Carg11219 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg11219
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCellulose synthase
LocationCarg_Chr14: 5422817 .. 5424364 (+)
RNA-Seq ExpressionCarg11219
SyntenyCarg11219
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTGTTTCCCGGGAAAATGGCACTTGGCGAGGAACCGATTCTCTCGCGGTTGGACCGGCTGGATTATATGGTGAGCTTGTTTTATAATTTTTTTTTTTTTTTTTAATGTGTTTGTGAATATGTTATTGTGTGGACATGGTGGAGAAAAGGATGGTTTTGATGTTTGTTTCTCGGGAAAATGACCGAGAAAATGAGAAGGGTTGGTTGGTGAGAGAATCCGTTCATGATTCCTTTTGTAATTTTGACGTTGATGTTTCTTCCTTTCTACATGTTTTTTTTTTTTTTTTTTTTTCAGTTAGGCTGTTTTTCGTAAAGTTTAAGGTTTGATTATGTTGGAGTTCTATGTTTTTTTGTTCAATTAAGGGAGTGTCTTTACTAGCTATATATGTTTTAGTATTCATATTTGCGGGAATTATCTTGATCGTCGTATATTGACCTAACTGAAAGTAAAAACTCTTTCTTCGTTCTCTGTCACCTGAACCTTTATTTCCTTAGGTATTTCACTTTTATAGTCGATAATATAAAAGATCAAGTCACAACTTTGAACTTTTTTCGATCTTACCCTTAAATCGGAACAAAAACAGTTGAGTCTATGTGATCATGCATGAAAGTTCTCCATCTTTGTCTTCGTTACGTCATAGACATCCCTAGAACCGATCAATTTTTTCTCATCAAATCGAGACGGGTTTTTAATTATTTACCTATTTATTAAAATTAGGTTTGTCATCTATCCTACACCCATGGTAGGGTTATTGTAGGTGAGAATATTTGTTTAATCCATCACACGGCGGGAGTTATCTTTTTTATAATCAAATAAATTATAAGAATATAGAAAGAGAGAAACCTACCTAGGAACACAAATATTTAGATATTTACCTTATAATAAAATATTAAATATGATATATACATAAAATATAATTTAGTATTAAATATTATTATAGGAACACAAATATTTAGATATTTATCTTATAATAAAATATTAAATATGATATATACTTAAAATATAATTTAGTATTAATATAATTTTTGAAGTAATTTTTTTTGTTTTTTTTTTTTTTTTTTTTGTAATTATTTATTTTTAACAGTTGAGGCTGATAGAAGAAATTAAAGGGGACAGCAAGTCAGTAAAGAGCTCGTGTACATCTTCCCCGTTAAGTGGGGCCCACACGAGCGATTATCACACATCGTCCGTTGATCTGTCTCCAAGAAGTCTGGAGAAGCAGTGCCGTCCGATCAACGACGCAGTCAAAGTCACTGAACTCAAAGGAAGCCTTCTCGAGAGAATGGACAAGATTGAGGATAGAGTCCTGAAGGTAAAACCCACTCATAAATTAAAATATTAAAATATTGGAAATTTAATTTAATTTAATTTTGTAAATAAATATTTAGTTTTTGGTGTGTTGGAATTTTGAACAGCTTTGTTTGCAAGTAGAGGGAGAGATTGAAAGGGAGAGGGAGATGATAATGGTTGAGAAGAGTAGGAAGAAGCCTAAGAAGAGCTTTAAACAACTTTTTCAACACTGTATGAACGGATCGAGAAAGATGTGA

mRNA sequence

TTTGTTTCCCGGGAAAATGGCACTTGGCGAGGAACCGATTCTCTCGCGGTTGGACCGGCTGGATTATATGTTGAGGCTGATAGAAGAAATTAAAGGGGACAGCAAGTCAGTAAAGAGCTCGTGTACATCTTCCCCGTTAAGTGGGGCCCACACGAGCGATTATCACACATCGTCCGTTGATCTGTCTCCAAGAAGTCTGGAGAAGCAGTGCCGTCCGATCAACGACGCAGTCAAAGTCACTGAACTCAAAGGAAGCCTTCTCGAGAGAATGGACAAGATTGAGGATAGAGTCCTGAAGCTTTGTTTGCAAGTAGAGGGAGAGATTGAAAGGGAGAGGGAGATGATAATGGTTGAGAAGAGTAGGAAGAAGCCTAAGAAGAGCTTTAAACAACTTTTTCAACACTGTATGAACGGATCGAGAAAGATGTGA

