Carg11392 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg11392
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Photosystem II 10 kDa polypeptide, chloroplastic
Location	Carg_Chr16: 2656510 .. 2658451 (+)
RNA-Seq Expression	Carg11392
Synteny	Carg11392

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTGCAAATTTTCGAGCCAAAGCAGAAGAAGAAGAAGAAGAAGAACAAGAAGAAGCTTATCGATTGGAAATGGCGGCCTCGGTGATGACCTCAGTGAGTCTCAAACCAGCTCCTTTCACCGTCGAGAAAGCGGCGAGAGGTATTCCGTCTCTGGCGAGAAAATCCGGCTTCTTCAAGGTCGAGGCCAGTGGTGGGAAGAAGATTAAGACCGACAAACCCTATGGTAAAATTAGCCGCCGATTGATGCGATTTTTGGCTTATTGGAGACGATTCTGACTCGTTTTTCGATGTAATGCGTGTAGGAATCAATGGATCGATGAATTTGAGGGATGGAGTTGATGCATCGGGAAGGAAGGGCAAGGTTGCTAAACAGATTTCTGAAATCTCTTCATTTCATCATCTTATTCGTTACTCTGCAACTTCTAATTTGATACTGTTTTCGAATTTGATTCCTTTAGGGAAAGGGAGTCTACCAGTACGTCGACAAGTACGGAGCCAATGTCGATGGCTACAGGTGAACATCATCTTTCTCATTTTCTTTTAGTTTTATTGGCTCTGATTTTGTTCTTAGTTCTCTGATTTGAAAATCAAACTGAATTCAAAGCGTTACTGTTCATGTTTAATTTGTAAATCTTCCATTGTCACCGTTTCAACAAACCTCATACGTATTGTATTCTCAACTTTGCAGTCCCATCTACGACACCAAAGACTGGTCTCCAAGTGGTGATGTCTATGTCGGTGGTAAGTTCTTCAACCACTTTTGAATCTGCTATCCTATTTCTTTAGAATCATTCACAGTAGATTACAGAATTGAGTTTTACGTTAGCAATTTGAATATGCCTGCTGAATAAATTTATGACTGAGTATTCAATTTCTGAAATTGTAAGAACATATGCATCTAATCTACTTTCAGTAGACGATACAGAAATTGTACAGAGCAGAAATCATGTTGTGCTGTTTGAAATTGGGTTTTCAATTTCTAATTTTTGTTTCATTCAGAATGATTGATTTTCCGTTTTTCATCTTGAATTTCTATCACTGATTCACTTTTGGTTATTGATGGATATGAACTTTCTTCTTCTTCTTCCTGCCTCAAAAGTTAGGATTCGTTTTTTAAAAAAGTTTGATTGTAGCTTATTCAACAACGACACCTTTTATCTAATTCAAGCGTACAAAATGAGTTTGATTATTTCGCTCTCAAAATTAATTATCATAGTATTGTAATTGATGTATGTTTACTATGCTCAACAAACATTCGATAAGTATCAAACTTGTATTCATTTTGTACGACTAGCGTCTTATACACGTTTATTGTGCAAACACGTGTATTTAAATTCAAATCTGTACTTCTTAGAGCATAAATGTAACAGCCTACGCCTACCACTAGTAGATATTATCCGCTTTGACTCGTTACATATTGCCTTCAACCTTACGGTTTTAAAACGCGTCTACTAGAGAGAGGTTCCACACCCTTGTAAGATTATGAAAGGAAGCTCAAAAGGAAAGCACAAAGAAGACGATATGTGCTAGTGGTGGGCTTGGACTGTTACAATAAATCACCACTAGACCCAACTTTAGCTATAGATTACGATAAGTTTGAATAAGATCTAAATGCCTGTTAAGGGATAGAATTGAAATATGGTGTTGCATTGGGATTAAAGATGAATATATTTGCTGATATTGTGGAGAACATTGAATATTAGGTACCACTGGGTTAGCCATTTGGGCAGTGACCTTGGCCGGTCTTCTTGCTGGAGGTGCTCTTCTTGTGTACAACACCAGTGCTTTGGCGCAGTAAGCTGGAGGGAAGTTCAGAAGTCTGTTCTTTTCACTTTAGTTTTTGTAGCATATTATTATGAACAACATTATCAAGAAATTCGATGTAATTATCTGGACAACTGCGTCGTAAATGCTTGGTAAGATAAATTCTTCTCTTTCCTGT

