Carg11212 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg11212
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRibosomal protein S21 family protein isoform 1
LocationCarg_Chr14: 5376525 .. 5378670 (-)
RNA-Seq ExpressionCarg11212
SyntenyCarg11212
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCACTTTCTTTCTCGCCGTCGTTTCCCTTCATCCCAAGTTTCGACTCTCTAACCGCAGCTACCGTCGCCGTCCTTCACTGTGCCTTATCGGCGCCGACATAGCCCACTTCACCTGCTGTATGAACGACAAACCGAGTGGTTGAACTCTAGTAATGAATTCGTTGTCGCGAAACCTATCTTGCTCCATCAGATCTTCGTTGCACACCAATTGCCTGCAGCACCTTCACTATCAGCAGCAGCAATGGAGGGGGATCAGAGTGAAGGTACTGAATGGAAATTTGGAGCGGGCACTGACATTTTTGCAAAGGAAGATGCGATCGAGCGGAATTGAGCGGCTGATTAAGCGTGAACAGACTCATCATATAAAGAATTCTGAGAAACGAGTTTTGGCCAGAAAGAATTTGGAGCGCAAAATTCGATCGCAGGACCTCGCTCGCAAGCTCAAAGCCATCCTTATAAAGAAAGTCAGGTATTTGTAAATCTTTTCCTTCAACAATAAGCTATTTGCGCGATGTTGCTAGTGTTCGAATGGATTCTGCATAGTGGCCTGATCGTATGGTTCTTCTAGCTTTGTTTATAATGTGCTTGCCTAGTTTTAGCGACTAGCGATTGCTTAGAACTTGAAGTGTGTACTTGGTACAATCAAGTGCAACACGTTTCTGCCCGTAGAACTGTAAGAAAATTTGACTTCGTGCCCAAACCATCAACAACCTATTGCTAGCACAATGTCTATGATTCAGAGTAAAGTTAAAATGCTGAAGGAAAGATACAATCGAACATGATCATGTATTCTGTTGAAATTCTTTTAGGAATTGTTGAGTTGGCAATACTGGCGATCATTAAAGAGAACAAGATCAAGTTATCTGTTCTTATCAATTCAGTTCTTTGGAGTTGTTTAGAAGATTATCGATGACCGACCTCCCTTGACATTATCAAAGACTTCATCCAGCAAATCCTTTAAGATCATCAGTTCGAAAACAAAGCCAATACATTTGAACTAATTTATGAATAACCCAGCTTTCATTTAGAAGAATTGAAAGAATTCAGGATCATACAAAAAAAGGGAGGCAAACTACAAAAAGGACCTCCAATCAAGAGAAATATGAATCAAGGATAATTGCAGAAGTGTTTAGTAATTCAAGCCATAAGGACAAAATTCTCATACTCCAACTTGCCACAAGAAACTAACCAATATCAGTATGCTTATGCAGAATCTCACATGCCTGGCTAAAATTTTATTTAGTTTAAAGAGAATAGAACCAGGGATTTCTAGACTTGTTCAGGATATCTTAGAAGGATTATTTAGTATCTTTAAATATTTTTAAAAAATATATTATTGCCTAGCATCTTTAGCTCAAAGAAGCTGTATCTTTCAAGCGCTACTTGGAGTTTTACTTCTCCTTCTTTTAATTAAGTAGTTGCTTATTTTCTCAAGTCGAGAAAAGAAATTGATTTGGACTAAACTTGGACAGAATTATTCATTATGCACATGATTGAACGAGGAAAAAAACGGCTTGGATTAACTTAAAAGAATAAACGAATGTAACGAGAAGATTGTTCCGAGAAAAGTGTGGTTTTTGCTTTTGGATTCTCCCTCTGCTTTCTAACTTCAACTTTATCATCTGATTTGTTGCAGGGGTCTGTAAGCATGTGGTATGTGGCATTATAGTTTCACAGGCATCTCCTCTTAACTATGGCTGCCTCTTAAAAGTGCAATTGAAGTTCCTTTATTCAGCAGGAAGGCGCCAACGAGCTGTTTATCTTACATGGCTTTCTATCGTTCTGTTTTCTCTTATCTGAGCAATATTGCTGCCCGCTATGGTACCTCCCAAATTCTGTTGTTCCTCTTTTGAAATATATTAAAAATTGCCCATAAGGGTCCTATAATAGTGAGTTTAAAGGGAGCGGACTCGAATCAATGTTGGCCACTTAGATTTAACATCTTACACCTGTTTTTGGTGTCTAGATGTTGTATGGGTCAAGTGGGTTATCTCGTGATATTAGTCGTAAGGGTCAAGTGGGTTATCTCGTGATATTAGTCGTAAGGGTCATGGGTATAATAAGGAGTTTAGAGGGAGTGAATTTAATCAATGGTGACCACTTAGATTTAACATCTTACTCGTGTTTTTGGTGTCTAGATGTTGT