Coding sequence (CDS)

ATGGCACTTGGCGAGGAACCGATTCTCTCGCGGTTGGACCGGCTGGATTATATGTTGAGGCTGATAGAAGAAATTAAAGGGGACAGCAAGTCAGTAAAGAGCTCGTGTACATCTTCCCCGTTAAGTGGGGCCCACACGAGCGATTATCACACATCGTCCGTTGATCTGTCTCCAAGAAGTCTGGAGAAGCAGTGCCGTCCGATCAACGACGCAGTCAAAGTCACTGAACTCAAAGGAAGCCTTCTCGAGAGAATGGACAAGATTGAGGATAGAGTCCTGAAGCTTTGTTTGCAAGTAGAGGGAGAGATTGAAAGGGAGAGGGAGATGATAATGGTTGAGAAGAGTAGGAAGAAGCCTAAGAAGAGCTTTAAACAACTTTTTCAACACTGTATGAACGGATCGAGAAAGATGTGA

Protein sequence

MALGEEPILSRLDRLDYMLRLIEEIKGDSKSVKSSCTSSPLSGAHTSDYHTSSVDLSPRSLEKQCRPINDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPKKSFKQLFQHCMNGSRKM
Homology
BLAST of Carg11219 vs. NCBI nr
Match: KAG7018080.1 (hypothetical protein SDJN02_19946 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 261.9 bits (668), Expect = 3.0e-66
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0

Query: 1   MALGEEPILSRLDRLDYMLRLIEEIKGDSKSVKSSCTSSPLSGAHTSDYHTSSVDLSPRS 60
           MALGEEPILSRLDRLDYMLRLIEEIKGDSKSVKSSCTSSPLSGAHTSDYHTSSVDLSPRS
Sbjct: 1   MALGEEPILSRLDRLDYMLRLIEEIKGDSKSVKSSCTSSPLSGAHTSDYHTSSVDLSPRS 60

Query: 61  LEKQCRPINDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPK 120
           LEKQCRPINDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPK
Sbjct: 61  LEKQCRPINDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPK 120

Query: 121 KSFKQLFQHCMNGSRKM 138
           KSFKQLFQHCMNGSRKM
Sbjct: 121 KSFKQLFQHCMNGSRKM 137

BLAST of Carg11219 vs. NCBI nr
Match: KAG6581574.1 (hypothetical protein SDJN03_21576, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 259.6 bits (662), Expect = 1.5e-65
Identity = 136/137 (99.27%), Postives = 136/137 (99.27%), Query Frame = 0

Query: 1   MALGEEPILSRLDRLDYMLRLIEEIKGDSKSVKSSCTSSPLSGAHTSDYHTSSVDLSPRS 60
           MALGEEPILSRLDRLDYMLRLIEEIKGDSKSVKSSCTSSPLSGAHTSDYHTSSVDLSPRS
Sbjct: 1   MALGEEPILSRLDRLDYMLRLIEEIKGDSKSVKSSCTSSPLSGAHTSDYHTSSVDLSPRS 60

Query: 61  LEKQCRPINDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPK 120
           LEKQCRPINDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPK
Sbjct: 61  LEKQCRPINDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPK 120

Query: 121 KSFKQLFQHCMNGSRKM 138
           KSFKQLFQHCM GSRKM
Sbjct: 121 KSFKQLFQHCMTGSRKM 137

BLAST of Carg11219 vs. NCBI nr
Match: XP_022934271.1 (uncharacterized protein LOC111441483 [Cucurbita moschata])

HSP 1 Score: 255.0 bits (650), Expect = 3.7e-64
Identity = 133/137 (97.08%), Postives = 135/137 (98.54%), Query Frame = 0