mRNA sequence

ATTGCAAATTTTCGAGCCAAAGCAGAAGAAGAAGAAGAAGAAGAACAAGAAGAAGCTTATCGATTGGAAATGGCGGCCTCGGTGATGACCTCAGTGAGTCTCAAACCAGCTCCTTTCACCGTCGAGAAAGCGGCGAGAGGTATTCCGTCTCTGGCGAGAAAATCCGGCTTCTTCAAGGTCGAGGCCAGTGGTGGGAAGAAGATTAAGACCGACAAACCCTATGGAATCAATGGATCGATGAATTTGAGGGATGGAGTTGATGCATCGGGAAGGAAGGGCAAGGGAAAGGGAGTCTACCAGTACGTCGACAAGTACGGAGCCAATGTCGATGGCTACAGTCCCATCTACGACACCAAAGACTGGTCTCCAAGTGGTGATGTCTATGTCGGTGGTACCACTGGGTTAGCCATTTGGGCAGTGACCTTGGCCGGTCTTCTTGCTGGAGGTGCTCTTCTTGTGTACAACACCAGTGCTTTGGCGCAGTAAGCTGGAGGGAAGTTCAGAAGTCTGTTCTTTTCACTTTAGTTTTTGTAGCATATTATTATGAACAACATTATCAAGAAATTCGATGTAATTATCTGGACAACTGCGTCGTAAATGCTTGGTAAGATAAATTCTTCTCTTTCCTGT

Coding sequence (CDS)

ATGGCGGCCTCGGTGATGACCTCAGTGAGTCTCAAACCAGCTCCTTTCACCGTCGAGAAAGCGGCGAGAGGTATTCCGTCTCTGGCGAGAAAATCCGGCTTCTTCAAGGTCGAGGCCAGTGGTGGGAAGAAGATTAAGACCGACAAACCCTATGGAATCAATGGATCGATGAATTTGAGGGATGGAGTTGATGCATCGGGAAGGAAGGGCAAGGGAAAGGGAGTCTACCAGTACGTCGACAAGTACGGAGCCAATGTCGATGGCTACAGTCCCATCTACGACACCAAAGACTGGTCTCCAAGTGGTGATGTCTATGTCGGTGGTACCACTGGGTTAGCCATTTGGGCAGTGACCTTGGCCGGTCTTCTTGCTGGAGGTGCTCTTCTTGTGTACAACACCAGTGCTTTGGCGCAGTAA

Protein sequence

MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ

Homology

[Close]

BLAST of Carg11392 vs. NCBI nr
Match: XP_022931545.1 (photosystem II 10 kDa polypeptide, chloroplastic [Cucurbita moschata] >XP_022985312.1 photosystem II 10 kDa polypeptide, chloroplastic [Cucurbita maxima] >XP_022985313.1 photosystem II 10 kDa polypeptide, chloroplastic [Cucurbita maxima] >KAG6577072.1 Photosystem II 10 kDa polypeptide, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015080.1 Photosystem II 10 kDa polypeptide, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 268.5 bits (685), Expect = 3.3e-68
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLR 60
           MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLR
Sbjct: 1   MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLR 60

Query: 61  DGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLA 120
           DGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLA
Sbjct: 61  DGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLA 120

Query: 121 GLLAGGALLVYNTSALAQ 139
           GLLAGGALLVYNTSALAQ
Sbjct: 121 GLLAGGALLVYNTSALAQ 138

[Close]

BLAST of Carg11392 vs. NCBI nr
Match: XP_023553544.1 (photosystem II 10 kDa polypeptide, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 266.9 bits (681), Expect = 9.5e-68
Identity = 137/138 (99.28%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLR 60
           MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLR
Sbjct: 1   MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLR 60