mRNA sequence

ATCACTTTCTTTCTCGCCGTCGTTTCCCTTCATCCCAAGTTTCGACTCTCTAACCGCAGCTACCGTCGCCGTCCTTCACTGTGCCTTATCGGCGCCGACATAGCCCACTTCACCTGCTGTATGAACGACAAACCGAGTGGTTGAACTCTAGTAATGAATTCGTTGTCGCGAAACCTATCTTGCTCCATCAGATCTTCGTTGCACACCAATTGCCTGCAGCACCTTCACTATCAGCAGCAGCAATGGAGGGGGATCAGAGTGAAGGTACTGAATGGAAATTTGGAGCGGGCACTGACATTTTTGCAAAGGAAGATGCGATCGAGCGGAATTGAGCGGCTGATTAAGCGTGAACAGACTCATCATATAAAGAATTCTGAGAAACGAGTTTTGGCCAGAAAGAATTTGGAGCGCAAAATTCGATCGCAGGACCTCGCTCGCAAGCTCAAAGCCATCCTTATAAAGAAAGTCAGGGGTCTGTAAGCATGTGGTATGTGGCATTATAGTTTCACAGGCATCTCCTCTTAACTATGGCTGCCTCTTAAAAGTGCAATTGAAGTTCCTTTATTCAGCAGGAAGGCGCCAACGAGCTGTTTATCTTACATGGCTTTCTATCGTTCTGTTTTCTCTTATCTGAGCAATATTGCTGCCCGCTATGGTACCTCCCAAATTCTGTTGTTCCTCTTTTGAAATATATTAAAAATTGCCCATAAGGGTCCTATAATAGTGAGTTTAAAGGGAGCGGACTCGAATCAATGTTGGCCACTTAGATTTAACATCTTACACCTGTTTTTGGTGTCTAGATGTTGTATGGGTCAAGTGGGTTATCTCGTGATATTAGTCGTAAGGGTCAAGTGGGTTATCTCGTGATATTAGTCGTAAGGGTCATGGGTATAATAAGGAGTTTAGAGGGAGTGAATTTAATCAATGGTGACCACTTAGATTTAACATCTTACTCGTGTTTTTGGTGTCTAGATGTTGT

Coding sequence (CDS)

ATGAATTCGTTGTCGCGAAACCTATCTTGCTCCATCAGATCTTCGTTGCACACCAATTGCCTGCAGCACCTTCACTATCAGCAGCAGCAATGGAGGGGGATCAGAGTGAAGGTACTGAATGGAAATTTGGAGCGGGCACTGACATTTTTGCAAAGGAAGATGCGATCGAGCGGAATTGAGCGGCTGATTAAGCGTGAACAGACTCATCATATAAAGAATTCTGAGAAACGAGTTTTGGCCAGAAAGAATTTGGAGCGCAAAATTCGATCGCAGGACCTCGCTCGCAAGCTCAAAGCCATCCTTATAAAGAAAGTCAGGGGTCTGTAA

Protein sequence

MNSLSRNLSCSIRSSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL
Homology
BLAST of Carg11212 vs. NCBI nr
Match: KAG6581566.1 (Cycloartenol-C-24-methyltransferase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 203.0 bits (515), Expect = 1.3e-48
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0

Query: 1   MNSLSRNLSCSIRSSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIE 60
           MNSLSRNLSCSIRSSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIE
Sbjct: 1   MNSLSRNLSCSIRSSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIE 60

Query: 61  RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 109
           RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL
Sbjct: 61  RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 108

BLAST of Carg11212 vs. NCBI nr
Match: XP_022934889.1 (uncharacterized protein LOC111441929 [Cucurbita moschata] >XP_023526273.1 uncharacterized protein LOC111789807 [Cucurbita pepo subsp. pepo] >KAG7018073.1 hypothetical protein SDJN02_19939 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 203.0 bits (515), Expect = 1.3e-48
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0

Query: 1   MNSLSRNLSCSIRSSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIE 60
           MNSLSRNLSCSIRSSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIE
Sbjct: 1   MNSLSRNLSCSIRSSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIE 60

