|
Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. TGTTTCTTGAATCCCTTCTTCATATTGATTTGATTCTTTGATGGGTTTCTTTGGATTCTTGTGATTTTGTTTCTGTTCAATGATTTAAGGATCTGTTCATCTGGGTTGCTCTTGTTCTGGATGATTTTTATGGCATTTCGTTCTTTTAGACTGTTTCTTCATGGATTCTCTGTAATGAACAAGTTATTTTCAATCTTCATCGCCCATTTCTTGTCTGATTTGGAATGTACAGGTTAGGGTTTCTTAAGCTGTTCTTATCTAGTTTTGGTTTAGAATTCTGGGTTGTGTTCTTATTTTCCTTTAAGAACTTACTGATTTGAGGCCTTTCTATATTTGTTATATTCATCAACGTTGTGTGCAAGTATGAACTATTGATTTGTTGCATTTGTTTTGTTTTCTCAAGGGTCTTGGTCCAAACTTCAACAGCTTGGGGTTGTCATTTGGTGCCTTGATCTTATCAAAAGGCTAGCAAATAAGCTAGACCCTGCCGTCAAGAATGATATATAG mRNA sequence TGTTTCTTGAATCCCTTCTTCATATTGATTTGATTCTTTGATGGGTTTCTTTGGATTCTTGTGATTTTGTTTCTGTTCAATGATTTAAGGATCTGTTCATCTGGGTTGCTCTTGTTCTGGATGATTTTTATGGCATTTCGTTCTTTTAGACTGTTTCTTCATGGATTCTCTGTAATGAACAAGTTATTTTCAATCTTCATCGCCCATTTCTTGTCTGATTTGGAATGTACAGGGTCTTGGTCCAAACTTCAACAGCTTGGGGTTGTCATTTGGTGCCTTGATCTTATCAAAAGGCTAGCAAATAAGCTAGACCCTGCCGTCAAGAATGATATATAG Coding sequence (CDS) ATGATTTTTATGGCATTTCGTTCTTTTAGACTGTTTCTTCATGGATTCTCTGTAATGAACAAGTTATTTTCAATCTTCATCGCCCATTTCTTGTCTGATTTGGAATGTACAGGGTCTTGGTCCAAACTTCAACAGCTTGGGGTTGTCATTTGGTGCCTTGATCTTATCAAAAGGCTAGCAAATAAGCTAGACCCTGCCGTCAAGAATGATATATAG Protein sequence MIFMAFRSFRLFLHGFSVMNKLFSIFIAHFLSDLECTGSWSKLQQLGVVIWCLDLIKRLANKLDPAVKNDI
Homology
BLAST of Carg11330 vs. NCBI nr
Match: KAG7015020.1 (hypothetical protein SDJN02_22651 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 144.8 bits (364), Expect = 2.8e-31 Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 Query: 1 MIFMAFRSFRLFLHGFSVMNKLFSIFIAHFLSDLECTGSWSKLQQLGVVIWCLDLIKRLA 60 MIFMAFRSFRLFLHGFSVMNKLFSIFIAHFLSDLECTGSWSKLQQLGVVIWCLDLIKRLA Sbjct: 1 MIFMAFRSFRLFLHGFSVMNKLFSIFIAHFLSDLECTGSWSKLQQLGVVIWCLDLIKRLA 60
Query: 61 NKLDPAVKNDI 72 NKLDPAVKNDI Sbjct: 61 NKLDPAVKNDI 71
BLAST of Carg11330 vs. NCBI nr
Match: KAG6576999.1 (hypothetical protein SDJN03_24573, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 128.3 bits (321), Expect = 2.7e-26 Identity = 63/69 (91.30%), Postives = 64/69 (92.75%), Query Frame = 0 Query: 3 FMAFRSFRLFLHGFSVMNKLFSIFIAHFLSDLECTGSWSKLQQLGVVIWCLDLIKRLANK 62 F F S LFLHGFSVMNKLFSIF+AHFLSDLECTGSWSKLQQLGVVIWCLDLIKRLANK Sbjct: 7 FTLFLSSGLFLHGFSVMNKLFSIFLAHFLSDLECTGSWSKLQQLGVVIWCLDLIKRLANK 66
Query: 63 LDPAVKNDI 72 LDPAVKNDI Sbjct: 67 LDPAVKNDI 75
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG7015020.1 | 2.8e-31 | 100.00 | hypothetical protein SDJN02_22651 [Cucurbita argyrosperma subsp. argyrosperma] | [more] |
KAG6576999.1 | 2.7e-26 | 91.30 | hypothetical protein SDJN03_24573, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
Relationships
The following mRNA feature(s) are a part of this gene:
|