Query: 61  DGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLA 120
           DGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLA
Sbjct: 61  DGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLA 120

Query: 121 GLLAGGALLVYNTSALAQ 139
           GLLAGGALLVYNTSAL Q
Sbjct: 121 GLLAGGALLVYNTSALVQ 138

[Close]

BLAST of Carg11392 vs. NCBI nr
Match: XP_022136536.1 (photosystem II 10 kDa polypeptide, chloroplastic [Momordica charantia])

HSP 1 Score: 253.4 bits (646), Expect = 1.1e-63
Identity = 129/138 (93.48%), Postives = 134/138 (97.10%), Query Frame = 0


Query: 1   MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLR 60
           MAASVMTSVSLKPAPFTVEK+A+G+PSLAR S  FKVEASGGKKIKTDKPYGINGSMNLR
Sbjct: 1   MAASVMTSVSLKPAPFTVEKSAKGLPSLARTSASFKVEASGGKKIKTDKPYGINGSMNLR 60

Query: 61  DGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLA 120
           DG+DASGRKGKGKGVYQ+VDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLA
Sbjct: 61  DGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLA 120

Query: 121 GLLAGGALLVYNTSALAQ 139
           GLLAGGALLVYNTSAL Q
Sbjct: 121 GLLAGGALLVYNTSALVQ 138

[Close]

BLAST of Carg11392 vs. NCBI nr
Match: XP_038876356.1 (photosystem II 10 kDa polypeptide, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 251.9 bits (642), Expect = 3.2e-63
Identity = 129/138 (93.48%), Postives = 134/138 (97.10%), Query Frame = 0


Query: 1   MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLR 60
           MAASVMTSVSLKPAPFTVEK+A+G+PSLAR S  FKVEASGGKKIKTDKPYGINGSMNLR
Sbjct: 1   MAASVMTSVSLKPAPFTVEKSAKGLPSLARNSVPFKVEASGGKKIKTDKPYGINGSMNLR 60

Query: 61  DGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLA 120
           DG+DASGRKGKGKGVYQ+VDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLA
Sbjct: 61  DGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLA 120

Query: 121 GLLAGGALLVYNTSALAQ 139
           GLLAGGALLVYNTSAL Q
Sbjct: 121 GLLAGGALLVYNTSALVQ 138

[Close]

BLAST of Carg11392 vs. NCBI nr
Match: XP_008451826.1 (PREDICTED: photosystem II 10 kDa polypeptide, chloroplastic [Cucumis melo] >TYK16392.1 photosystem II 10 kDa polypeptide [Cucumis melo var. makuwa])

HSP 1 Score: 249.2 bits (635), Expect = 2.1e-62
Identity = 128/138 (92.75%), Postives = 132/138 (95.65%), Query Frame = 0


Query: 1   MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLR 60
           MAASVMTSVSLKPAPFTVEK+ARG+PSLAR S  FKV ASGGKKIKTDKPYGINGSMNLR
Sbjct: 1   MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLR 60

Query: 61  DGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLA 120
           DGVDASGRK KGKGVYQ+VDKYGANVDGYSPIYDTKDWSP+GDVYVGGTTGLAIWAVTLA
Sbjct: 61  DGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAVTLA 120

Query: 121 GLLAGGALLVYNTSALAQ 139
           GLLAGGALLVYNTSAL Q
Sbjct: 121 GLLAGGALLVYNTSALVQ 138

[Close]

BLAST of Carg11392 vs. ExPASy Swiss-Prot
Match: Q40519 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum OX=4097 GN=PSBR PE=2 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 6.6e-56
Identity = 114/139 (82.01%), Postives = 127/139 (91.37%), Query Frame = 0


Query: 1   MAASVMTSVSLKPAPFTVEK-AARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNL 60
           MA++VM   SLKPAPF+VEK A +G+PSLAR S  F+V+ASG KK+KTDKPYGINGSM+L
Sbjct: 1   MASTVM---SLKPAPFSVEKTAVKGLPSLARSSSSFRVQASGVKKLKTDKPYGINGSMSL 60