Query: 1   MALGEEPILSRLDRLDYMLRLIEEIKGDSKSVKSSCTSSPLSGAHTSDYHTSSVDLSPRS 60
           MALGEEPILSRLDRLDYMLRL+EEIKGDSKSVKSSCTSSPLSGAHTSDYHTSSVDLSPRS
Sbjct: 1   MALGEEPILSRLDRLDYMLRLLEEIKGDSKSVKSSCTSSPLSGAHTSDYHTSSVDLSPRS 60

Query: 61  LEKQCRPINDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPK 120
           LEKQCRPINDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIERE+EMIMVEKSRKKPK
Sbjct: 61  LEKQCRPINDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREKEMIMVEKSRKKPK 120

Query: 121 KSFKQLFQHCMNGSRKM 138
           KSFKQLFQHCM GS KM
Sbjct: 121 KSFKQLFQHCMTGSGKM 137

BLAST of Carg11219 vs. NCBI nr
Match: XP_023528604.1 (uncharacterized protein LOC111791474 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 235.0 bits (598), Expect = 4.0e-58
Identity = 122/137 (89.05%), Postives = 129/137 (94.16%), Query Frame = 0

Query: 1   MALGEEPILSRLDRLDYMLRLIEEIKGDSKSVKSSCTSSPLSGAHTSDYHTSSVDLSPRS 60
           MALGEEPILSRLDRL ++LR++EEIKG SKS KSSCTSSP SGAHTSDYHTSSVDLSPRS
Sbjct: 1   MALGEEPILSRLDRLFFLLRVVEEIKGGSKSAKSSCTSSPTSGAHTSDYHTSSVDLSPRS 60

Query: 61  LEKQCRPINDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPK 120
           LEK CRP+NDAVKVTELKGSLLER+DKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPK
Sbjct: 61  LEKHCRPMNDAVKVTELKGSLLERLDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPK 120

Query: 121 KSFKQLFQHCMNGSRKM 138
           KSFKQL QHCM GS K+
Sbjct: 121 KSFKQLLQHCMTGSGKI 137

BLAST of Carg11219 vs. NCBI nr
Match: XP_004151057.1 (uncharacterized protein LOC101205386 [Cucumis sativus] >KGN58589.1 hypothetical protein Csa_001276 [Cucumis sativus])

HSP 1 Score: 194.1 bits (492), Expect = 7.8e-46
Identity = 99/133 (74.44%), Postives = 113/133 (84.96%), Query Frame = 0

Query: 1   MALGEEPILSRLDRLDYMLRLIEEIKGDSKSVKSSCTSSPLSGAHTSDYHTSSVDLSPRS 60
           MA+ EEPILSRLDRLD MLR +EEI+G  KS KSSC S+P SG  TSDYHTSSVDLSP+S
Sbjct: 1   MAVAEEPILSRLDRLDVMLRRLEEIRGCGKSPKSSCASTPSSGTLTSDYHTSSVDLSPKS 60

Query: 61  LEKQCRPINDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPK 120
           LEK CRPIN  VKV ELKGSL+ERMD +EDRVLKLC+QVEG++ERE++MIMVEK  +KPK
Sbjct: 61  LEKHCRPINHVVKVAELKGSLVERMDNLEDRVLKLCIQVEGDLEREKDMIMVEKKERKPK 120

Query: 121 KSFKQLFQHCMNG 134
           +SFKQL Q CM G
Sbjct: 121 RSFKQLVQRCMTG 133

BLAST of Carg11219 vs. ExPASy TrEMBL
Match: A0A6J1F1D1 (uncharacterized protein LOC111441483 OS=Cucurbita moschata OX=3662 GN=LOC111441483 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 1.8e-64
Identity = 133/137 (97.08%), Postives = 135/137 (98.54%), Query Frame = 0

Query: 1   MALGEEPILSRLDRLDYMLRLIEEIKGDSKSVKSSCTSSPLSGAHTSDYHTSSVDLSPRS 60
           MALGEEPILSRLDRLDYMLRL+EEIKGDSKSVKSSCTSSPLSGAHTSDYHTSSVDLSPRS
Sbjct: 1   MALGEEPILSRLDRLDYMLRLLEEIKGDSKSVKSSCTSSPLSGAHTSDYHTSSVDLSPRS 60

