Carg11323 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg11323
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr16: 2198782 .. 2199258 (-)
RNA-Seq Expression	Carg11323
Synteny	Carg11323

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGATAATGGAGCAATTTCTCTTGTGGGACTGTTTATGGTAGGCTTATGAATACGATTAGGAACAAGCTCATCAAACTCTGACCAAAACTTTCTGTTTTTTTTTTTTATTGTTTTTGATAAATGGTAAAGAGCTTTCTATCTTATGATTCCGTCAGTAATTGGCTCTACACTGTCAAACTATGAGAGGATTAGAAATTTAACTTCACGAAACTGCATTCGGCTTTTCTCATAATATAATCCACAACTATAGAACCCATGTTTTTGACGTAAAGTAGTAAAACTATCCATTATTTTTGTTTCATCTTTGTAGACAGAGAAATGTAGGGAATTTGTCAATAAAGCTATATATAATAAGTATATCAATCGTCTCGCAACGAATAAACAAAAGGGTGATTCCAACGGACACAAATCCAATTTTGGTGACTCCTTTCCTTTTGAGAACACTATTTACCCATCGCACTCCGTTACGTAA

mRNA sequence

ATGTATGATAATGGAGCAATTTCTCTTGTGGGACTGTTTATGACAGAGAAATGTAGGGAATTTGTCAATAAAGCTATATATAATAAGTATATCAATCGTCTCGCAACGAATAAACAAAAGGGTGATTCCAACGGACACAAATCCAATTTTGGTGACTCCTTTCCTTTTGAGAACACTATTTACCCATCGCACTCCGTTACGTAA

Coding sequence (CDS)

ATGTATGATAATGGAGCAATTTCTCTTGTGGGACTGTTTATGACAGAGAAATGTAGGGAATTTGTCAATAAAGCTATATATAATAAGTATATCAATCGTCTCGCAACGAATAAACAAAAGGGTGATTCCAACGGACACAAATCCAATTTTGGTGACTCCTTTCCTTTTGAGAACACTATTTACCCATCGCACTCCGTTACGTAA

Protein sequence

MYDNGAISLVGLFMTEKCREFVNKAIYNKYINRLATNKQKGDSNGHKSNFGDSFPFENTIYPSHSVT

Homology

[Close]

BLAST of Carg11323 vs. NCBI nr
Match: KAG7015013.1 (hypothetical protein SDJN02_22644, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 141.7 bits (356), Expect = 2.2e-30
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MYDNGAISLVGLFMTEKCREFVNKAIYNKYINRLATNKQKGDSNGHKSNFGDSFPFENTI 60
          MYDNGAISLVGLFMTEKCREFVNKAIYNKYINRLATNKQKGDSNGHKSNFGDSFPFENTI
Sbjct: 1  MYDNGAISLVGLFMTEKCREFVNKAIYNKYINRLATNKQKGDSNGHKSNFGDSFPFENTI 60

Query: 61 YPSHSVT 68
          YPSHSVT
Sbjct: 61 YPSHSVT 67

The following BLAST results are available for this feature:

BLAST of Carg11323 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7015013.1	2.2e-30	100.00	hypothetical protein SDJN02_22644, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg11323 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg11323 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg11323 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11323-RA	Carg11323-RA	mRNA