Query: 61  RDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTL 120
           RDGVDASGRK KGKGVYQ+VDKYGANVDGYSPIY+T DWSPSGDVYVGGTTGLAIWAVTL
Sbjct: 61  RDGVDASGRKQKGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTL 120

Query: 121 AGLLAGGALLVYNTSALAQ 139
            G+LAGGALLV+NTSALAQ
Sbjct: 121 VGILAGGALLVFNTSALAQ 136

[Close]

BLAST of Carg11392 vs. ExPASy Swiss-Prot
Match: P06183 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum OX=4113 GN=PSBR PE=2 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 3.3e-55
Identity = 114/139 (82.01%), Postives = 126/139 (90.65%), Query Frame = 0


Query: 1   MAASVMTSVSLKPAPFTVEK-AARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNL 60
           MA++VM+S+SLKP  FT+EK + +G+PSLAR S  FKV ASG KK+KTDKPYGINGSM L
Sbjct: 1   MASTVMSSLSLKPT-FTLEKTSVKGLPSLARSSSSFKVVASGVKKLKTDKPYGINGSMAL 60

Query: 61  RDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTL 120
           RDGVDASGRK KGKGVYQYVDKYGANVDGYSPIY+T +WSPSGDVYVGGTTGLAIWAVTL
Sbjct: 61  RDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTL 120

Query: 121 AGLLAGGALLVYNTSALAQ 139
            G+LAGGALLVYNTSALAQ
Sbjct: 121 VGILAGGALLVYNTSALAQ 138

[Close]

BLAST of Carg11392 vs. ExPASy Swiss-Prot
Match: Q40163 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum OX=4081 GN=PSBR PE=2 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.3e-54
Identity = 113/139 (81.29%), Postives = 125/139 (89.93%), Query Frame = 0


Query: 1   MAASVMTSVSLKPAPFTVEK-AARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNL 60
           MA++VM+S+SLKP  FT+EK + +G+PSL R S  FKV ASG KK+KTDKPYGINGSM L
Sbjct: 1   MASTVMSSLSLKPT-FTLEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSMAL 60

Query: 61  RDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTL 120
           RDGVDASGRK KGKGVYQYVDKYGANVDGYSPIY+T +WSPSGDVYVGGTTGLAIWAVTL
Sbjct: 61  RDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTL 120

Query: 121 AGLLAGGALLVYNTSALAQ 139
            G+LAGGALLVYNTSALAQ
Sbjct: 121 LGILAGGALLVYNTSALAQ 138

[Close]

BLAST of Carg11392 vs. ExPASy Swiss-Prot
Match: P27202 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBR PE=1 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.4e-53
Identity = 114/140 (81.43%), Postives = 124/140 (88.57%), Query Frame = 0


Query: 1   MAASVM-TSVSLKPAPFTVEK-AARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMN 60
           MAASVM +SV+LKPA FTVEK AARG+PSL R    FK+ ASG KKIKTDKP+GINGSM+
Sbjct: 1   MAASVMLSSVTLKPAGFTVEKTAARGLPSLTRARPSFKIVASGVKKIKTDKPFGINGSMD 60

Query: 61  LRDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVT 120
           LRDGVDASGRKGKG GVY+YVDKYGANVDGYSPIY+  +WS SGDVY GG TGLAIWAVT
Sbjct: 61  LRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVT 120

Query: 121 LAGLLAGGALLVYNTSALAQ 139
           LAG+LAGGALLVYNTSALAQ
Sbjct: 121 LAGILAGGALLVYNTSALAQ 140

[Close]

BLAST of Carg11392 vs. ExPASy Swiss-Prot
Match: P49108 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris OX=3711 GN=PSBR PE=2 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.3e-51
Identity = 111/141 (78.72%), Postives = 125/141 (88.65%), Query Frame = 0