Query: 61  LEKQCRPINDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPK 120
           LEKQCRPINDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIERE+EMIMVEKSRKKPK
Sbjct: 61  LEKQCRPINDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREKEMIMVEKSRKKPK 120

Query: 121 KSFKQLFQHCMNGSRKM 138
           KSFKQLFQHCM GS KM
Sbjct: 121 KSFKQLFQHCMTGSGKM 137

BLAST of Carg11219 vs. ExPASy TrEMBL
Match: A0A0A0LCD9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G695850 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 3.8e-46
Identity = 99/133 (74.44%), Postives = 113/133 (84.96%), Query Frame = 0

Query: 1   MALGEEPILSRLDRLDYMLRLIEEIKGDSKSVKSSCTSSPLSGAHTSDYHTSSVDLSPRS 60
           MA+ EEPILSRLDRLD MLR +EEI+G  KS KSSC S+P SG  TSDYHTSSVDLSP+S
Sbjct: 1   MAVAEEPILSRLDRLDVMLRRLEEIRGCGKSPKSSCASTPSSGTLTSDYHTSSVDLSPKS 60

Query: 61  LEKQCRPINDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPK 120
           LEK CRPIN  VKV ELKGSL+ERMD +EDRVLKLC+QVEG++ERE++MIMVEK  +KPK
Sbjct: 61  LEKHCRPINHVVKVAELKGSLVERMDNLEDRVLKLCIQVEGDLEREKDMIMVEKKERKPK 120

Query: 121 KSFKQLFQHCMNG 134
           +SFKQL Q CM G
Sbjct: 121 RSFKQLVQRCMTG 133

BLAST of Carg11219 vs. ExPASy TrEMBL
Match: A0A5A7U299 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00740 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.9e-45
Identity = 100/134 (74.63%), Postives = 115/134 (85.82%), Query Frame = 0

Query: 1   MALGEEPILSRLDRLDYMLRLIEEIKGDSKSVKSSCTSSPLSGAHTSDYHTSSVDLSPRS 60
           MA+ EEPILSRLDRLD MLR +EEIKG +KS KSSC S+P SG  TSDYHTSSVDLSP+S
Sbjct: 1   MAVAEEPILSRLDRLDNMLRRLEEIKGCAKSPKSSCASTPSSGTLTSDYHTSSVDLSPKS 60

Query: 61  LEKQCRPINDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREMIMV-EKSRKKP 120
           LEK CRPIN  V+V ELKGSL+ERMD +EDRVLKLC+QVEGE+ERE++M+MV +K +KKP
Sbjct: 61  LEKHCRPINHVVRVAELKGSLVERMDNLEDRVLKLCIQVEGEMEREKDMVMVDQKKKKKP 120

Query: 121 KKSFKQLFQHCMNG 134
           KKSFKQL Q CM G
Sbjct: 121 KKSFKQLVQQCMTG 134

BLAST of Carg11219 vs. ExPASy TrEMBL
Match: A0A1S3CFF4 (uncharacterized protein LOC103500315 OS=Cucumis melo OX=3656 GN=LOC103500315 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.9e-45
Identity = 100/134 (74.63%), Postives = 115/134 (85.82%), Query Frame = 0

Query: 1   MALGEEPILSRLDRLDYMLRLIEEIKGDSKSVKSSCTSSPLSGAHTSDYHTSSVDLSPRS 60
           MA+ EEPILSRLDRLD MLR +EEIKG +KS KSSC S+P SG  TSDYHTSSVDLSP+S
Sbjct: 1   MAVAEEPILSRLDRLDNMLRRLEEIKGCAKSPKSSCASTPSSGTLTSDYHTSSVDLSPKS 60

Query: 61  LEKQCRPINDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREMIMV-EKSRKKP 120
           LEK CRPIN  V+V ELKGSL+ERMD +EDRVLKLC+QVEGE+ERE++M+MV +K +KKP
Sbjct: 61  LEKHCRPINHVVRVAELKGSLVERMDNLEDRVLKLCIQVEGEMEREKDMVMVDQKKKKKP 120

