Carg11330 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg11330
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr16: 2252365 .. 2252871 (-)
RNA-Seq ExpressionCarg11330
SyntenyCarg11330
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTTTCTTGAATCCCTTCTTCATATTGATTTGATTCTTTGATGGGTTTCTTTGGATTCTTGTGATTTTGTTTCTGTTCAATGATTTAAGGATCTGTTCATCTGGGTTGCTCTTGTTCTGGATGATTTTTATGGCATTTCGTTCTTTTAGACTGTTTCTTCATGGATTCTCTGTAATGAACAAGTTATTTTCAATCTTCATCGCCCATTTCTTGTCTGATTTGGAATGTACAGGTTAGGGTTTCTTAAGCTGTTCTTATCTAGTTTTGGTTTAGAATTCTGGGTTGTGTTCTTATTTTCCTTTAAGAACTTACTGATTTGAGGCCTTTCTATATTTGTTATATTCATCAACGTTGTGTGCAAGTATGAACTATTGATTTGTTGCATTTGTTTTGTTTTCTCAAGGGTCTTGGTCCAAACTTCAACAGCTTGGGGTTGTCATTTGGTGCCTTGATCTTATCAAAAGGCTAGCAAATAAGCTAGACCCTGCCGTCAAGAATGATATATAG

mRNA sequence

TGTTTCTTGAATCCCTTCTTCATATTGATTTGATTCTTTGATGGGTTTCTTTGGATTCTTGTGATTTTGTTTCTGTTCAATGATTTAAGGATCTGTTCATCTGGGTTGCTCTTGTTCTGGATGATTTTTATGGCATTTCGTTCTTTTAGACTGTTTCTTCATGGATTCTCTGTAATGAACAAGTTATTTTCAATCTTCATCGCCCATTTCTTGTCTGATTTGGAATGTACAGGGTCTTGGTCCAAACTTCAACAGCTTGGGGTTGTCATTTGGTGCCTTGATCTTATCAAAAGGCTAGCAAATAAGCTAGACCCTGCCGTCAAGAATGATATATAG

Coding sequence (CDS)

ATGATTTTTATGGCATTTCGTTCTTTTAGACTGTTTCTTCATGGATTCTCTGTAATGAACAAGTTATTTTCAATCTTCATCGCCCATTTCTTGTCTGATTTGGAATGTACAGGGTCTTGGTCCAAACTTCAACAGCTTGGGGTTGTCATTTGGTGCCTTGATCTTATCAAAAGGCTAGCAAATAAGCTAGACCCTGCCGTCAAGAATGATATATAG

Protein sequence

MIFMAFRSFRLFLHGFSVMNKLFSIFIAHFLSDLECTGSWSKLQQLGVVIWCLDLIKRLANKLDPAVKNDI
Homology
[Close]
BLAST of Carg11330 vs. NCBI nr
Match: KAG7015020.1 (hypothetical protein SDJN02_22651 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 144.8 bits (364), Expect = 2.8e-31
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MIFMAFRSFRLFLHGFSVMNKLFSIFIAHFLSDLECTGSWSKLQQLGVVIWCLDLIKRLA 60
          MIFMAFRSFRLFLHGFSVMNKLFSIFIAHFLSDLECTGSWSKLQQLGVVIWCLDLIKRLA
Sbjct: 1  MIFMAFRSFRLFLHGFSVMNKLFSIFIAHFLSDLECTGSWSKLQQLGVVIWCLDLIKRLA 60

Query: 61 NKLDPAVKNDI 72
          NKLDPAVKNDI
Sbjct: 61 NKLDPAVKNDI 71

[Close]
BLAST of Carg11330 vs. NCBI nr
Match: KAG6576999.1 (hypothetical protein SDJN03_24573, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 128.3 bits (321), Expect = 2.7e-26
Identity = 63/69 (91.30%), Postives = 64/69 (92.75%), Query Frame = 0 

Query: 3  FMAFRSFRLFLHGFSVMNKLFSIFIAHFLSDLECTGSWSKLQQLGVVIWCLDLIKRLANK 62
          F  F S  LFLHGFSVMNKLFSIF+AHFLSDLECTGSWSKLQQLGVVIWCLDLIKRLANK
Sbjct: 7  FTLFLSSGLFLHGFSVMNKLFSIFLAHFLSDLECTGSWSKLQQLGVVIWCLDLIKRLANK 66

Query: 63 LDPAVKNDI 72
          LDPAVKNDI
Sbjct: 67 LDPAVKNDI 75

The following BLAST results are available for this feature:
BLAST of Carg11330 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7015020.12.8e-31100.00hypothetical protein SDJN02_22651 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6576999.12.7e-2691.30hypothetical protein SDJN03_24573, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg11330 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg11330 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg11330 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg11330-RACarg11330-RAmRNA