Query: 1   MAASVM-TSVSLKPAPFTVEK-AARGIPSLARKS-GFFKVEASGGKKIKTDKPYGINGSM 60
           MAASVM +SV+LKPA FTVEK +ARG+PSL R S   F++ ASG KKIKTDKP+G+NGSM
Sbjct: 1   MAASVMLSSVTLKPAGFTVEKMSARGLPSLTRASPSSFRIVASGVKKIKTDKPFGVNGSM 60

Query: 61  NLRDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAV 120
           +LRDGVDASGRKGKG GVY++VDKYGANVDGYSPIY+  +WS SGDVY GG TGLAIWAV
Sbjct: 61  DLRDGVDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAV 120

Query: 121 TLAGLLAGGALLVYNTSALAQ 139
           TLAG+LAGGALLVYNTSALAQ
Sbjct: 121 TLAGILAGGALLVYNTSALAQ 141

[Close]

BLAST of Carg11392 vs. ExPASy TrEMBL
Match: A0A6J1JDA0 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111483357 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.6e-68
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLR 60
           MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLR
Sbjct: 1   MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLR 60

Query: 61  DGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLA 120
           DGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLA
Sbjct: 61  DGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLA 120

Query: 121 GLLAGGALLVYNTSALAQ 139
           GLLAGGALLVYNTSALAQ
Sbjct: 121 GLLAGGALLVYNTSALAQ 138

[Close]

BLAST of Carg11392 vs. ExPASy TrEMBL
Match: A0A6J1EZP8 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111437690 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.6e-68
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLR 60
           MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLR
Sbjct: 1   MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLR 60

Query: 61  DGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLA 120
           DGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLA
Sbjct: 61  DGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLA 120

Query: 121 GLLAGGALLVYNTSALAQ 139
           GLLAGGALLVYNTSALAQ
Sbjct: 121 GLLAGGALLVYNTSALAQ 138

[Close]

BLAST of Carg11392 vs. ExPASy TrEMBL
Match: A0A6J1C3S3 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111008214 PE=3 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 5.3e-64
Identity = 129/138 (93.48%), Postives = 134/138 (97.10%), Query Frame = 0


Query: 1   MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLR 60
           MAASVMTSVSLKPAPFTVEK+A+G+PSLAR S  FKVEASGGKKIKTDKPYGINGSMNLR
Sbjct: 1   MAASVMTSVSLKPAPFTVEKSAKGLPSLARTSASFKVEASGGKKIKTDKPYGINGSMNLR 60

Query: 61  DGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLA 120
           DG+DASGRKGKGKGVYQ+VDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLA
Sbjct: 61  DGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLA 120

Query: 121 GLLAGGALLVYNTSALAQ 139
           GLLAGGALLVYNTSAL Q
Sbjct: 121 GLLAGGALLVYNTSALVQ 138

[Close]

BLAST of Carg11392 vs. ExPASy TrEMBL
Match: A0A5D3CXX1 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G001860 PE=3 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 9.9e-63
Identity = 128/138 (92.75%), Postives = 132/138 (95.65%), Query Frame = 0


Query: 1   MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLR 60
           MAASVMTSVSLKPAPFTVEK+ARG+PSLAR S  FKV ASGGKKIKTDKPYGINGSMNLR
Sbjct: 1   MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLR 60

Query: 61  DGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLA 120
           DGVDASGRK KGKGVYQ+VDKYGANVDGYSPIYDTKDWSP+GDVYVGGTTGLAIWAVTLA
Sbjct: 61  DGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAVTLA 120

Query: 121 GLLAGGALLVYNTSALAQ 139
           GLLAGGALLVYNTSAL Q
Sbjct: 121 GLLAGGALLVYNTSALVQ 138

[Close]

BLAST of Carg11392 vs. ExPASy TrEMBL
Match: A0A1S3BSD1 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103492995 PE=3 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 9.9e-63
Identity = 128/138 (92.75%), Postives = 132/138 (95.65%), Query Frame = 0


Query: 1   MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLR 60
           MAASVMTSVSLKPAPFTVEK+ARG+PSLAR S  FKV ASGGKKIKTDKPYGINGSMNLR
Sbjct: 1   MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLR 60