Query: 121 KKSFKQLFQHCMNG 134
           KKSFKQL Q CM G
Sbjct: 121 KKSFKQLVQQCMTG 134

BLAST of Carg11219 vs. ExPASy TrEMBL
Match: A0A6J1DGX0 (uncharacterized protein LOC111020329 OS=Momordica charantia OX=3673 GN=LOC111020329 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.7e-43
Identity = 97/135 (71.85%), Postives = 114/135 (84.44%), Query Frame = 0

Query: 1   MALGEEPILSRLDRLDYMLRLIEEIKGDSKSVKSSCTSSPLSGAHTSDYHTSSVDLSPRS 60
           MA+ EEPILSRLDRLD +LR +EEI+G  KS KSSC S+P SG  TSDYHTSSVDLSP+S
Sbjct: 1   MAVAEEPILSRLDRLDNILRRLEEIRGCGKSPKSSCGSTPSSGTLTSDYHTSSVDLSPKS 60

Query: 61  LEKQCRPINDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREMIMV--EKSRKK 120
           LEK CRPI++ +K+TE+KGSL++RMD IEDRVLKLCLQ+EGEIERERE +MV  +  +KK
Sbjct: 61  LEKHCRPISNVIKITEVKGSLVQRMDNIEDRVLKLCLQLEGEIERERETLMVSEKNKKKK 120

Query: 121 PKKSFKQLFQHCMNG 134
           PKKSFKQL Q CM G
Sbjct: 121 PKKSFKQLVQRCMTG 135

BLAST of Carg11219 vs. TAIR 10
Match: AT1G07985.1 (Expressed protein )

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-19
Identity = 62/124 (50.00%), Postives = 84/124 (67.74%), Query Frame = 0

Query: 1   MALGEEPILSRLDRLDYMLRLIEEIKGDSKSVKSSCTSSPLSGAHTSDYHTSSVDL-SPR 60
           MA+ EEPILSRLDR+D+M+R +EE+KG S   +SS  S+P SG        SS+DL SPR
Sbjct: 1   MAVVEEPILSRLDRIDFMVRKLEEMKGSSP--RSSSPSTPSSGT-----QPSSMDLSSPR 60

Query: 61  SLEK-QCRPINDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREM-IMVEKSRK 120
           S+ K  CR +    + TE KG+LLER++ +E++VLKLC Q E E+E ER+     +K +K
Sbjct: 61  SIGKVHCRSMEQVREETERKGTLLERLNNVEEQVLKLCSQFEEEVEEERKREDKTDKEKK 117

Query: 121 KPKK 122
            PKK
Sbjct: 121 TPKK 117

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7018080.13.0e-66100.00hypothetical protein SDJN02_19946 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6581574.11.5e-6599.27hypothetical protein SDJN03_21576, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022934271.13.7e-6497.08uncharacterized protein LOC111441483 [Cucurbita moschata][more]
XP_023528604.14.0e-5889.05uncharacterized protein LOC111791474 [Cucurbita pepo subsp. pepo][more]
XP_004151057.17.8e-4674.44uncharacterized protein LOC101205386 [Cucumis sativus] >KGN58589.1 hypothetical ... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1F1D11.8e-6497.08uncharacterized protein LOC111441483 OS=Cucurbita moschata OX=3662 GN=LOC1114414... [more]
A0A0A0LCD93.8e-4674.44Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G695850 PE=4 SV=1[more]
A0A5A7U2991.9e-4574.63Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A1S3CFF41.9e-4574.63uncharacterized protein LOC103500315 OS=Cucumis melo OX=3656 GN=LOC103500315 PE=... [more]
A0A6J1DGX01.7e-4371.85uncharacterized protein LOC111020329 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
Match NameE-valueIdentityDescription
AT1G07985.11.3e-1950.00Expressed protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..55
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..55
NoneNo IPR availablePANTHERPTHR34190EXPRESSED PROTEINcoord: 4..136
NoneNo IPR availablePANTHERPTHR34190:SF4EXPRESSED PROTEINcoord: 4..136

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg11219-RACarg11219-RAmRNA