of Carg11549 vs. ExPASy TrEMBL
Match: A0A1S3CD78 (CRIB domain-containing protein RIC6-like OS=Cucumis melo OX=3656 GN=LOC103499079 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 3.7e-13
Identity = 77/152 (50.66%), Postives = 92/152 (60.53%), Query Frame = 0

Query: 24  DKNDVPTKQAGEDDKESGEKGSNSS-------PDVRPKSSKHRSSS-------ESPTSHE 83
           +K DV  K   ED     EKG +SS        DV  K+SKH SSS       +SPT  E
Sbjct: 50  NKEDVSVKGVSEDRSRRVEKGRSSSSAKNLTADDVVTKTSKHPSSSSTTPSSTDSPTCRE 109

Query: 84  R-SERHKARRSSKSKESSDKKQSSRGGEEQNESPNSSLPDIPRHG-RRKKTSRSKPH-AA 143
           R SER K RRSSKSKES     SS      N SP  SLPD+PR   RRKKT+R+KPH A 
Sbjct: 110 RSSERQKTRRSSKSKES-----SSSSDNNNNHSPTLSLPDVPRQNPRRKKTTRTKPHLAP 169

Query: 144 DTYKSSHSDPGPN-SGTESISVSLETTMCQTP 158
           +TYKS +SDPG + + T+SIS+S +T +CQTP
Sbjct: 170 ETYKSPYSDPGASTTATDSISLSKDTDLCQTP 196

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7014607.11.0e-73100.00hypothetical protein SDJN02_24786, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022953885.11.3e-6097.86CRIB domain-containing protein RIC6-like [Cucurbita moschata][more]
KAG6576091.16.6e-57100.00Glutathione gamma-glutamylcysteinyltransferase 1, partial [Cucurbita argyrosperm... [more]
XP_022991756.12.8e-5592.14CRIB domain-containing protein RIC6-like [Cucurbita maxima][more]
XP_023549435.18.0e-5590.78CRIB domain-containing protein RIC6-like [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1GQW76.2e-6197.86CRIB domain-containing protein RIC6-like OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1JRN81.3e-5592.14CRIB domain-containing protein RIC6-like OS=Cucurbita maxima OX=3661 GN=LOC11148... [more]
A0A0A0KF432.2e-1350.34CRIB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G088140 PE=4 S... [more]
A0A5A7T9D83.7e-1350.66CRIB domain-containing protein RIC6-like OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A1S3CD783.7e-1350.66CRIB domain-containing protein RIC6-like OS=Cucumis melo OX=3656 GN=LOC103499079... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..157
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 132..157
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..95
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..45

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg11549-RACarg11549-RAmRNA