Query: 61  DGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLA 120
           DGVDASGRK KGKGVYQ+VDKYGANVDGYSPIYDTKDWSP+GDVYVGGTTGLAIWAVTLA
Sbjct: 61  DGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAVTLA 120

Query: 121 GLLAGGALLVYNTSALAQ 139
           GLLAGGALLVYNTSAL Q
Sbjct: 121 GLLAGGALLVYNTSALVQ 138

[Close]

BLAST of Carg11392 vs. TAIR 10
Match: AT1G79040.1 (photosystem II subunit R )

HSP 1 Score: 210.3 bits (534), Expect = 9.8e-55
Identity = 114/140 (81.43%), Postives = 124/140 (88.57%), Query Frame = 0


Query: 1   MAASVM-TSVSLKPAPFTVEK-AARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMN 60
           MAASVM +SV+LKPA FTVEK AARG+PSL R    FK+ ASG KKIKTDKP+GINGSM+
Sbjct: 1   MAASVMLSSVTLKPAGFTVEKTAARGLPSLTRARPSFKIVASGVKKIKTDKPFGINGSMD 60

Query: 61  LRDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVT 120
           LRDGVDASGRKGKG GVY+YVDKYGANVDGYSPIY+  +WS SGDVY GG TGLAIWAVT
Sbjct: 61  LRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVT 120

Query: 121 LAGLLAGGALLVYNTSALAQ 139
           LAG+LAGGALLVYNTSALAQ
Sbjct: 121 LAGILAGGALLVYNTSALAQ 140

The following BLAST results are available for this feature:

BLAST of Carg11392 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022931545.1	3.3e-68	100.00	photosystem II 10 kDa polypeptide, chloroplastic [Cucurbita moschata] >XP_022985...	[more]
XP_023553544.1	9.5e-68	99.28	photosystem II 10 kDa polypeptide, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022136536.1	1.1e-63	93.48	photosystem II 10 kDa polypeptide, chloroplastic [Momordica charantia]	[more]
XP_038876356.1	3.2e-63	93.48	photosystem II 10 kDa polypeptide, chloroplastic-like [Benincasa hispida]	[more]
XP_008451826.1	2.1e-62	92.75	PREDICTED: photosystem II 10 kDa polypeptide, chloroplastic [Cucumis melo] >TYK1...	[more]

BLAST of Carg11392 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q40519	6.6e-56	82.01	Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum OX=4097 GN...	[more]
P06183	3.3e-55	82.01	Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum OX=4113 GN...	[more]
Q40163	1.3e-54	81.29	Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum OX=4081...	[more]
P27202	1.4e-53	81.43	Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
P49108	1.3e-51	78.72	Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris OX=3711 ...	[more]

BLAST of Carg11392 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JDA0	1.6e-68	100.00	Photosystem II 10 kDa polypeptide, chloroplastic OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1EZP8	1.6e-68	100.00	Photosystem II 10 kDa polypeptide, chloroplastic OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1C3S3	5.3e-64	93.48	Photosystem II 10 kDa polypeptide, chloroplastic OS=Momordica charantia OX=3673 ...	[more]
A0A5D3CXX1	9.9e-63	92.75	Photosystem II 10 kDa polypeptide, chloroplastic OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3BSD1	9.9e-63	92.75	Photosystem II 10 kDa polypeptide, chloroplastic OS=Cucumis melo OX=3656 GN=LOC1...	[more]

BLAST of Carg11392 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G79040.1	9.8e-55	81.43	photosystem II subunit R	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006814	Photosystem II PsbR	PFAM	PF04725	PsbR	coord: 40..137 e-value: 1.1E-50 score: 169.9
IPR006814	Photosystem II PsbR	PANTHER	PTHR34369	PHOTOSYSTEM II 10 KDA POLYPEPTIDE, CHLOROPLASTIC	coord: 1..138
None	No IPR available	PANTHER	PTHR34369:SF8	BNAANNG27100D PROTEIN	coord: 1..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11392-RA	Carg11392-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010270	photosystem II oxygen evolving complex assembly
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0042651	thylakoid membrane
molecular_function	GO:0003729	mRNA binding