Query: 61  RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 109
           RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL
Sbjct: 61  RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 108

BLAST of Carg11212 vs. NCBI nr
Match: XP_022982723.1 (uncharacterized protein LOC111481507 [Cucurbita maxima])

HSP 1 Score: 199.1 bits (505), Expect = 1.9e-47
Identity = 105/108 (97.22%), Postives = 108/108 (100.00%), Query Frame = 0

Query: 1   MNSLSRNLSCSIRSSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIE 60
           MNSLSRNLSCSIRSS+HTNCL+HLHYQQQQWRGIRVKVLNGNLERALTFLQRKM+SSGIE
Sbjct: 1   MNSLSRNLSCSIRSSMHTNCLKHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMQSSGIE 60

Query: 61  RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 109
           RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL
Sbjct: 61  RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 108

BLAST of Carg11212 vs. NCBI nr
Match: KAG6573697.1 (hypothetical protein SDJN03_27584, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 174.5 bits (441), Expect = 5.0e-40
Identity = 96/108 (88.89%), Postives = 100/108 (92.59%), Query Frame = 0

Query: 1   MNSLSRNLSCSIRSSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIE 60
           MNSL+RN+SCSIRSS+H      LH  QQQWRGIRVKVLNGNLERA+TFLQRKMRSSGIE
Sbjct: 1   MNSLARNISCSIRSSIHATA--SLHCYQQQWRGIRVKVLNGNLERAITFLQRKMRSSGIE 60

Query: 61  RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 109
           RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL
Sbjct: 61  RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 106

BLAST of Carg11212 vs. NCBI nr
Match: XP_022945130.1 (uncharacterized protein LOC111449463 [Cucurbita moschata] >XP_023541241.1 uncharacterized protein LOC111801465 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 174.5 bits (441), Expect = 5.0e-40
Identity = 96/108 (88.89%), Postives = 100/108 (92.59%), Query Frame = 0

Query: 1   MNSLSRNLSCSIRSSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIE 60
           MNSL+RN+SCSIRSS+H      LH  QQQWRGIRVKVLNGNLERA+TFLQRKMRSSGIE
Sbjct: 1   MNSLARNISCSIRSSIHATA--SLHCYQQQWRGIRVKVLNGNLERAITFLQRKMRSSGIE 60

Query: 61  RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 109
           RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL
Sbjct: 61  RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 106

BLAST of Carg11212 vs. ExPASy TrEMBL
Match: A0A6J1F3V2 (uncharacterized protein LOC111441929 OS=Cucurbita moschata OX=3662 GN=LOC111441929 PE=3 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 6.4e-49
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0

Query: 1   MNSLSRNLSCSIRSSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIE 60
           MNSLSRNLSCSIRSSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIE
Sbjct: 1   MNSLSRNLSCSIRSSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIE 60

Query: 61  RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 109
           RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL
Sbjct: 61  RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 108

BLAST of Carg11212 vs. ExPASy TrEMBL
Match: A0A6J1J5L6 (uncharacterized protein LOC111481507 OS=Cucurbita maxima OX=3661 GN=LOC111481507 PE=3 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 9.2e-48
Identity = 105/108 (97.22%), Postives = 108/108 (100.00%), Query Frame = 0

Query: 1   MNSLSRNLSCSIRSSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIE 60
           MNSLSRNLSCSIRSS+HTNCL+HLHYQQQQWRGIRVKVLNGNLERALTFLQRKM+SSGIE
Sbjct: 1   MNSLSRNLSCSIRSSMHTNCLKHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMQSSGIE 60

Query: 61  RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 109
           RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL
Sbjct: 61  RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 108

BLAST of Carg11212 vs. ExPASy TrEMBL
Match: A0A6J1G018 (uncharacterized protein LOC111449463 OS=Cucurbita moschata OX=3662 GN=LOC111449463 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.4e-40
Identity = 96/108 (88.89%), Postives = 100/108 (92.59%), Query Frame = 0

Query: 1   MNSLSRNLSCSIRSSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIE 60
           MNSL+RN+SCSIRSS+H      LH  QQQWRGIRVKVLNGNLERA+TFLQRKMRSSGIE
Sbjct: 1   MNSLARNISCSIRSSIHATA--SLHCYQQQWRGIRVKVLNGNLERAITFLQRKMRSSGIE 60

Query: 61  RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 109
           RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL
Sbjct: 61  RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 106

BLAST of Carg11212 vs. ExPASy TrEMBL
Match: A0A6J1DEG8 (uncharacterized protein LOC111019699 OS=Momordica charantia OX=3673 GN=LOC111019699 PE=3 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 4.1e-40
Identity = 97/112 (86.61%), Postives = 103/112 (91.96%), Query Frame = 0

Query: 1   MNSLSRNLSCSIRSSLHT----NCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRS 60
           MNSL+RN+SC IR S+HT    + LQ+LH QQQQWRGIRVKVLNGNLERAL FLQRKM+S
Sbjct: 1   MNSLARNVSCFIRPSIHTTDSIHFLQNLHCQQQQWRGIRVKVLNGNLERALKFLQRKMQS 60

Query: 61  SGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 109
           SGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL
Sbjct: 61  SGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 112

BLAST of Carg11212 vs. ExPASy TrEMBL
Match: A0A6J1HQF3 (uncharacterized protein LOC111466431 OS=Cucurbita maxima OX=3661 GN=LOC111466431 PE=3 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 7.1e-40
Identity = 95/108 (87.96%), Postives = 100/108 (92.59%), Query Frame = 0

Query: 1   MNSLSRNLSCSIRSSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIE 60
           MNSL+RN+SCSIRSS+H      LH  QQQWRGIRVKVLNGNLERA+TFLQRKM+SSGIE
Sbjct: 1   MNSLARNISCSIRSSIHATA--SLHCYQQQWRGIRVKVLNGNLERAITFLQRKMQSSGIE 60

Query: 61  RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 109
           RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL
Sbjct: 61  RLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL 106

BLAST of Carg11212 vs. TAIR 10
Match: AT3G26360.1 (Ribosomal protein S21 family protein )

HSP 1 Score: 112.8 bits (281), Expect = 1.7e-25
Identity = 62/85 (72.94%), Postives = 75/85 (88.24%), Query Frame = 0

Query: 24  LHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIERLIKREQTHHIKNSEKRVLARKN 83
           L+ Q QQ RGIRVKV + +L++ALT LQ+KM+SSG+ERLIK  QTHHIKNSEK+VLARKN
Sbjct: 17  LNQQLQQERGIRVKVFSNDLDKALTILQKKMQSSGMERLIKGTQTHHIKNSEKKVLARKN 76

Query: 84  LERKIRSQDLARKLKAILIKKVRGL 109
           LER+I+S D ARKL++ILIKKVRGL
Sbjct: 77  LERRIKSIDFARKLQSILIKKVRGL 101

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6581566.11.3e-48100.00Cycloartenol-C-24-methyltransferase, partial [Cucurbita argyrosperma subsp. soro... [more]
XP_022934889.11.3e-48100.00uncharacterized protein LOC111441929 [Cucurbita moschata] >XP_023526273.1 unchar... [more]
XP_022982723.11.9e-4797.22uncharacterized protein LOC111481507 [Cucurbita maxima][more]
KAG6573697.15.0e-4088.89hypothetical protein SDJN03_27584, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022945130.15.0e-4088.89uncharacterized protein LOC111449463 [Cucurbita moschata] >XP_023541241.1 unchar... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1F3V26.4e-49100.00uncharacterized protein LOC111441929 OS=Cucurbita moschata OX=3662 GN=LOC1114419... [more]
A0A6J1J5L69.2e-4897.22uncharacterized protein LOC111481507 OS=Cucurbita maxima OX=3661 GN=LOC111481507... [more]
A0A6J1G0182.4e-4088.89uncharacterized protein LOC111449463 OS=Cucurbita moschata OX=3662 GN=LOC1114494... [more]
A0A6J1DEG84.1e-4086.61uncharacterized protein LOC111019699 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
A0A6J1HQF37.1e-4087.96uncharacterized protein LOC111466431 OS=Cucurbita maxima OX=3661 GN=LOC111466431... [more]
Match NameE-valueIdentityDescription
AT3G26360.11.7e-2572.94Ribosomal protein S21 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001911Ribosomal protein S21PFAMPF01165Ribosomal_S21coord: 36..89
e-value: 6.4E-13
score: 48.2
NoneNo IPR availablePANTHERPTHR37228RIBOSOMAL PROTEIN S21 FAMILY PROTEINcoord: 1..107
NoneNo IPR availablePANTHERPTHR37228:SF1RIBOSOMAL PROTEIN S21 FAMILY PROTEINcoord: 1..107

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg11212-RACarg11212-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome